Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05440

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05439 and MPMX19_05440 are separated by 73 nucleotidesMPMX19_05440 and MPMX19_05441 are separated by 37 nucleotides MPMX19_05439: MPMX19_05439 - hypothetical protein, at 128,704 to 129,723 _05439 MPMX19_05440: MPMX19_05440 - hypothetical protein, at 129,797 to 130,318 _05440 MPMX19_05441: MPMX19_05441 - RNA polymerase sigma factor RpoH, at 130,356 to 131,246 _05441 Position (kb) 129 130 131Strain fitness (log2 ratio) -2 -1 0 1 2at 128.801 kb on + strandat 128.802 kb on - strandat 128.802 kb on - strandat 128.802 kb on - strandat 128.958 kb on + strand, within MPMX19_05439at 128.958 kb on + strand, within MPMX19_05439at 128.959 kb on - strand, within MPMX19_05439at 129.152 kb on + strand, within MPMX19_05439at 129.152 kb on + strand, within MPMX19_05439at 129.152 kb on + strand, within MPMX19_05439at 129.152 kb on + strand, within MPMX19_05439at 129.152 kb on + strand, within MPMX19_05439at 129.152 kb on + strand, within MPMX19_05439at 129.152 kb on + strand, within MPMX19_05439at 129.152 kb on + strand, within MPMX19_05439at 129.153 kb on - strand, within MPMX19_05439at 129.153 kb on - strand, within MPMX19_05439at 129.153 kb on - strand, within MPMX19_05439at 129.153 kb on - strand, within MPMX19_05439at 129.153 kb on - strand, within MPMX19_05439at 129.153 kb on - strand, within MPMX19_05439at 129.287 kb on + strand, within MPMX19_05439at 129.287 kb on + strand, within MPMX19_05439at 129.288 kb on - strand, within MPMX19_05439at 129.288 kb on - strand, within MPMX19_05439at 129.288 kb on - strand, within MPMX19_05439at 129.414 kb on + strand, within MPMX19_05439at 129.414 kb on + strand, within MPMX19_05439at 129.414 kb on + strand, within MPMX19_05439at 129.414 kb on + strand, within MPMX19_05439at 129.415 kb on - strand, within MPMX19_05439at 129.415 kb on - strand, within MPMX19_05439at 129.438 kb on + strand, within MPMX19_05439at 129.684 kb on + strandat 129.685 kb on - strandat 129.685 kb on - strandat 129.744 kb on + strandat 129.744 kb on + strandat 129.745 kb on - strandat 129.755 kb on + strandat 129.755 kb on + strandat 129.755 kb on + strandat 129.756 kb on - strandat 129.756 kb on - strandat 129.756 kb on - strandat 129.778 kb on + strandat 129.778 kb on + strandat 129.778 kb on + strandat 129.778 kb on + strandat 129.778 kb on + strandat 129.779 kb on - strandat 129.779 kb on - strandat 129.779 kb on - strandat 129.779 kb on - strandat 129.921 kb on + strand, within MPMX19_05440at 129.921 kb on + strand, within MPMX19_05440at 129.921 kb on + strand, within MPMX19_05440at 129.921 kb on + strand, within MPMX19_05440at 129.921 kb on + strand, within MPMX19_05440at 129.921 kb on + strand, within MPMX19_05440at 129.921 kb on + strand, within MPMX19_05440at 129.922 kb on - strand, within MPMX19_05440at 129.922 kb on - strand, within MPMX19_05440at 129.922 kb on - strand, within MPMX19_05440at 129.922 kb on - strand, within MPMX19_05440at 130.132 kb on + strand, within MPMX19_05440at 130.132 kb on + strand, within MPMX19_05440at 130.132 kb on + strand, within MPMX19_05440at 130.132 kb on + strand, within MPMX19_05440at 130.133 kb on - strand, within MPMX19_05440at 130.133 kb on - strand, within MPMX19_05440at 130.357 kb on + strandat 130.357 kb on + strandat 130.358 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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128,801 + -0.8
128,802 - +0.4
128,802 - +0.4
128,802 - -0.4
128,958 + MPMX19_05439 0.25 -0.5
128,958 + MPMX19_05439 0.25 -0.7
128,959 - MPMX19_05439 0.25 -1.2
129,152 + MPMX19_05439 0.44 +0.2
129,152 + MPMX19_05439 0.44 +0.1
129,152 + MPMX19_05439 0.44 +0.2
129,152 + MPMX19_05439 0.44 +0.4
129,152 + MPMX19_05439 0.44 +1.5
129,152 + MPMX19_05439 0.44 +0.6
129,152 + MPMX19_05439 0.44 +0.2
129,152 + MPMX19_05439 0.44 -0.5
129,153 - MPMX19_05439 0.44 -0.4
129,153 - MPMX19_05439 0.44 -0.2
129,153 - MPMX19_05439 0.44 -0.2
129,153 - MPMX19_05439 0.44 -1.5
129,153 - MPMX19_05439 0.44 +0.8
129,153 - MPMX19_05439 0.44 +0.3
129,287 + MPMX19_05439 0.57 -1.2
129,287 + MPMX19_05439 0.57 +0.2
129,288 - MPMX19_05439 0.57 -0.5
129,288 - MPMX19_05439 0.57 +0.5
129,288 - MPMX19_05439 0.57 -1.4
129,414 + MPMX19_05439 0.70 -0.8
129,414 + MPMX19_05439 0.70 +0.8
129,414 + MPMX19_05439 0.70 -0.2
129,414 + MPMX19_05439 0.70 -1.1
129,415 - MPMX19_05439 0.70 -0.7
129,415 - MPMX19_05439 0.70 +0.8
129,438 + MPMX19_05439 0.72 -1.0
129,684 + +1.8
129,685 - -1.2
129,685 - -1.5
129,744 + +0.8
129,744 + -1.0
129,745 - -1.2
129,755 + -0.8
129,755 + +0.2
129,755 + -0.6
129,756 - -0.8
129,756 - +0.6
129,756 - -0.0
129,778 + -0.8
129,778 + +0.2
129,778 + -1.5
129,778 + -0.2
129,778 + -2.2
129,779 - +0.6
129,779 - +0.8
129,779 - -0.2
129,779 - +0.0
129,921 + MPMX19_05440 0.24 -0.2
129,921 + MPMX19_05440 0.24 -1.2
129,921 + MPMX19_05440 0.24 -0.2
129,921 + MPMX19_05440 0.24 -1.2
129,921 + MPMX19_05440 0.24 +1.8
129,921 + MPMX19_05440 0.24 +0.4
129,921 + MPMX19_05440 0.24 -1.0
129,922 - MPMX19_05440 0.24 -1.1
129,922 - MPMX19_05440 0.24 -0.6
129,922 - MPMX19_05440 0.24 -1.8
129,922 - MPMX19_05440 0.24 -2.2
130,132 + MPMX19_05440 0.64 -1.5
130,132 + MPMX19_05440 0.64 -1.2
130,132 + MPMX19_05440 0.64 -1.5
130,132 + MPMX19_05440 0.64 +2.4
130,133 - MPMX19_05440 0.64 -0.5
130,133 - MPMX19_05440 0.64 +0.2
130,357 + -0.8
130,357 + -0.3
130,358 - -0.5

Or see this region's nucleotide sequence