Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05961

Experiment: NF_with_fullN

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NF_with_fullN
108,296	+		MPMX19_05959	0.48	+0.4
108,296	+		MPMX19_05959	0.48	+0.5
108,296	+		MPMX19_05959	0.48	-2.2
108,296	+		MPMX19_05959	0.48	-0.1
108,296	+		MPMX19_05959	0.48	+0.5
108,296	+		MPMX19_05959	0.48	+0.2
108,296	+		MPMX19_05959	0.48	+0.5
108,297	-		MPMX19_05959	0.49	-1.6
108,297	-		MPMX19_05959	0.49	-0.1
108,297	-		MPMX19_05959	0.49	+0.5
108,297	-		MPMX19_05959	0.49	+0.3
108,297	-		MPMX19_05959	0.49	-0.8
108,297	-		MPMX19_05959	0.49	+0.0
108,297	-		MPMX19_05959	0.49	-0.3
108,297	-		MPMX19_05959	0.49	-2.1
108,527	+		MPMX19_05959	0.75	-0.7
108,527	+		MPMX19_05959	0.75	-0.1
108,527	+		MPMX19_05959	0.75	-0.6
108,528	-		MPMX19_05959	0.75	-1.7
108,528	-		MPMX19_05959	0.75	-0.9
108,528	-		MPMX19_05959	0.75	+0.1
108,528	-		MPMX19_05959	0.75	-0.9
108,528	-		MPMX19_05959	0.75	-0.5
108,558	+		MPMX19_05959	0.79	+0.6
108,558	+		MPMX19_05959	0.79	-0.7
108,558	+		MPMX19_05959	0.79	+0.0
108,558	+		MPMX19_05959	0.79	-0.9
108,559	-		MPMX19_05959	0.79	-0.5
108,559	-		MPMX19_05959	0.79	-1.5
108,559	-		MPMX19_05959	0.79	-0.5
108,559	-		MPMX19_05959	0.79	-0.6
108,559	-		MPMX19_05959	0.79	-0.3
108,559	-		MPMX19_05959	0.79	-1.7
108,559	-		MPMX19_05959	0.79	-1.4
108,559	-		MPMX19_05959	0.79	-0.7
108,559	-		MPMX19_05959	0.79	-0.1
108,559	-		MPMX19_05959	0.79	+0.3
108,564	+		MPMX19_05959	0.79	-0.5
108,564	+		MPMX19_05959	0.79	+0.5
108,564	+		MPMX19_05959	0.79	+1.5
108,564	+		MPMX19_05959	0.79	+0.4
108,564	+		MPMX19_05959	0.79	+1.5
108,564	+		MPMX19_05959	0.79	+1.1
108,564	+		MPMX19_05959	0.79	-1.5
108,565	-		MPMX19_05959	0.79	-0.6
108,565	-		MPMX19_05959	0.79	-0.9
108,565	-		MPMX19_05959	0.79	-1.1
108,651	-		MPMX19_05959	0.89	-1.9
108,651	-		MPMX19_05959	0.89	-0.9
108,698	+				+0.1
108,698	+				+0.1
108,698	+				+1.3
108,698	+				+0.5
108,698	+				-0.2
108,698	+				-0.1
108,698	+				+0.2
108,698	+				-0.9
108,699	-				-1.5
108,699	-				-1.2
108,830	+				-0.7
108,831	-				-2.1
108,846	+				+0.9
108,846	+				-1.1
108,846	+				+0.2
108,846	+				-0.6
108,846	+				-1.7
108,846	+				-1.2
108,847	-				+0.1
108,847	-				+0.5
108,847	-				-0.7
108,847	-				-3.0
108,847	-				+0.1
108,847	-				-0.7
108,847	-				-0.5
108,847	-				-1.1
108,847	-				-1.1
109,161	+				-0.1
109,161	+				+0.1
109,161	+				+0.0
109,161	+				-2.1
109,161	+				+1.3
109,161	+				-1.1
109,161	+				-1.0
109,161	+				-0.1
109,161	+				+0.4
109,161	+				-1.5
109,162	-				-0.1
109,162	-				-0.3
109,162	-				-0.4
109,162	-				-1.1
109,162	-				+1.0
109,162	-				+0.3
109,162	-				-1.2
109,162	-				+0.5
109,162	-				+0.9
109,162	-				+0.4
109,162	-				-1.2
109,162	-				-1.0
109,162	-				-1.1
109,162	-				-2.8
109,162	-				-0.1
109,162	-				-0.1
109,215	+				-1.8
109,215	+				+0.3
109,215	+				-0.6
109,216	-				+1.4
109,216	-				-0.1
109,216	-				-1.1
109,216	-				-1.5
109,216	-				+0.3
109,216	-				-0.1
109,216	-				-1.3
109,466	+		MPMX19_05961	0.38	-1.0
109,466	+		MPMX19_05961	0.38	-2.1
109,466	+		MPMX19_05961	0.38	+0.4
109,466	+		MPMX19_05961	0.38	+0.3
