Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00526

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00525 and MPMX19_00526 are separated by 376 nucleotidesMPMX19_00526 and MPMX19_00527 are separated by 31 nucleotidesMPMX19_00527 and MPMX19_00528 are separated by 67 nucleotides MPMX19_00525: MPMX19_00525 - Isoleucine--tRNA ligase, at 532,838 to 535,681 _00525 MPMX19_00526: MPMX19_00526 - hypothetical protein, at 536,058 to 537,035 _00526 MPMX19_00527: MPMX19_00527 - hypothetical protein, at 537,067 to 537,789 _00527 MPMX19_00528: MPMX19_00528 - Beta-barrel assembly-enhancing protease, at 537,857 to 540,502 _00528 Position (kb) 536 537 538Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 535.706 kb on - strandat 535.706 kb on - strandat 535.706 kb on - strandat 535.781 kb on - strandat 535.781 kb on - strandat 535.854 kb on - strandat 535.854 kb on - strandat 535.854 kb on - strandat 535.984 kb on + strandat 535.984 kb on + strandat 535.985 kb on - strandat 535.985 kb on - strandat 535.985 kb on - strandat 535.985 kb on - strandat 535.985 kb on - strandat 535.985 kb on - strandat 535.985 kb on - strandat 535.985 kb on - strandat 535.985 kb on - strandat 535.986 kb on - strandat 536.454 kb on + strand, within MPMX19_00526at 536.454 kb on + strand, within MPMX19_00526at 536.454 kb on + strand, within MPMX19_00526at 536.454 kb on + strand, within MPMX19_00526at 536.454 kb on + strand, within MPMX19_00526at 536.454 kb on + strand, within MPMX19_00526at 536.454 kb on + strand, within MPMX19_00526at 536.455 kb on - strand, within MPMX19_00526at 536.455 kb on - strand, within MPMX19_00526at 536.455 kb on - strand, within MPMX19_00526at 536.455 kb on - strand, within MPMX19_00526at 536.455 kb on - strand, within MPMX19_00526at 536.455 kb on - strand, within MPMX19_00526at 536.455 kb on - strand, within MPMX19_00526at 536.455 kb on - strand, within MPMX19_00526at 536.455 kb on - strand, within MPMX19_00526at 536.469 kb on + strand, within MPMX19_00526at 536.469 kb on + strand, within MPMX19_00526at 536.469 kb on + strand, within MPMX19_00526at 536.469 kb on + strand, within MPMX19_00526at 536.469 kb on + strand, within MPMX19_00526at 536.469 kb on + strand, within MPMX19_00526at 536.469 kb on + strand, within MPMX19_00526at 536.469 kb on + strand, within MPMX19_00526at 536.469 kb on + strand, within MPMX19_00526at 536.469 kb on + strand, within MPMX19_00526at 536.469 kb on + strand, within MPMX19_00526at 536.469 kb on + strand, within MPMX19_00526at 536.469 kb on + strand, within MPMX19_00526at 536.469 kb on + strand, within MPMX19_00526at 536.469 kb on + strand, within MPMX19_00526at 536.470 kb on - strand, within MPMX19_00526at 536.470 kb on - strand, within MPMX19_00526at 536.470 kb on - strand, within MPMX19_00526at 536.470 kb on - strand, within MPMX19_00526at 536.470 kb on - strand, within MPMX19_00526at 536.470 kb on - strand, within MPMX19_00526at 536.470 kb on - strand, within MPMX19_00526at 536.470 kb on - strand, within MPMX19_00526at 536.470 kb on - strand, within MPMX19_00526at 536.470 kb on - strand, within MPMX19_00526at 536.470 kb on - strand, within MPMX19_00526at 536.470 kb on - strand, within MPMX19_00526at 536.470 kb on - strand, within MPMX19_00526at 536.499 kb on + strand, within MPMX19_00526at 536.499 kb on + strand, within MPMX19_00526at 536.500 kb on - strand, within MPMX19_00526at 536.500 kb on - strand, within MPMX19_00526at 536.500 kb on - strand, within MPMX19_00526at 536.500 kb on - strand, within MPMX19_00526at 536.500 kb on - strand, within MPMX19_00526at 536.500 kb on - strand, within MPMX19_00526at 536.577 kb on + strand, within MPMX19_00526at 536.577 kb on + strand, within MPMX19_00526at 536.577 kb on + strand, within MPMX19_00526at 536.578 kb on - strand, within MPMX19_00526at 536.578 kb on - strand, within MPMX19_00526at 536.578 kb on - strand, within MPMX19_00526at 536.578 kb on - strand, within MPMX19_00526at 536.578 kb on - strand, within MPMX19_00526at 536.578 kb on - strand, within MPMX19_00526at 536.578 kb on - strand, within MPMX19_00526at 536.578 kb on - strand, within MPMX19_00526at 536.767 kb on - strand, within MPMX19_00526at 536.767 kb on - strand, within MPMX19_00526at 536.767 kb on - strand, within MPMX19_00526at 536.817 kb on + strand, within MPMX19_00526at 536.817 kb on + strand, within MPMX19_00526at 536.817 kb on + strand, within MPMX19_00526at 536.817 kb on + strand, within MPMX19_00526at 536.817 kb on + strand, within MPMX19_00526at 536.817 kb on + strand, within MPMX19_00526at 536.817 kb on + strand, within MPMX19_00526at 536.817 kb on + strand, within MPMX19_00526at 536.817 kb on + strand, within MPMX19_00526at 536.817 kb on + strand, within MPMX19_00526at 536.817 kb on + strand, within MPMX19_00526at 536.817 kb on + strand, within MPMX19_00526at 536.818 kb on - strand, within MPMX19_00526at 536.818 kb on - strand, within MPMX19_00526at 536.818 kb on - strand, within MPMX19_00526at 536.818 kb on - strand, within MPMX19_00526at 536.818 kb on - strand, within MPMX19_00526at 536.818 kb on - strand, within MPMX19_00526at 536.818 kb on - strand, within MPMX19_00526at 536.818 kb on - strand, within MPMX19_00526at 536.818 kb on - strand, within MPMX19_00526at 536.818 kb on - strand, within MPMX19_00526at 536.880 kb on + strand, within MPMX19_00526at 536.881 kb on - strand, within MPMX19_00526at 536.881 kb on - strand, within MPMX19_00526at 536.881 kb on - strand, within MPMX19_00526at 536.881 kb on - strand, within MPMX19_00526at 536.881 kb on - strand, within MPMX19_00526at 536.931 kb on + strand, within MPMX19_00526at 536.931 kb on + strand, within MPMX19_00526at 536.931 kb on + strand, within MPMX19_00526at 536.932 kb on - strand, within MPMX19_00526at 536.932 kb on - strand, within MPMX19_00526at 536.932 kb on - strand, within MPMX19_00526at 536.932 kb on - strand, within MPMX19_00526at 536.932 kb on - strand, within MPMX19_00526at 536.932 kb on - strand, within MPMX19_00526at 536.941 kb on - strandat 536.949 kb on + strandat 537.000 kb on + strandat 537.000 kb on + strandat 537.001 kb on - strandat 537.001 kb on - strandat 537.001 kb on - strandat 537.088 kb on + strandat 