Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05410

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_05409 and MPMX19_05410 are separated by 11 nucleotidesMPMX19_05410 and MPMX19_05411 are separated by 5 nucleotides MPMX19_05409: MPMX19_05409 - hypothetical protein, at 89,898 to 91,097 _05409 MPMX19_05410: MPMX19_05410 - Dipeptide transport system permease protein DppB, at 91,109 to 92,140 _05410 MPMX19_05411: MPMX19_05411 - Periplasmic alpha-galactoside-binding protein, at 92,146 to 94,005 _05411 Position (kb) 91 92 93Strain fitness (log2 ratio) -2 -1 0 1 2 3at 90.449 kb on - strand, within MPMX19_05409at 90.449 kb on - strand, within MPMX19_05409at 90.652 kb on + strand, within MPMX19_05409at 90.721 kb on + strand, within MPMX19_05409at 90.721 kb on + strand, within MPMX19_05409at 90.721 kb on + strand, within MPMX19_05409at 90.814 kb on + strand, within MPMX19_05409at 90.814 kb on + strand, within MPMX19_05409at 90.815 kb on - strand, within MPMX19_05409at 90.815 kb on - strand, within MPMX19_05409at 90.815 kb on - strand, within MPMX19_05409at 90.815 kb on - strand, within MPMX19_05409at 90.815 kb on - strand, within MPMX19_05409at 90.815 kb on - strand, within MPMX19_05409at 90.847 kb on + strand, within MPMX19_05409at 90.848 kb on - strand, within MPMX19_05409at 90.883 kb on + strand, within MPMX19_05409at 90.883 kb on + strand, within MPMX19_05409at 90.883 kb on + strand, within MPMX19_05409at 90.883 kb on + strand, within MPMX19_05409at 90.883 kb on + strand, within MPMX19_05409at 90.883 kb on - strand, within MPMX19_05409at 90.884 kb on - strand, within MPMX19_05409at 90.884 kb on - strand, within MPMX19_05409at 90.884 kb on - strand, within MPMX19_05409at 90.884 kb on - strand, within MPMX19_05409at 91.016 kb on - strandat 91.033 kb on + strandat 91.033 kb on + strandat 91.033 kb on + strandat 91.033 kb on + strandat 91.033 kb on + strandat 91.033 kb on + strandat 91.033 kb on + strandat 91.033 kb on + strandat 91.033 kb on + strandat 91.033 kb on + strandat 91.033 kb on + strandat 91.033 kb on + strandat 91.033 kb on + strandat 91.033 kb on + strandat 91.034 kb on - strandat 91.034 kb on - strandat 91.034 kb on - strandat 91.034 kb on - strandat 91.034 kb on - strandat 91.034 kb on - strandat 91.034 kb on - strandat 91.034 kb on - strandat 91.034 kb on - strandat 91.034 kb on - strandat 91.034 kb on - strandat 91.034 kb on - strandat 91.034 kb on - strandat 91.034 kb on - strandat 91.034 kb on - strandat 91.034 kb on - strandat 91.440 kb on + strand, within MPMX19_05410at 91.440 kb on + strand, within MPMX19_05410at 91.440 kb on + strand, within MPMX19_05410at 91.440 kb on + strand, within MPMX19_05410at 91.440 kb on + strand, within MPMX19_05410at 91.440 kb on + strand, within MPMX19_05410at 91.440 kb on + strand, within MPMX19_05410at 91.440 kb on + strand, within MPMX19_05410at 