Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04824 and MPMX19_04825 are separated by 159 nucleotides MPMX19_04825 and MPMX19_04826 are separated by 207 nucleotides
MPMX19_04824: MPMX19_04824 - Malate synthase G, at 229,772 to 231,931
_04824
MPMX19_04825: MPMX19_04825 - hypothetical protein, at 232,091 to 233,347
_04825
MPMX19_04826: MPMX19_04826 - hypothetical protein, at 233,555 to 234,616
_04826
Position (kb) 232
233
234 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 231.364 kb on - strand, within MPMX19_04824 at 231.462 kb on + strand, within MPMX19_04824 at 231.462 kb on + strand, within MPMX19_04824 at 231.462 kb on + strand, within MPMX19_04824 at 231.462 kb on + strand, within MPMX19_04824 at 231.463 kb on - strand, within MPMX19_04824 at 231.463 kb on - strand, within MPMX19_04824 at 231.504 kb on + strand, within MPMX19_04824 at 231.504 kb on + strand, within MPMX19_04824 at 231.505 kb on - strand, within MPMX19_04824 at 231.505 kb on - strand, within MPMX19_04824 at 231.505 kb on - strand, within MPMX19_04824 at 231.505 kb on - strand, within MPMX19_04824 at 231.505 kb on - strand, within MPMX19_04824 at 231.516 kb on + strand, within MPMX19_04824 at 231.516 kb on + strand, within MPMX19_04824 at 231.516 kb on + strand, within MPMX19_04824 at 231.516 kb on + strand, within MPMX19_04824 at 231.516 kb on + strand, within MPMX19_04824 at 231.516 kb on + strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.517 kb on - strand, within MPMX19_04824 at 231.555 kb on + strand, within MPMX19_04824 at 231.555 kb on + strand, within MPMX19_04824 at 231.556 kb on - strand, within MPMX19_04824 at 231.600 kb on + strand, within MPMX19_04824 at 231.600 kb on + strand, within MPMX19_04824 at 231.600 kb on + strand, within MPMX19_04824 at 231.600 kb on + strand, within MPMX19_04824 at 231.601 kb on - strand, within MPMX19_04824 at 231.601 kb on - strand, within MPMX19_04824 at 231.601 kb on - strand, within MPMX19_04824 at 231.663 kb on + strand, within MPMX19_04824 at 231.663 kb on + strand, within MPMX19_04824 at 231.663 kb on + strand, within MPMX19_04824 at 231.663 kb on + strand, within MPMX19_04824 at 231.664 kb on - strand, within MPMX19_04824 at 231.664 kb on - strand, within MPMX19_04824 at 231.664 kb on - strand, within MPMX19_04824 at 231.664 kb on - strand, within MPMX19_04824 at 231.690 kb on + strand, within MPMX19_04824 at 231.690 kb on + strand, within MPMX19_04824 at 231.690 kb on + strand, within MPMX19_04824 at 231.690 kb on + strand, within MPMX19_04824 at 231.773 kb on + strand at 231.773 kb on + strand at 231.773 kb on + strand at 231.774 kb on - strand at 231.774 kb on - strand at 231.882 kb on + strand at 231.882 kb on + strand at 231.882 kb on + strand at 231.882 kb on + strand at 231.883 kb on - strand at 231.883 kb on - strand at 232.047 kb on + strand at 232.047 kb on + strand at 232.048 kb on - strand at 232.048 kb on - strand at 232.060 kb on + strand at 232.061 kb on - strand at 232.061 kb on - strand at 232.968 kb on + strand, within MPMX19_04825 at 232.968 kb on + strand, within MPMX19_04825 at 232.968 kb on + strand, within MPMX19_04825 at 232.969 kb on - strand, within MPMX19_04825 at 232.969 