Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06466

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06464 and MPMX19_06465 are separated by 0 nucleotidesMPMX19_06465 and MPMX19_06466 overlap by 4 nucleotidesMPMX19_06466 and MPMX19_06467 are separated by 4 nucleotides MPMX19_06464: MPMX19_06464 - Tryptophan synthase beta chain, at 247,576 to 248,856 _06464 MPMX19_06465: MPMX19_06465 - hypothetical protein, at 248,857 to 249,768 _06465 MPMX19_06466: MPMX19_06466 - Vitamin B12 import ATP-binding protein BtuD, at 249,765 to 250,601 _06466 MPMX19_06467: MPMX19_06467 - hypothetical protein, at 250,606 to 251,637 _06467 Position (kb) 249 250 251Strain fitness (log2 ratio) -3 -2 -1 0 1at 248.859 kb on - strandat 248.859 kb on - strandat 248.886 kb on + strandat 248.975 kb on + strand, within MPMX19_06465at 248.975 kb on + strand, within MPMX19_06465at 248.975 kb on + strand, within MPMX19_06465at 249.143 kb on + strand, within MPMX19_06465at 249.144 kb on - strand, within MPMX19_06465at 249.144 kb on - strand, within MPMX19_06465at 249.144 kb on - strand, within MPMX19_06465at 249.144 kb on - strand, within MPMX19_06465at 249.144 kb on - strand, within MPMX19_06465at 249.164 kb on + strand, within MPMX19_06465at 249.165 kb on - strand, within MPMX19_06465at 249.165 kb on - strand, within MPMX19_06465at 249.165 kb on - strand, within MPMX19_06465at 249.428 kb on + strand, within MPMX19_06465at 249.429 kb on - strand, within MPMX19_06465at 249.429 kb on - strand, within MPMX19_06465at 249.477 kb on + strand, within MPMX19_06465at 249.695 kb on + strandat 249.696 kb on - strandat 249.696 kb on - strandat 249.927 kb on + strand, within MPMX19_06466at 249.927 kb on + strand, within MPMX19_06466at 249.927 kb on + strand, within MPMX19_06466at 249.928 kb on - strand, within MPMX19_06466at 249.928 kb on - strand, within MPMX19_06466at 249.928 kb on - strand, within MPMX19_06466at 249.928 kb on - strand, within MPMX19_06466at 249.928 kb on - strand, within MPMX19_06466at 249.928 kb on - strand, within MPMX19_06466at 250.405 kb on - strand, within MPMX19_06466at 250.444 kb on + strand, within MPMX19_06466at 250.444 kb on + strand, within MPMX19_06466at 250.444 kb on + strand, within MPMX19_06466at 250.444 kb on + strand, within MPMX19_06466at 250.444 kb on + strand, within MPMX19_06466at 250.481 kb on - strand, within MPMX19_06466at 250.481 kb on - strand, within MPMX19_06466at 250.481 kb on - strand, within MPMX19_06466at 250.481 kb on - strand, within MPMX19_06466at 250.481 kb on - strand, within MPMX19_06466at 250.481 kb on - strand, within MPMX19_06466at 250.481 kb on - strand, within MPMX19_06466at 250.481 kb on - strand, within MPMX19_06466at 250.481 kb on - strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.513 kb on + strand, within MPMX19_06466at 250.585 kb on + strandat 250.585 kb on + strandat 250.585 kb on + strandat 250.585 kb on + strandat 250.586 kb on - strandat 250.586 kb on - strandat 250.643 kb on + strandat 250.643 kb on + strandat 250.644 kb on - strandat 250.805 kb on + strand, within MPMX19_06467at 250.805 kb on + strand, within MPMX19_06467at 250.881 kb on - strand, within MPMX19_06467at 250.881 kb on - strand, within MPMX19_06467at 250.881 kb on - strand, within MPMX19_06467at 250.881 kb on - strand, within MPMX19_06467at 250.881 kb on - strand, within MPMX19_06467at 250.958 kb on + strand, within MPMX19_06467at 251.004 kb on - strand, within MPMX19_06467at 251.114 kb on + strand, within MPMX19_06467at 251.114 kb on + strand, within MPMX19_06467at 251.115 kb on - strand, within MPMX19_06467at 251.495 kb on + strand, within MPMX19_06467at 251.495 kb on + strand, within MPMX19_06467at 251.507 kb on + strand, within MPMX19_06467at 251.507 kb on + strand, within MPMX19_06467at 251.507 kb on + strand, within MPMX19_06467at 251.507 kb on + strand, within MPMX19_06467at 251.508 kb on - strand, within MPMX19_06467