91.440 kb on + strand, within MPMX19_05410at 91.440 kb on + strand, within MPMX19_05410at 91.440 kb on + strand, within MPMX19_05410at 91.441 kb on - strand, within MPMX19_05410at 91.441 kb on - strand, within MPMX19_05410at 91.441 kb on - strand, within MPMX19_05410at 91.441 kb on - strand, within MPMX19_05410at 91.441 kb on - strand, within MPMX19_05410at 91.441 kb on - strand, within MPMX19_05410at 91.441 kb on - strand, within MPMX19_05410at 91.441 kb on - strand, within MPMX19_05410at 91.441 kb on - strand, within MPMX19_05410at 91.441 kb on - strand, within MPMX19_05410at 91.441 kb on - strand, within MPMX19_05410at 91.441 kb on - strand, within MPMX19_05410at 91.584 kb on + strand, within MPMX19_05410at 91.584 kb on + strand, within MPMX19_05410at 91.584 kb on + strand, within MPMX19_05410at 91.584 kb on + strand, within MPMX19_05410at 91.584 kb on + strand, within MPMX19_05410at 91.584 kb on + strand, within MPMX19_05410at 91.584 kb on + strand, within MPMX19_05410at 91.585 kb on - strand, within MPMX19_05410at 91.585 kb on - strand, within MPMX19_05410at 91.585 kb on - strand, within MPMX19_05410at 91.585 kb on - strand, within MPMX19_05410at 91.585 kb on - strand, within MPMX19_05410at 91.585 kb on - strand, within MPMX19_05410at 91.585 kb on - strand, within MPMX19_05410at 91.585 kb on - strand, within MPMX19_05410at 91.585 kb on - strand, within MPMX19_05410at 91.635 kb on + strand, within MPMX19_05410at 91.635 kb on + strand, within MPMX19_05410at 91.635 kb on + strand, within MPMX19_05410at 91.636 kb on - strand, within MPMX19_05410at 91.636 kb on - strand, within MPMX19_05410at 91.638 kb on + strand, within MPMX19_05410at 91.638 kb on + strand, within MPMX19_05410at 91.638 kb on + strand, within MPMX19_05410at 91.638 kb on + strand, within MPMX19_05410at 91.638 kb on + strand, within MPMX19_05410at 91.638 kb on + strand, within MPMX19_05410at 91.638 kb on + strand, within MPMX19_05410at 91.638 kb on + strand, within MPMX19_05410at 91.638 kb on + strand, within MPMX19_05410at 91.638 kb on + strand, within MPMX19_05410at 91.638 kb on + strand, within MPMX19_05410at 91.638 kb on + strand, within MPMX19_05410at 91.639 kb on - strand, within MPMX19_05410at 91.639 kb on - strand, within MPMX19_05410at 91.639 kb on - strand, within MPMX19_05410at 91.639 kb on - strand, within MPMX19_05410at 91.639 kb on - strand, within MPMX19_05410at 91.639 kb on - strand, within MPMX19_05410at 91.639 kb on - strand, within MPMX19_05410at 91.639 kb on - strand, within MPMX19_05410at 91.639 kb on - strand, within MPMX19_05410at 91.639 kb on - strand, within MPMX19_05410at 91.639 kb on - strand, within MPMX19_05410at 91.686 kb on + strand, within MPMX19_05410at 91.686 kb on + strand, within MPMX19_05410at 91.686 kb on + strand, within MPMX19_05410at 91.686 kb on + strand, within MPMX19_05410at 91.686 kb on + strand, within MPMX19_05410at 91.687 kb on - strand, within MPMX19_05410at 91.687 kb on - strand, within MPMX19_05410at 91.687 kb on - strand, within MPMX19_05410at 91.687 kb on - strand, within MPMX19_05410at 91.687 kb on - strand, within MPMX19_05410at 91.687 kb on - strand, within MPMX19_05410at 91.707 kb on + strand, within MPMX19_05410at 91.707 kb on + strand, within MPMX19_05410at 91.708 kb on - strand, within MPMX19_05410at 91.708 kb on - strand, within MPMX19_05410at 91.708 kb on - strand, within MPMX19_05410at 91.767 kb on + strand, within MPMX19_05410at 91.768 kb on - strand, within MPMX19_05410at 91.768 kb on - strand, within MPMX19_05410at 91.929 kb on + strand, within MPMX19_05410at 91.929 kb on + strand, within MPMX19_05410at 91.929 kb on + strand, within MPMX19_05410at 91.929 kb on + strand, within MPMX19_05410at 91.929 kb on + strand, within MPMX19_05410at 91.929 kb on + strand, within MPMX19_05410at 91.929 kb on + strand, within MPMX19_05410at 91.929 kb on + strand, within MPMX19_05410at 91.929 kb on + strand, within MPMX19_05410at 91.929 kb on + strand, within MPMX19_05410at 91.929 kb on + strand, within MPMX19_05410at 91.929 kb on + strand, within MPMX19_05410at 91.930 kb on - strand, within MPMX19_05410at 91.930 kb on - strand, within MPMX19_05410at 91.930 kb on - strand, within MPMX19_05410at 91.959 kb on + strand, within MPMX19_05410at 91.959 kb on + strand, within MPMX19_05410at 91.959 kb on + strand, within MPMX19_05410at 91.960 kb on - strand, within MPMX19_05410at 92.040 kb on + strandat 92.040 kb on + strandat 92.041 kb on - strandat 92.041 kb on - strandat 92.041 kb on - strandat 92.041 kb on - strandat 92.041 kb on - strandat 92.041 kb on - strandat 92.041 kb on - strandat 92.207 kb on + strandat 92.207 kb on + strandat 92.207 kb on + strandat 92.207 kb on + strandat 92.207 kb on + strandat 92.207 kb on + strandat 92.207 kb on + strandat 92.208 kb on - strandat 92.208 kb on - strandat 92.208 kb on - strandat 92.208 kb on - strandat 92.208 kb on - strandat 92.208 kb on - strandat 92.208 kb on - strandat 92.208 kb on - strandat 92.237 kb on + strandat 92.237 kb on + strandat 92.237 kb on + strandat 92.238 kb on - strandat 92.238 kb on - strandat 92.489 kb on + strand, within MPMX19_05411at 92.489 kb on + strand, within MPMX19_05411at 92.489 kb on + strand, within MPMX19_05411at 92.489 kb on + strand, within MPMX19_05411at 92.489 kb on + strand, within MPMX19_05411at 92.490 kb on - strand, within MPMX19_05411at 92.490 kb on - strand, within MPMX19_05411at 92.490 kb on - strand, within MPMX19_05411at 92.490 kb on - strand, within MPMX19_05411at 92.490 kb on - strand, within MPMX19_05411at 92.490 kb on - strand, within MPMX19_05411at 92.490 kb on - strand, within MPMX19_05411at 92.490 kb on - strand, within MPMX19_05411at 92.490 kb on - strand, within MPMX19_05411at 92.492 kb on + strand, within MPMX19_05411at 92.492 kb on + strand, within MPMX19_05411at 92.492 kb on + strand, within MPMX19_05411at 92.492 kb on + strand, within MPMX19_05411at 92.492 kb on + strand, within MPMX19_05411at 92.493 kb on - strand, within MPMX19_05411at 92.493 kb on - strand, within MPMX19_05411at 92.493 kb on - strand, within MPMX19_05411at 92.493 kb on - strand, within MPMX19_05411at 92.493 kb on - strand, within MPMX19_05411at 92.618 kb on + strand, within MPMX19_05411at 92.618 kb on + strand, within MPMX19_05411at 92.618 kb on + strand, within MPMX19_05411at 92.618 kb on + strand, within MPMX19_05411at 92.618 kb on + strand, within MPMX19_05411at 92.619 kb on - strand, within MPMX19_05411at 92.619 kb on - strand, within MPMX19_05411at 92.619 kb on - strand, within MPMX19_05411at 92.619 kb on - strand, within MPMX19_05411at 92.619 kb on - strand, within MPMX19_05411at 92.619 kb on - strand, within MPMX19_05411at 92.783 kb on + strand, within MPMX19_05411at 92.784 kb on - strand, within MPMX19_05411at 92.784 kb on - strand, within MPMX19_05411at 92.849 kb on + strand, within MPMX19_05411at 93.032 kb on + strand, within MPMX19_05411at 93.032 kb on + strand, within MPMX19_05411at 93.032 kb on + strand, within MPMX19_05411at 93.032 kb on + strand, within MPMX19_05411at 93.032 kb on + strand, within MPMX19_05411at 93.032 kb on + strand, within MPMX19_05411at 93.032 kb on + strand, within MPMX19_05411at 93.033 kb on - strand, within MPMX19_05411at 93.033 kb on - strand, within MPMX19_05411at 93.033 kb on - strand, within MPMX19_05411at 93.033 kb on - strand, within MPMX19_05411at 93.047 kb on + strand, within MPMX19_05411at 93.048 kb on - strand, within MPMX19_05411at 93.048 kb on - strand, within MPMX19_05411

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
90,449 - MPMX19_05409 0.46 +0.4
90,449 - MPMX19_05409 0.46 -0.2
90,652 + MPMX19_05409 0.63 +0.2
90,721 + MPMX19_05409 0.69 +3.0
90,721 + MPMX19_05409 0.69 +0.4
90,721 + MPMX19_05409 0.69 -1.2
90,814 + MPMX19_05409 0.76 -0.7
90,814 + MPMX19_05409 0.76 -0.4
90,815 - MPMX19_05409 0.76 -0.8
90,815 - MPMX19_05409 0.76 -1.0
90,815 - MPMX19_05409 0.76 +1.2
90,815 - MPMX19_05409 0.76 -0.8
90,815 - MPMX19_05409 0.76 -0.5
90,815 - MPMX19_05409 0.76 +0.1
90,847 + MPMX19_05409 0.79 +0.8
90,848 - MPMX19_05409 0.79 +1.2
90,883 + MPMX19_05409 0.82 +0.8
90,883 + MPMX19_05409 0.82 -0.2
90,883 + MPMX19_05409 0.82 +0.4
90,883 + MPMX19_05409 0.82 +0.1
90,883 + MPMX19_05409 0.82 -1.8
90,883 - MPMX19_05409 0.82 +0.8
90,884 - MPMX19_05409 0.82 +0.2
90,884 - MPMX19_05409 0.82 -0.8
90,884 - MPMX19_05409 0.82 +0.8
90,884 - MPMX19_05409 0.82 +0.3
91,016 - -0.2
91,033 + -0.3
91,033 + +1.4
91,033 + -0.9
91,033 + -0.7
91,033 + +0.2
91,033 + -0.6
91,033 + +0.2
91,033 + +0.2
91,033 + +1.5
91,033 + +1.0
91,033 + +1.0
91,033 + +1.2
91,033 + +0.5
91,033 + +0.1
91,034 - -0.5
