Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04828 and MPMX19_04829 are separated by 313 nucleotides MPMX19_04829 and MPMX19_04830 are separated by 45 nucleotides MPMX19_04830 and MPMX19_04831 are separated by 80 nucleotides MPMX19_04831 and MPMX19_04832 overlap by 1 nucleotides
MPMX19_04828: MPMX19_04828 - hypothetical protein, at 235,050 to 236,141
_04828
MPMX19_04829: MPMX19_04829 - Putative HTH-type transcriptional regulator, at 236,455 to 236,925
_04829
MPMX19_04830: MPMX19_04830 - FeS cluster assembly protein SufB, at 236,971 to 238,455
_04830
MPMX19_04831: MPMX19_04831 - putative ATP-dependent transporter SufC, at 238,536 to 239,288
_04831
MPMX19_04832: MPMX19_04832 - FeS cluster assembly protein SufD, at 239,288 to 240,655
_04832
Position (kb) 236
237
238
239 Strain fitness (log2 ratio) -2
-1
0
1
2 at 236.270 kb on - strand at 236.292 kb on + strand at 236.292 kb on + strand at 236.292 kb on + strand at 236.292 kb on + strand at 236.292 kb on + strand at 236.292 kb on + strand at 236.293 kb on - strand at 236.293 kb on - strand at 236.293 kb on - strand at 236.293 kb on - strand at 236.293 kb on - strand at 236.293 kb on - strand at 236.294 kb on + strand at 236.295 kb on - strand at 236.315 kb on + strand at 236.315 kb on + strand at 236.372 kb on - strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.482 kb on + strand at 236.532 kb on + strand, within MPMX19_04829 at 236.532 kb on + strand, within MPMX19_04829 at 236.693 kb on + strand, within MPMX19_04829
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 236,270 - +1.1 236,292 + -0.5 236,292 + +1.7 236,292 + +0.1 236,292 + +2.1 236,292 + +1.1 236,292 + +0.1 236,293 - +0.4 236,293 - -0.5 236,293 - +1.1 236,293 - -0.9 236,293 - -0.0 236,293 - +0.5 236,294 + -0.9 236,295 - +1.3 236,315 + -0.2 236,315 + -0.1 236,372 - -0.9 236,482 + +0.2 236,482 + +0.1 236,482 + -0.5 236,482 + +1.1 236,482 + +0.9 236,482 + +0.4 236,482 + +0.1 236,482 + +1.8 236,532 + MPMX19_04829 0.16 -0.5 236,532 + MPMX19_04829 0.16 -2.4 236,693 + MPMX19_04829 0.51 -0.9
Or see this region's nucleotide sequence