537.088 kb on + strandat 537.088 kb on + strandat 537.088 kb on + strandat 537.088 kb on + strandat 537.088 kb on + strandat 537.088 kb on + strandat 537.088 kb on + strandat 537.088 kb on + strandat 537.088 kb on + strandat 537.089 kb on - strandat 537.089 kb on - strandat 537.089 kb on - strandat 537.089 kb on - strandat 537.089 kb on - strandat 537.121 kb on + strandat 537.121 kb on + strandat 537.121 kb on + strandat 537.121 kb on + strandat 537.121 kb on + strandat 537.121 kb on + strandat 537.121 kb on + strandat 537.121 kb on + strandat 537.121 kb on + strandat 537.121 kb on + strandat 537.121 kb on + strandat 537.121 kb on + strandat 537.121 kb on + strandat 537.121 kb on + strandat 537.121 kb on + strandat 537.121 kb on + strandat 537.122 kb on - strandat 537.122 kb on - strandat 537.122 kb on - strandat 537.122 kb on - strandat 537.122 kb on - strandat 537.122 kb on - strandat 537.122 kb on - strandat 537.122 kb on - strandat 537.122 kb on - strandat 537.122 kb on - strandat 537.122 kb on - strandat 537.122 kb on - strandat 537.122 kb on - strandat 537.122 kb on - strandat 537.122 kb on - strandat 537.122 kb on - strandat 537.122 kb on - strandat 537.122 kb on - strandat 537.247 kb on + strand, within MPMX19_00527at 537.247 kb on + strand, within MPMX19_00527at 537.265 kb on + strand, within MPMX19_00527at 537.265 kb on + strand, within MPMX19_00527at 537.265 kb on + strand, within MPMX19_00527at 537.265 kb on + strand, within MPMX19_00527at 537.265 kb on + strand, within MPMX19_00527at 537.265 kb on + strand, within MPMX19_00527at 537.265 kb on + strand, within MPMX19_00527at 537.265 kb on + strand, within MPMX19_00527at 537.265 kb on + strand, within MPMX19_00527at 537.265 kb on + strand, within MPMX19_00527at 537.265 kb on + strand, within MPMX19_00527at 537.265 kb on + strand, within MPMX19_00527at 537.265 kb on + strand, within MPMX19_00527at 537.265 kb on + strand, within MPMX19_00527at 537.266 kb on - strand, within MPMX19_00527at 537.266 kb on - strand, within MPMX19_00527at 537.266 kb on - strand, within MPMX19_00527at 537.266 kb on - strand, within MPMX19_00527at 537.266 kb on - strand, within MPMX19_00527at 537.266 kb on - strand, within MPMX19_00527at 537.266 kb on - strand, within MPMX19_00527at 537.266 kb on - strand, within MPMX19_00527at 537.266 kb on - strand, within MPMX19_00527at 537.266 kb on - strand, within MPMX19_00527at 537.266 kb on - strand, within MPMX19_00527at 537.319 kb on + strand, within MPMX19_00527at 537.319 kb on + strand, within MPMX19_00527at 537.319 kb on + strand, within MPMX19_00527at 537.320 kb on - strand, within MPMX19_00527at 537.320 kb on - strand, within MPMX19_00527at 537.320 kb on - strand, within MPMX19_00527at 537.320 kb on - strand, within MPMX19_00527at 537.631 kb on + strand, within MPMX19_00527at 537.631 kb on + strand, within MPMX19_00527at 537.631 kb on + strand, within MPMX19_00527at 537.631 kb on + strand, within MPMX19_00527at 537.632 kb on - strand, within MPMX19_00527at 537.632 kb on - strand, within MPMX19_00527at 537.787 kb on + strandat 537.787 kb on + strandat 537.788 kb on - strandat 537.923 kb on + strandat 537.923 kb on + strandat 537.923 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