109,466	+		MPMX19_05961	0.38	-0.9
109,466	+		MPMX19_05961	0.38	+1.3
109,466	+		MPMX19_05961	0.38	-1.1
109,466	+		MPMX19_05961	0.38	-1.2
109,466	+		MPMX19_05961	0.38	-0.5
109,466	+		MPMX19_05961	0.38	-0.2
109,466	+		MPMX19_05961	0.38	+0.1
109,466	+		MPMX19_05961	0.38	+0.7
109,466	+		MPMX19_05961	0.38	-0.6
109,466	+		MPMX19_05961	0.38	-0.1
109,466	+		MPMX19_05961	0.38	+1.4
109,466	+		MPMX19_05961	0.38	-0.4
109,466	+		MPMX19_05961	0.38	+1.2
109,466	+		MPMX19_05961	0.38	-1.1
109,466	+		MPMX19_05961	0.38	-1.9
109,467	-		MPMX19_05961	0.38	-0.7
109,467	-		MPMX19_05961	0.38	-0.8
109,467	-		MPMX19_05961	0.38	+0.3
109,467	-		MPMX19_05961	0.38	+0.3
109,467	-		MPMX19_05961	0.38	+1.6
109,467	-		MPMX19_05961	0.38	+0.2
109,467	-		MPMX19_05961	0.38	+1.5
109,467	-		MPMX19_05961	0.38	+0.5
109,467	-		MPMX19_05961	0.38	-0.2
109,467	-		MPMX19_05961	0.38	+0.5
109,467	-		MPMX19_05961	0.38	+0.3
109,467	-		MPMX19_05961	0.38	+0.9
109,467	-		MPMX19_05961	0.38	-0.5
109,467	-		MPMX19_05961	0.38	-1.1
109,467	-		MPMX19_05961	0.38	-0.3
109,467	-		MPMX19_05961	0.38	-1.0
109,712	+		MPMX19_05961	0.90	-1.1
109,712	+		MPMX19_05961	0.90	+0.3
109,712	+		MPMX19_05961	0.90	-0.5
109,713	-				-1.5
109,713	-				-1.1
109,713	-				-0.1
109,757	+				-1.7
109,757	+				-2.1
109,757	+				+0.7
109,757	+				-1.5
109,757	+				-0.7
109,758	-				-0.3
109,758	-				-1.3
109,758	-				+0.5
109,758	-				-2.2
109,758	-				-2.4
109,836	+				-2.6
109,836	+				-1.1
109,837	-				-0.5
109,837	-				+0.0
109,837	-				+0.2
109,837	-				-0.7
110,105	+		MPMX19_05962	0.17	-1.0
110,105	+		MPMX19_05962	0.17	-1.1
110,105	+		MPMX19_05962	0.17	+0.3
110,105	+		MPMX19_05962	0.17	-0.5
110,105	+		MPMX19_05962	0.17	-0.5
110,105	+		MPMX19_05962	0.17	-1.5
110,106	-		MPMX19_05962	0.18	+0.9
110,106	-		MPMX19_05962	0.18	-1.5
110,106	-		MPMX19_05962	0.18	+1.1
110,106	-		MPMX19_05962	0.18	+0.3
110,117	+		MPMX19_05962	0.18	+0.7
110,118	-		MPMX19_05962	0.18	-0.9
110,118	-		MPMX19_05962	0.18	+0.1
110,168	+		MPMX19_05962	0.22	+0.1
110,168	+		MPMX19_05962	0.22	-1.9
110,168	+		MPMX19_05962	0.22	-2.9
110,168	+		MPMX19_05962	0.22	-2.0
110,168	+		MPMX19_05962	0.22	-0.8
110,169	-		MPMX19_05962	0.22	-1.1
110,169	-		MPMX19_05962	0.22	+2.5
110,169	-		MPMX19_05962	0.22	-1.9
110,169	-		MPMX19_05962	0.22	-1.5
110,300	+		MPMX19_05962	0.32	-1.7
110,300	+		MPMX19_05962	0.32	+0.3
110,301	-		MPMX19_05962	0.32	+1.1
110,301	-		MPMX19_05962	0.32	+0.3
110,384	+		MPMX19_05962	0.38	-1.1
110,384	+		MPMX19_05962	0.38	-0.7
110,659	+		MPMX19_05962	0.59	-0.3
110,659	+		MPMX19_05962	0.59	-0.4
110,659	+		MPMX19_05962	0.59	-0.6
110,659	+		MPMX19_05962	0.59	-1.1
110,659	+		MPMX19_05962	0.59	-0.7
110,659	+		MPMX19_05962	0.59	-1.9
110,659	+		MPMX19_05962	0.59	-1.4
110,659	+		MPMX19_05962	0.59	+0.3
110,660	-		MPMX19_05962	0.59	-0.5
110,660	-		MPMX19_05962	0.59	-0.3
110,660	-		MPMX19_05962	0.59	-0.1
110,660	-		MPMX19_05962	0.59	-0.9
110,660	-		MPMX19_05962	0.59	-1.5
110,660	-		MPMX19_05962	0.59	+2.9
110,660	-		MPMX19_05962	0.59	-0.6
110,660	-		MPMX19_05962	0.59	+0.5
110,660	-		MPMX19_05962	0.59	-0.4
110,660	-		MPMX19_05962	0.59	+0.6