91,034 - -0.2
91,034 - +1.2
91,034 - -0.4
91,034 - -0.5
91,034 - +0.8
91,034 - +0.1
91,034 - +0.6
91,034 - -0.8
91,034 - -0.2
91,034 - +0.8
91,034 - -0.4
91,034 - +1.1
91,034 - +0.0
91,034 - -0.8
91,034 - -0.2
91,440 + MPMX19_05410 0.32 +1.2
91,440 + MPMX19_05410 0.32 -0.7
91,440 + MPMX19_05410 0.32 -2.0
91,440 + MPMX19_05410 0.32 -0.5
91,440 + MPMX19_05410 0.32 +0.8
91,440 + MPMX19_05410 0.32 +0.2
91,440 + MPMX19_05410 0.32 -0.8
91,440 + MPMX19_05410 0.32 -2.0
91,440 + MPMX19_05410 0.32 +0.2
91,440 + MPMX19_05410 0.32 -1.2
91,440 + MPMX19_05410 0.32 +0.5
91,441 - MPMX19_05410 0.32 -0.0
91,441 - MPMX19_05410 0.32 -0.5
91,441 - MPMX19_05410 0.32 +0.1
91,441 - MPMX19_05410 0.32 +0.4
91,441 - MPMX19_05410 0.32 -0.8
91,441 - MPMX19_05410 0.32 -0.2
91,441 - MPMX19_05410 0.32 +1.8
91,441 - MPMX19_05410 0.32 +1.8
91,441 - MPMX19_05410 0.32 +1.0
91,441 - MPMX19_05410 0.32 +0.1
91,441 - MPMX19_05410 0.32 +0.6
91,441 - MPMX19_05410 0.32 +1.4
91,584 + MPMX19_05410 0.46 -1.0
91,584 + MPMX19_05410 0.46 -0.8
91,584 + MPMX19_05410 0.46 +0.4
91,584 + MPMX19_05410 0.46 -1.8
91,584 + MPMX19_05410 0.46 +0.8
91,584 + MPMX19_05410 0.46 +0.8
91,584 + MPMX19_05410 0.46 -1.2
91,585 - MPMX19_05410 0.46 +0.9
91,585 - MPMX19_05410 0.46 +0.5
91,585 - MPMX19_05410 0.46 +0.1
91,585 - MPMX19_05410 0.46 +2.3
91,585 - MPMX19_05410 0.46 +0.2
91,585 - MPMX19_05410 0.46 +0.7
91,585 - MPMX19_05410 0.46 +0.2
91,585 - MPMX19_05410 0.46 -0.2
91,585 - MPMX19_05410 0.46 -0.0
91,635 + MPMX19_05410 0.51 -0.5
91,635 + MPMX19_05410 0.51 +0.0
91,635 + MPMX19_05410 0.51 +1.4
91,636 - MPMX19_05410 0.51 -0.8
91,636 - MPMX19_05410 0.51 +0.3
91,638 + MPMX19_05410 0.51 -0.2
91,638 + MPMX19_05410 0.51 +0.1
91,638 + MPMX19_05410 0.51 +1.5
91,638 + MPMX19_05410 0.51 +0.2
91,638 + MPMX19_05410 0.51 +1.8
91,638 + MPMX19_05410 0.51 +0.1
91,638 + MPMX19_05410 0.51 -0.2
91,638 + MPMX19_05410 0.51 -0.0
91,638 + MPMX19_05410 0.51 -0.8
91,638 + MPMX19_05410 0.51 +0.1
91,638 + MPMX19_05410 0.51 +0.2
91,638 + MPMX19_05410 0.51 +0.0
91,639 - MPMX19_05410 0.51 -1.3
91,639 - MPMX19_05410 0.51 +0.4
91,639 - MPMX19_05410 0.51 -0.0
91,639 - MPMX19_05410 0.51 -0.3
91,639 - MPMX19_05410 0.51 +0.2
91,639 - MPMX19_05410 0.51 -0.7
91,639 - MPMX19_05410 0.51 +0.3
91,639 - MPMX19_05410 0.51 +0.8
91,639 - MPMX19_05410 0.51 +1.8
91,639 - MPMX19_05410 0.51 -0.5
91,639 - MPMX19_05410 0.51 +0.2
91,686 + MPMX19_05410 0.56 +0.5
91,686 + MPMX19_05410 0.56 -0.2
91,686 + MPMX19_05410 0.56 -2.6
91,686 + MPMX19_05410 0.56 +0.2
91,686 + MPMX19_05410 0.56 +0.9
91,687 - MPMX19_05410 0.56 +1.2
91,687 - MPMX19_05410 0.56 -0.2
91,687 - MPMX19_05410 0.56 +2.1
91,687 - MPMX19_05410 0.56 -0.0
91,687 - MPMX19_05410 0.56 -0.5
91,687 - MPMX19_05410 0.56 -1.0
91,707 + MPMX19_05410 0.58 +1.6
91,707 + MPMX19_05410 0.58 +2.8
91,708 - MPMX19_05410 0.58 -0.5
91,708 - MPMX19_05410 0.58 -0.2
91,708 - MPMX19_05410 0.58 +0.3