535,706 - -0.4
535,706 - -0.7
535,706 - -1.0
535,781 - -1.8
535,781 - +0.0
535,854 - +0.7
535,854 - +0.0
535,854 - -1.5
535,984 + -1.8
535,984 + -1.3
535,985 - -0.8
535,985 - -0.9
535,985 - -1.5
535,985 - -1.0
535,985 - -0.1
535,985 - +1.0
535,985 - -0.7
535,985 - +1.0
535,985 - -1.0
535,986 - -1.3
536,454 + MPMX19_00526 0.40 -0.8
536,454 + MPMX19_00526 0.40 -2.3
536,454 + MPMX19_00526 0.40 +0.0
536,454 + MPMX19_00526 0.40 -1.1
536,454 + MPMX19_00526 0.40 +0.0
536,454 + MPMX19_00526 0.40 -2.1
536,454 + MPMX19_00526 0.40 +0.5
536,455 - MPMX19_00526 0.41 -0.5
536,455 - MPMX19_00526 0.41 -1.2
536,455 - MPMX19_00526 0.41 -0.2
536,455 - MPMX19_00526 0.41 -0.5
536,455 - MPMX19_00526 0.41 -1.0
536,455 - MPMX19_00526 0.41 -2.1
536,455 - MPMX19_00526 0.41 +1.0
536,455 - MPMX19_00526 0.41 -2.0
536,455 - MPMX19_00526 0.41 +0.0
536,469 + MPMX19_00526 0.42 -3.0
536,469 + MPMX19_00526 0.42 +0.3
536,469 + MPMX19_00526 0.42 +0.5
536,469 + MPMX19_00526 0.42 -1.0
536,469 + MPMX19_00526 0.42 -0.8
536,469 + MPMX19_00526 0.42 +0.5
536,469 + MPMX19_00526 0.42 -2.3
536,469 + MPMX19_00526 0.42 -1.0
536,469 + MPMX19_00526 0.42 -0.3
536,469 + MPMX19_00526 0.42 -2.0
536,469 + MPMX19_00526 0.42 -0.5
536,469 + MPMX19_00526 0.42 -0.9
536,469 + MPMX19_00526 0.42 +0.5
536,469 + MPMX19_00526 0.42 -2.0
536,469 + MPMX19_00526 0.42 -2.0
536,470 - MPMX19_00526 0.42 +0.0
536,470 - MPMX19_00526 0.42 -0.5
536,470 - MPMX19_00526 0.42 -0.3
536,470 - MPMX19_00526 0.42 +1.5
536,470 - MPMX19_00526 0.42 -1.4
536,470 - MPMX19_00526 0.42 -0.5
536,470 - MPMX19_00526 0.42 -2.8
536,470 - MPMX19_00526 0.42 -1.0
536,470 - MPMX19_00526 0.42 -0.5
536,470 - MPMX19_00526 0.42 -1.2
536,470 - MPMX19_00526 0.42 +0.5
536,470 - MPMX19_00526 0.42 -1.3
536,470 - MPMX19_00526 0.42 -1.8
536,499 + MPMX19_00526 0.45 +0.5
536,499 + MPMX19_00526 0.45 +0.6
536,500 - MPMX19_00526 0.45 -1.0
536,500 - MPMX19_00526 0.45 -1.8
536,500 - MPMX19_00526 0.45 -0.5
536,500 - MPMX19_00526 0.45 +1.6
536,500 - MPMX19_00526 0.45 +0.2
536,500 - MPMX19_00526 0.45 -0.5
536,577 + MPMX19_00526 0.53 +0.3
536,577 + MPMX19_00526 0.53 -0.3
536,577 + MPMX19_00526 0.53 -0.2
536,578 - MPMX19_00526 0.53 -0.3
536,578 - MPMX19_00526 0.53 -0.3
536,578 - MPMX19_00526 0.53 -0.1
536,578 - MPMX19_00526 0.53 +2.0
536,578 - MPMX19_00526 0.53 +1.0
536,578 - MPMX19_00526 0.53 -0.0
536,578 - MPMX19_00526 0.53 -0.9
536,578 - MPMX19_00526 0.53 -1.8
536,767 - MPMX19_00526 0.72 +0.6
536,767 - MPMX19_00526 0.72 -0.3
536,767 - MPMX19_00526 0.72 -0.5
536,817 + MPMX19_00526 0.78 -0.5
536,817 + MPMX19_00526 0.78 -1.2
536,817 + MPMX19_00526 0.78 -0.5
536,817 + MPMX19_00526 0.78 -1.0
536,817 + MPMX19_00526 0.78 +1.0
536,817 + MPMX19_00526 0.78 -0.3
536,817 + MPMX19_00526 0.78 -2.0
536,817 + MPMX19_00526 0.78 -1.1
536,817 + MPMX19_00526 0.78 -2.1
536,817 + MPMX19_00526 0.78 -0.1
536,817 + MPMX19_00526 0.78 -0.5
536,817 + MPMX19_00526 0.78 +0.4
536,818 - MPMX19_00526 0.78 -1.0
