Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05317 and MPMX19_05318 are separated by 32 nucleotides MPMX19_05318 and MPMX19_05319 are separated by 86 nucleotides
MPMX19_05317: MPMX19_05317 - hypothetical protein, at 855,625 to 856,986
_05317
MPMX19_05318: MPMX19_05318 - hypothetical protein, at 857,019 to 858,206
_05318
MPMX19_05319: MPMX19_05319 - Cystathionine gamma-synthase, at 858,293 to 859,438
_05319
Position (kb) 857
858
859 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 856.111 kb on + strand, within MPMX19_05317 at 856.111 kb on + strand, within MPMX19_05317 at 856.111 kb on + strand, within MPMX19_05317 at 856.112 kb on - strand, within MPMX19_05317 at 856.112 kb on - strand, within MPMX19_05317 at 856.112 kb on - strand, within MPMX19_05317 at 856.112 kb on - strand, within MPMX19_05317 at 857.094 kb on + strand at 857.094 kb on + strand at 857.094 kb on + strand at 857.095 kb on - strand at 857.095 kb on - strand at 857.095 kb on - strand at 857.095 kb on - strand at 857.095 kb on - strand at 857.100 kb on + strand at 857.100 kb on + strand at 857.100 kb on + strand at 857.100 kb on + strand at 857.101 kb on - strand at 857.381 kb on + strand, within MPMX19_05318 at 857.381 kb on + strand, within MPMX19_05318 at 857.381 kb on + strand, within MPMX19_05318 at 857.382 kb on - strand, within MPMX19_05318 at 857.382 kb on - strand, within MPMX19_05318 at 857.382 kb on - strand, within MPMX19_05318 at 857.568 kb on + strand, within MPMX19_05318 at 857.569 kb on - strand, within MPMX19_05318 at 857.569 kb on - strand, within MPMX19_05318 at 857.569 kb on - strand, within MPMX19_05318 at 857.569 kb on - strand, within MPMX19_05318 at 857.569 kb on - strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.604 kb on + strand, within MPMX19_05318 at 857.605 kb on - strand, within MPMX19_05318 at 857.605 kb on - strand, within MPMX19_05318 at 857.605 kb on - strand, within MPMX19_05318 at 857.880 kb on + strand, within MPMX19_05318 at 857.880 kb on + strand, within MPMX19_05318 at 857.880 kb on + strand, within MPMX19_05318 at 857.881 kb on - strand, within MPMX19_05318 at 857.881 kb on - strand, within MPMX19_05318 at 857.881 kb on - strand, within MPMX19_05318 at 857.881 kb on - strand, within MPMX19_05318 at 857.908 kb on + strand, within MPMX19_05318 at 857.908 kb on + strand, within MPMX19_05318 at 857.908 kb on + strand, within MPMX19_05318 at 857.908 kb on + strand, within MPMX19_05318 at 858.198 kb on + strand at 858.198 kb on + strand at 858.198 kb on + strand at 858.199 kb on - strand at 858.199 kb on - strand at 858.247 kb on + strand at 858.247 kb on + strand at 858.247 kb on + strand at 858.247 kb on + strand at 858.247 kb on + strand at 858.247 kb on + strand at 858.248 kb on - strand at 858.248 kb on - strand at 858.248 kb on - strand at 858.248 kb on - strand at 858.248 kb on - strand at 858.248 kb on - strand at 858.248 kb on - strand at 858.248 kb on - strand at 858.257 kb on - strand at 858.257 kb on - strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.398 kb on + strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.399 kb on - strand at 858.422 kb on + strand, within