91,767 + MPMX19_05410 0.64 +1.4
91,768 - MPMX19_05410 0.64 -0.8
91,768 - MPMX19_05410 0.64 +0.2
91,929 + MPMX19_05410 0.79 -0.2
91,929 + MPMX19_05410 0.79 +0.2
91,929 + MPMX19_05410 0.79 +0.0
91,929 + MPMX19_05410 0.79 -1.0
91,929 + MPMX19_05410 0.79 +0.0
91,929 + MPMX19_05410 0.79 +1.5
91,929 + MPMX19_05410 0.79 -2.2
91,929 + MPMX19_05410 0.79 -0.8
91,929 + MPMX19_05410 0.79 +0.1
91,929 + MPMX19_05410 0.79 -0.8
91,929 + MPMX19_05410 0.79 +0.2
91,929 + MPMX19_05410 0.79 +0.2
91,930 - MPMX19_05410 0.80 +0.1
91,930 - MPMX19_05410 0.80 -0.2
91,930 - MPMX19_05410 0.80 -0.2
91,959 + MPMX19_05410 0.82 +0.1
91,959 + MPMX19_05410 0.82 +0.8
91,959 + MPMX19_05410 0.82 +1.2
91,960 - MPMX19_05410 0.82 +0.4
92,040 + +0.8
92,040 + +0.5
92,041 - -1.5
92,041 - -0.3
92,041 - +1.1
92,041 - +1.4
92,041 - +1.0
92,041 - -1.0
92,041 - -0.4
92,207 + +0.7
92,207 + +1.3
92,207 + -0.3
92,207 + +0.5
92,207 + +0.6
92,207 + +0.7
92,207 + -0.8
92,208 - +1.4
92,208 - +1.7
92,208 - +0.5
92,208 - +0.2
92,208 - +0.3
92,208 - +0.8
92,208 - +0.5
92,208 - +1.5
92,237 + -0.5
92,237 + +0.3
92,237 + +0.2
92,238 - +0.5
92,238 - +0.5
92,489 + MPMX19_05411 0.18 +0.8
92,489 + MPMX19_05411 0.18 +0.3
92,489 + MPMX19_05411 0.18 -0.4
92,489 + MPMX19_05411 0.18 +0.3
92,489 + MPMX19_05411 0.18 -1.0
92,490 - MPMX19_05411 0.18 +0.7
92,490 - MPMX19_05411 0.18 +1.2
92,490 - MPMX19_05411 0.18 +0.8
92,490 - MPMX19_05411 0.18 +0.8
92,490 - MPMX19_05411 0.18 +0.8
92,490 - MPMX19_05411 0.18 +0.3
92,490 - MPMX19_05411 0.18 +0.2
92,490 - MPMX19_05411 0.18 +2.7
92,490 - MPMX19_05411 0.18 +1.6
92,492 + MPMX19_05411 0.19 +0.8
92,492 + MPMX19_05411 0.19 -0.8
92,492 + MPMX19_05411 0.19 -1.2
92,492 + MPMX19_05411 0.19 +0.1
92,492 + MPMX19_05411 0.19 -1.2
92,493 - MPMX19_05411 0.19 +3.1
92,493 - MPMX19_05411 0.19 -0.2
92,493 - MPMX19_05411 0.19 +0.7
92,493 - MPMX19_05411 0.19 +0.8
92,493 - MPMX19_05411 0.19 +0.8
92,618 + MPMX19_05411 0.25 +1.2
92,618 + MPMX19_05411 0.25 -0.3
92,618 + MPMX19_05411 0.25 +0.8
92,618 + MPMX19_05411 0.25 +0.8
92,618 + MPMX19_05411 0.25 +1.1
92,619 - MPMX19_05411 0.25 +0.2
92,619 - MPMX19_05411 0.25 +0.3
92,619 - MPMX19_05411 0.25 +1.5
92,619 - MPMX19_05411 0.25 -0.3
92,619 - MPMX19_05411 0.25 +0.6
92,619 - MPMX19_05411 0.25 -1.8
92,783 + MPMX19_05411 0.34 +0.8
92,784 - MPMX19_05411 0.34 +1.6
92,784 - MPMX19_05411 0.34 +0.2
92,849 + MPMX19_05411 0.38 +0.5
93,032 + MPMX19_05411 0.48 -1.9
93,032 + MPMX19_05411 0.48 -0.1
93,032 + MPMX19_05411 0.48 -0.2
93,032 + MPMX19_05411 0.48 -0.8
93,032 + MPMX19_05411 0.48 +0.8
93,032 + MPMX19_05411 0.48 +0.3
93,032 + MPMX19_05411 0.48 -0.2
93,033 - MPMX19_05411 0.48 +0.8
93,033 - MPMX19_05411 0.48 +1.2
93,033 - MPMX19_05411 0.48 -0.2
93,033 - MPMX19_05411 0.48 +1.2
93,047 + MPMX19_05411 0.48 +0.2
93,048 - MPMX19_05411 0.48 +0.7
93,048 - MPMX19_05411 0.48 +2.1

Or see this region's nucleotide sequence