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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248,859 - +1.5
248,859 - -0.7
248,886 + -0.7
248,975 + MPMX19_06465 0.13 +1.2
248,975 + MPMX19_06465 0.13 +0.9
248,975 + MPMX19_06465 0.13 -0.4
249,143 + MPMX19_06465 0.31 -0.8
249,144 - MPMX19_06465 0.31 -1.2
249,144 - MPMX19_06465 0.31 -0.4
249,144 - MPMX19_06465 0.31 -1.5
249,144 - MPMX19_06465 0.31 +0.3
249,144 - MPMX19_06465 0.31 +0.7
249,164 + MPMX19_06465 0.34 -0.4
249,165 - MPMX19_06465 0.34 +0.4
249,165 - MPMX19_06465 0.34 +1.2
249,165 - MPMX19_06465 0.34 +0.4
249,428 + MPMX19_06465 0.63 -0.7
249,429 - MPMX19_06465 0.63 +0.2
249,429 - MPMX19_06465 0.63 +0.8
249,477 + MPMX19_06465 0.68 +0.2
249,695 + -0.4
249,696 - -0.2
249,696 - +1.6
249,927 + MPMX19_06466 0.19 -0.2
249,927 + MPMX19_06466 0.19 +0.2
249,927 + MPMX19_06466 0.19 +1.5
249,928 - MPMX19_06466 0.19 +1.2
249,928 - MPMX19_06466 0.19 -0.0
249,928 - MPMX19_06466 0.19 +1.7
249,928 - MPMX19_06466 0.19 -0.8
249,928 - MPMX19_06466 0.19 -0.2
249,928 - MPMX19_06466 0.19 +0.6
250,405 - MPMX19_06466 0.76 -1.0
250,444 + MPMX19_06466 0.81 +0.6
250,444 + MPMX19_06466 0.81 +1.2
250,444 + MPMX19_06466 0.81 +1.6
250,444 + MPMX19_06466 0.81 -0.3
250,444 + MPMX19_06466 0.81 -0.1
250,481 - MPMX19_06466 0.86 -0.1
250,481 - MPMX19_06466 0.86 -0.8
250,481 - MPMX19_06466 0.86 -0.1
250,481 - MPMX19_06466 0.86 -2.8
250,481 - MPMX19_06466 0.86 -0.7
250,481 - MPMX19_06466 0.86 -1.2
250,481 - MPMX19_06466 0.86 -0.1
250,481 - MPMX19_06466 0.86 -0.3
250,481 - MPMX19_06466 0.86 +0.2
250,513 + MPMX19_06466 0.89 +0.4
250,513 + MPMX19_06466 0.89 -0.5
250,513 + MPMX19_06466 0.89 +1.2
250,513 + MPMX19_06466 0.89 -1.0
250,513 + MPMX19_06466 0.89 +1.6
250,513 + MPMX19_06466 0.89 -1.2
250,513 + MPMX19_06466 0.89 -0.0
250,513 + MPMX19_06466 0.89 +0.2
250,513 + MPMX19_06466 0.89 +0.2
250,513 + MPMX19_06466 0.89 +0.0
250,513 + MPMX19_06466 0.89 +0.6
250,585 + -1.7
250,585 + +0.2
250,585 + -0.2
250,585 + -0.2
250,586 - -1.2
250,586 - -1.2
250,643 + +0.3
250,643 + -0.8
250,644 - +0.8
250,805 + MPMX19_06467 0.19 +0.3
250,805 + MPMX19_06467 0.19 -0.2
250,881 - MPMX19_06467 0.27 -0.8
250,881 - MPMX19_06467 0.27 -0.7
250,881 - MPMX19_06467 0.27 +0.2
250,881 - MPMX19_06467 0.27 +0.7
250,881 - MPMX19_06467 0.27 +0.2
250,958 + MPMX19_06467 0.34 -0.8
251,004 - MPMX19_06467 0.39 -0.9
251,114 + MPMX19_06467 0.49 -1.4
251,114 + MPMX19_06467 0.49 +0.7
251,115 - MPMX19_06467 0.49 -0.4
251,495 + MPMX19_06467 0.86 -0.3
251,495 + MPMX19_06467 0.86 +0.2
251,507 + MPMX19_06467 0.87 -0.4
251,507 + MPMX19_06467 0.87 -0.6
251,507 + MPMX19_06467 0.87 -2.0
251,507 + MPMX19_06467 0.87 -0.7
251,508 - MPMX19_06467 0.87 -0.6

Or see this region's nucleotide sequence