MPMX19_05319 at 858.423 kb on - strand, within MPMX19_05319 at 858.423 kb on - strand, within MPMX19_05319 at 858.440 kb on + strand, within MPMX19_05319 at 858.440 kb on + strand, within MPMX19_05319 at 858.440 kb on + strand, within MPMX19_05319 at 858.440 kb on + strand, within MPMX19_05319 at 858.440 kb on + strand, within MPMX19_05319 at 858.440 kb on + strand, within MPMX19_05319 at 858.440 kb on + strand, within MPMX19_05319 at 858.440 kb on + strand, within MPMX19_05319 at 858.441 kb on - strand, within MPMX19_05319 at 858.441 kb on - strand, within MPMX19_05319 at 858.441 kb on - strand, within MPMX19_05319 at 858.441 kb on - strand, within MPMX19_05319 at 858.602 kb on + strand, within MPMX19_05319 at 858.602 kb on + strand, within MPMX19_05319 at 858.602 kb on + strand, within MPMX19_05319 at 858.602 kb on + strand, within MPMX19_05319 at 858.602 kb on + strand, within MPMX19_05319 at 858.602 kb on + strand, within MPMX19_05319 at 858.602 kb on + strand, within MPMX19_05319 at 858.602 kb on + strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.603 kb on - strand, within MPMX19_05319 at 858.670 kb on + strand, within MPMX19_05319 at 858.671 kb on - strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.899 kb on + strand, within MPMX19_05319 at 858.900 kb on - strand, within MPMX19_05319 at 858.900 kb on - strand, within MPMX19_05319 at 858.900 kb on - strand, within MPMX19_05319 at 858.900 kb on - strand, within MPMX19_05319 at 859.001 kb on - strand, within MPMX19_05319 at 859.136 kb on + strand, within MPMX19_05319 at 859.137 kb on - strand, within MPMX19_05319 at 859.196 kb on + strand, within MPMX19_05319
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 856,111 + MPMX19_05317 0.36 -0.2 856,111 + MPMX19_05317 0.36 -0.2 856,111 + MPMX19_05317 0.36 +1.7 856,112 - MPMX19_05317 0.36 +0.7 856,112 - MPMX19_05317 0.36 -0.8 856,112 - MPMX19_05317 0.36 -1.7 856,112 - MPMX19_05317 0.36 -0.5 857,094 + +0.4 857,094 + -0.9 857,094 + -0.2 857,095 - -0.0 857,095 - +0.7 857,095 - +0.1 857,095 - -0.7 857,095 - -2.0 857,100 + -0.2 857,100 + -0.7 857,100 + -0.5 857,100 + -0.5 857,101 - -0.2 857,381 + MPMX19_05318 0.30 +0.7 857,381 + MPMX19_05318 0.30 -0.5 857,381 + MPMX19_05318 0.30 +0.4 857,382 - MPMX19_05318 0.31 -1.3 857,382 - MPMX19_05318 0.31 -1.1 857,382 - MPMX19_05318 0.31 +0.4 857,568 + MPMX19_05318 0.46 +0.5 857,569 - MPMX19_05318 0.46 -0.6 857,569 - MPMX19_05318 0.46 -1.6 857,569 - MPMX19_05318 0.46 -0.7 857,569 - MPMX19_05318 0.46 +0.1 857,569 - MPMX19_05318 0.46 -0.4 857,604 + MPMX19_05318 0.49 +0.1 857,604 + MPMX19_05318 0.49 +1.1 857,604 + MPMX19_05318 0.49 +0.6 857,604 + MPMX19_05318 0.49 -1.0 857,604 + MPMX19_05318 0.49 -0.2 857,604 + MPMX19_05318 0.49 -0.1 857,604 + MPMX19_05318 0.49 +1.4 857,604 + MPMX19_05318 0.49 -1.2 857,604 + MPMX19_05318 0.49 +0.4 857,604 + MPMX19_05318 0.49 -0.0 857,604 + MPMX19_05318 0.49 +0.8 857,605 - MPMX19_05318 0.49 +2.1 857,605 - MPMX19_05318 0.49 -0.8 857,605 - MPMX19_05318 0.49 -0.5 857,880 + MPMX19_05318 0.72 +2.3 857,880 + MPMX19_05318 0.72 -0.9 857,880 + MPMX19_05318 0.72 -0.5 857,881 - MPMX19_05318 0.73 +1.1 857,881 - MPMX19_05318 0.73 +1.7 857,881 - MPMX19_05318 0.73 -0.5 857,881 - MPMX19_05318 0.73 +0.5 857,908 + MPMX19_05318 0.75 +0.1 857,908 + MPMX19_05318 0.75 -0.6 857,908 + MPMX19_05318 0.75 +1.1 857,908 + MPMX19_05318 0.75 +1.1 858,198 + +0.1 858,198 + +0.1 858,198 + -1.1 858,199 - +0.5 858,199 - +1.1 858,247 + -2.9 858,247 + -0.5 858,247 + -1.2 858,247 + -0.5 858,247 + -0.6 858,247 + +0.5 858,248 - +1.9 858,248 - -1.3 858,248 - -1.6 858,248 - -2.1 858,248 - -0.9 858,248 - -0.5 858,248 - +0.9 858,248 - -1.3 858,257 - -0.3 858,257 - -0.5 858,398 + -0.7 858,398 + -2.0 858,398 + +1.1 858,398 + -1.0 858,398 + +0.5 858,398 + -0.5 858,398 + +0.1 858,398 + -0.2 858,398 + -0.5 858,398 + +0.1 858,398 + -0.3 858,398 + +0.4 858,398 + +0.2 858,398 + +0.7 858,398 + +0.4 858,398 + +1.4 858,398 + -1.2 858,398 + +0.3 858,398 + +0.1 858,398 + +0.3 858,398 + -0.3 858,398 + -1.9 858,398 + -0.7 858,398 + -0.2 858,398 + -2.8 858,398 + -1.7 858,398 + -0.7 858,399 - +1.1 858,399 - -0.5 858,399 - +0.5 858,399 - +0.7 858,399 - -1.3 858,399 - -0.5 858,399 - +1.1 858,399 - +0.5 858,399 - -0.7 858,399 - -0.1 858,399 - -1.5 858,399 - -0.1 858,399 - +0.4 858,399 - -3.0 858,399 - -1.1 858,399 - +0.5 858,399 - +1.5 858,399 - -0.3 858,399 - -0.9 858,399 - +0.1 858,399 - +0.4 858,399 - -0.9 858,399 - -1.5 858,422 + MPMX19_05319 0.11 -0.8 858,423 - MPMX19_05319 0.11 +0.8 858,423 - MPMX19_05319 0.11 -0.5 858,440 + MPMX19_05319 0.13 -1.2 858,440 + MPMX19_05319 0.13 +0.4 858,440 + MPMX19_05319 0.13 -1.1 858,440 + MPMX19_05319 0.13 -1.9 858,440 + MPMX19_05319 0.13 -0.3 858,440 + MPMX19_05319 0.13 +0.9 858,440 + MPMX19_05319 0.13 +0.9 858,440 + MPMX19_05319 0.13 -0.9 858,441 - MPMX19_05319 0.13 +0.1 858,441 - MPMX19_05319 0.13 -0.0 858,441 - MPMX19_05319 0.13 -0.4 858,441 - MPMX19_05319 0.13 -0.9 858,602 + MPMX19_05319 0.27 +0.1 858,602 + MPMX19_05319 0.27 -0.2 858,602 + MPMX19_05319 0.27 -0.1 858,602 + MPMX19_05319 0.27 -0.9 858,602 + MPMX19_05319 0.27 -0.5 858,602 + MPMX19_05319 0.27 -0.3 858,602 + MPMX19_05319 0.27 -0.5 858,602 + MPMX19_05319 0.27 -1.5 858,603 - MPMX19_05319 0.27 -1.0 858,603 - MPMX19_05319 0.27 +0.7 858,603 - MPMX19_05319 0.27 -0.2 858,603 - MPMX19_05319 0.27 +0.0 858,603 - MPMX19_05319 0.27 +0.8 858,603 - MPMX19_05319 0.27 +0.4 858,603 - MPMX19_05319 0.27 +0.1 858,603 - MPMX19_05319 0.27 +0.4 858,603 - MPMX19_05319 0.27 -1.5 858,603 - MPMX19_05319 0.27 -0.5 858,603 - MPMX19_05319 0.27 -1.3 858,603 - MPMX19_05319 0.27 -1.0 858,603 - MPMX19_05319 0.27 +1.5 858,603 - MPMX19_05319 0.27 -0.5 858,603 - MPMX19_05319 0.27 -0.5 858,603 - MPMX19_05319 0.27 -1.2 858,670 + MPMX19_05319 0.33 -0.2 858,671 - MPMX19_05319 0.33 +0.1 858,899 + MPMX19_05319 0.53 -1.9 858,899 + MPMX19_05319 0.53 -0.1 858,899 + MPMX19_05319 0.53 -0.6 858,899 + MPMX19_05319 0.53 -0.3 858,899 + MPMX19_05319 0.53 +0.6 858,899 + MPMX19_05319 0.53 +1.0 858,899 + MPMX19_05319 0.53 -0.5 858,899 + MPMX19_05319 0.53 -2.5 858,900 - MPMX19_05319 0.53 +0.5 858,900 - MPMX19_05319 0.53 -0.9 858,900 - MPMX19_05319 0.53 +1.1 858,900 - MPMX19_05319 0.53 -0.3 859,001 - MPMX19_05319 0.62 -1.2 859,136 + MPMX19_05319 0.74 -0.4 859,137 - MPMX19_05319 0.74 -0.7 859,196 + MPMX19_05319 0.79 -1.5
Or see this region's nucleotide sequence