536,818 - MPMX19_00526 0.78 +0.8
536,818 - MPMX19_00526 0.78 -0.4
536,818 - MPMX19_00526 0.78 -1.6
536,818 - MPMX19_00526 0.78 -0.5
536,818 - MPMX19_00526 0.78 +0.0
536,818 - MPMX19_00526 0.78 -1.1
536,818 - MPMX19_00526 0.78 +0.6
536,818 - MPMX19_00526 0.78 -0.7
536,818 - MPMX19_00526 0.78 -0.3
536,880 + MPMX19_00526 0.84 -0.8
536,881 - MPMX19_00526 0.84 +1.6
536,881 - MPMX19_00526 0.84 -2.0
536,881 - MPMX19_00526 0.84 +0.2
536,881 - MPMX19_00526 0.84 -0.8
536,881 - MPMX19_00526 0.84 -0.5
536,931 + MPMX19_00526 0.89 -1.4
536,931 + MPMX19_00526 0.89 -1.7
536,931 + MPMX19_00526 0.89 +1.0
536,932 - MPMX19_00526 0.89 -0.8
536,932 - MPMX19_00526 0.89 -0.5
536,932 - MPMX19_00526 0.89 +0.0
536,932 - MPMX19_00526 0.89 -1.7
536,932 - MPMX19_00526 0.89 -1.0
536,932 - MPMX19_00526 0.89 -1.8
536,941 - -1.3
536,949 + -0.8
537,000 + +1.6
537,000 + -1.0
537,001 - -1.2
537,001 - -1.0
537,001 - -1.0
537,088 + +0.2
537,088 + -1.0
537,088 + -1.0
537,088 + -1.6
537,088 + -0.5
537,088 + -1.1
537,088 + -0.5
537,088 + -2.1
537,088 + -0.4
537,088 + +1.5
537,089 - -0.4
537,089 - -0.6
537,089 - +0.8
537,089 - +1.0
537,089 - +1.0
537,121 + -0.3
537,121 + -0.3
537,121 + -1.8
537,121 + -2.0
537,121 + -1.3
537,121 + -1.1
537,121 + +1.2
537,121 + -0.7
537,121 + -1.1
537,121 + +0.5
537,121 + -2.3
537,121 + +0.9
537,121 + -1.1
537,121 + -0.3
537,121 + -1.0
537,121 + -1.8
537,122 - -0.3
537,122 - -2.0
537,122 - -1.3
537,122 - +1.5
537,122 - -1.0
537,122 - +0.2
537,122 - -1.5
537,122 - -0.8
537,122 - +1.0
537,122 - -1.8
537,122 - +0.5
537,122 - -0.3
537,122 - +0.3
537,122 - +0.3
537,122 - -0.2
537,122 - -1.5
537,122 - -1.1
537,122 - -1.3
537,247 + MPMX19_00527 0.25 -2.1
537,247 + MPMX19_00527 0.25 +0.2
537,265 + MPMX19_00527 0.27 -1.5
537,265 + MPMX19_00527 0.27 -1.1
537,265 + MPMX19_00527 0.27 -0.7
537,265 + MPMX19_00527 0.27 -1.1
537,265 + MPMX19_00527 0.27 -0.9
537,265 + MPMX19_00527 0.27 +1.0
537,265 + MPMX19_00527 0.27 +0.0
537,265 + MPMX19_00527 0.27 -0.3
537,265 + MPMX19_00527 0.27 -1.3
537,265 + MPMX19_00527 0.27 +0.5
537,265 + MPMX19_00527 0.27 -0.7
537,265 + MPMX19_00527 0.27 -1.8
537,265 + MPMX19_00527 0.27 +1.0
537,265 + MPMX19_00527 0.27 +0.0
537,266 - MPMX19_00527 0.28 +0.2
537,266 - MPMX19_00527 0.28 -1.0
537,266 - MPMX19_00527 0.28 -1.0
537,266 - MPMX19_00527 0.28 -0.8
537,266 - MPMX19_00527 0.28 +0.0
537,266 - MPMX19_00527 0.28 -0.2
537,266 - MPMX19_00527 0.28 -0.3
537,266 - MPMX19_00527 0.28 -1.3
537,266 - MPMX19_00527 0.28 -1.1
537,266 - MPMX19_00527 0.28 +0.0
537,266 - MPMX19_00527 0.28 +0.0
537,319 + MPMX19_00527 0.35 -2.1
537,319 + MPMX19_00527 0.35 -0.1
537,319 + MPMX19_00527 0.35 -0.3
537,320 - MPMX19_00527 0.35 -2.1
537,320 - MPMX19_00527 0.35 -0.8
537,320 - MPMX19_00527 0.35 +0.0
537,320 - MPMX19_00527 0.35 -0.8
537,631 + MPMX19_00527 0.78 +0.0
537,631 + MPMX19_00527 0.78 -1.0
537,631 + MPMX19_00527 0.78 +0.5
537,631 + MPMX19_00527 0.78 -0.8
537,632 - MPMX19_00527 0.78 -1.0
537,632 - MPMX19_00527 0.78 +0.0
537,787 + +0.6
537,787 + +0.9
537,788 - +0.4
537,923 + -0.3
537,923 + +1.0
537,923 + -0.2

Or see this region's nucleotide sequence