Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06983 and MPMX19_06984 overlap by 4 nucleotides MPMX19_06984 and MPMX19_06985 overlap by 4 nucleotides MPMX19_06985 and MPMX19_06986 are separated by 78 nucleotides
MPMX19_06983: MPMX19_06983 - putative FAD-linked oxidoreductase, at 264,908 to 266,422
_06983
MPMX19_06984: MPMX19_06984 - Mesaconyl-C(4)-CoA hydratase, at 266,419 to 267,294
_06984
MPMX19_06985: MPMX19_06985 - L-malyl-CoA/beta-methylmalyl-CoA lyase, at 267,291 to 268,199
_06985
MPMX19_06986: MPMX19_06986 - sugar efflux transporter, at 268,278 to 269,516
_06986
Position (kb) 266
267
268 Strain fitness (log2 ratio) -2
-1
0
1
2 at 265.439 kb on + strand, within MPMX19_06983 at 265.539 kb on - strand, within MPMX19_06983 at 265.808 kb on + strand, within MPMX19_06983 at 265.808 kb on + strand, within MPMX19_06983 at 265.808 kb on + strand, within MPMX19_06983 at 265.809 kb on - strand, within MPMX19_06983 at 265.809 kb on - strand, within MPMX19_06983 at 265.809 kb on - strand, within MPMX19_06983 at 266.132 kb on + strand, within MPMX19_06983 at 266.132 kb on + strand, within MPMX19_06983 at 266.132 kb on + strand, within MPMX19_06983 at 266.132 kb on + strand, within MPMX19_06983 at 266.132 kb on + strand, within MPMX19_06983 at 266.133 kb on - strand, within MPMX19_06983 at 266.133 kb on - strand, within MPMX19_06983 at 266.133 kb on - strand, within MPMX19_06983 at 266.133 kb on - strand, within MPMX19_06983 at 266.289 kb on - strand at 266.425 kb on + strand at 266.822 kb on + strand, within MPMX19_06984 at 266.822 kb on + strand, within MPMX19_06984 at 266.822 kb on + strand, within MPMX19_06984 at 266.823 kb on - strand, within MPMX19_06984 at 266.823 kb on - strand, within MPMX19_06984 at 266.998 kb on + strand, within MPMX19_06984 at 266.999 kb on - strand, within MPMX19_06984 at 266.999 kb on - strand, within MPMX19_06984 at 267.031 kb on + strand, within MPMX19_06984 at 268.006 kb on + strand, within MPMX19_06985 at 268.006 kb on + strand, within MPMX19_06985 at 268.007 kb on - strand, within MPMX19_06985 at 268.007 kb on - strand, within MPMX19_06985 at 268.065 kb on - strand, within MPMX19_06985 at 268.197 kb on + strand at 268.198 kb on - strand at 268.198 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 265,439 + MPMX19_06983 0.35 -1.1 265,539 - MPMX19_06983 0.42 +1.1 265,808 + MPMX19_06983 0.59 +2.2 265,808 + MPMX19_06983 0.59 +0.5 265,808 + MPMX19_06983 0.59 -0.5 265,809 - MPMX19_06983 0.59 -0.5 265,809 - MPMX19_06983 0.59 -0.9 265,809 - MPMX19_06983 0.59 -0.5 266,132 + MPMX19_06983 0.81 +0.6 266,132 + MPMX19_06983 0.81 +0.7 266,132 + MPMX19_06983 0.81 -0.8 266,132 + MPMX19_06983 0.81 -1.5 266,132 + MPMX19_06983 0.81 -0.2 266,133 - MPMX19_06983 0.81 +0.1 266,133 - MPMX19_06983 0.81 -0.1 266,133 - MPMX19_06983 0.81 -0.1 266,133 - MPMX19_06983 0.81 -1.5 266,289 - +0.2 266,425 + -0.5 266,822 + MPMX19_06984 0.46 -2.2 266,822 + MPMX19_06984 0.46 -1.2 266,822 + MPMX19_06984 0.46 -0.8 266,823 - MPMX19_06984 0.46 +0.1 266,823 - MPMX19_06984 0.46 +2.1 266,998 + MPMX19_06984 0.66 -0.7 266,999 - MPMX19_06984 0.66 +0.1 266,999 - MPMX19_06984 0.66 -0.9 267,031 + MPMX19_06984 0.70 -0.9 268,006 + MPMX19_06985 0.79 -0.3 268,006 + MPMX19_06985 0.79 -1.9 268,007 - MPMX19_06985 0.79 -1.5 268,007 - MPMX19_06985 0.79 +1.5 268,065 - MPMX19_06985 0.85 -2.1 268,197 + -1.0 268,198 - -0.5 268,198 - +0.9
Or see this region's nucleotide sequence