kb on - strand, within MPMX19_04825 at 232.969 kb on - strand, within MPMX19_04825 at 232.969 kb on - strand, within MPMX19_04825 at 232.969 kb on - strand, within MPMX19_04825 at 233.395 kb on + strand at 233.395 kb on + strand at 233.395 kb on + strand at 233.503 kb on - strand at 233.527 kb on - strand at 233.888 kb on + strand, within MPMX19_04826 at 233.888 kb on + strand, within MPMX19_04826 at 233.889 kb on - strand, within MPMX19_04826 at 233.889 kb on - strand, within MPMX19_04826 at 234.146 kb on + strand, within MPMX19_04826 at 234.146 kb on + strand, within MPMX19_04826 at 234.146 kb on + strand, within MPMX19_04826 at 234.146 kb on + strand, within MPMX19_04826 at 234.147 kb on - strand, within MPMX19_04826 at 234.147 kb on - strand, within MPMX19_04826 at 234.147 kb on - strand, within MPMX19_04826 at 234.147 kb on - strand, within MPMX19_04826 at 234.147 kb on - strand, within MPMX19_04826 at 234.147 kb on - strand, within MPMX19_04826 at 234.164 kb on - strand, within MPMX19_04826
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 231,364 - MPMX19_04824 0.74 -0.3 231,462 + MPMX19_04824 0.78 -1.5 231,462 + MPMX19_04824 0.78 -1.7 231,462 + MPMX19_04824 0.78 +1.1 231,462 + MPMX19_04824 0.78 -0.3 231,463 - MPMX19_04824 0.78 -1.0 231,463 - MPMX19_04824 0.78 -0.1 231,504 + MPMX19_04824 0.80 -0.4 231,504 + MPMX19_04824 0.80 -0.2 231,505 - MPMX19_04824 0.80 +0.5 231,505 - MPMX19_04824 0.80 +0.4 231,505 - MPMX19_04824 0.80 -1.2 231,505 - MPMX19_04824 0.80 -0.1 231,505 - MPMX19_04824 0.80 -1.5 231,516 + MPMX19_04824 0.81 +0.1 231,516 + MPMX19_04824 0.81 -1.1 231,516 + MPMX19_04824 0.81 +0.3 231,516 + MPMX19_04824 0.81 +0.1 231,516 + MPMX19_04824 0.81 +0.1 231,516 + MPMX19_04824 0.81 -0.3 231,517 - MPMX19_04824 0.81 -1.1 231,517 - MPMX19_04824 0.81 +2.1 231,517 - MPMX19_04824 0.81 +2.1 231,517 - MPMX19_04824 0.81 +0.5 231,517 - MPMX19_04824 0.81 +0.7 231,517 - MPMX19_04824 0.81 -0.5 231,517 - MPMX19_04824 0.81 +0.0 231,517 - MPMX19_04824 0.81 +2.3 231,517 - MPMX19_04824 0.81 -1.0 231,517 - MPMX19_04824 0.81 -0.5 231,517 - MPMX19_04824 0.81 -0.2 231,555 + MPMX19_04824 0.83 -0.3 231,555 + MPMX19_04824 0.83 -0.9 231,556 - MPMX19_04824 0.83 -0.0 231,600 + MPMX19_04824 0.85 -0.8 231,600 + MPMX19_04824 0.85 +0.5 231,600 + MPMX19_04824 0.85 -0.7 231,600 + MPMX19_04824 0.85 -0.2 231,601 - MPMX19_04824 0.85 -1.2 231,601 - MPMX19_04824 0.85 +1.3 231,601 - MPMX19_04824 0.85 -1.5 231,663 + MPMX19_04824 0.88 -0.2 231,663 + MPMX19_04824 0.88 -2.3 231,663 + MPMX19_04824 0.88 +0.6 231,663 + MPMX19_04824 0.88 -0.9 231,664 - MPMX19_04824 0.88 +1.1 231,664 - MPMX19_04824 0.88 +0.1 231,664 - MPMX19_04824 0.88 -0.5 231,664 - MPMX19_04824 0.88 -0.9 231,690 + MPMX19_04824 0.89 -1.5 231,690 + MPMX19_04824 0.89 -0.2 231,690 + MPMX19_04824 0.89 -0.8 231,690 + MPMX19_04824 0.89 -0.5 231,773 + -1.3 231,773 + +0.6 231,773 + -0.9 231,774 - +0.8 231,774 - -2.2 231,882 + -0.3 231,882 + -1.5 231,882 + +0.7 231,882 + -0.3 231,883 - -0.2 231,883 - -0.4 232,047 + -0.2 232,047 + +1.7 232,048 - +0.1 232,048 - +0.0 232,060 + +0.1 232,061 - -0.9 232,061 - -0.5 232,968 + MPMX19_04825 0.70 -1.2 232,968 + MPMX19_04825 0.70 -0.9 232,968 + MPMX19_04825 0.70 +1.1 232,969 - MPMX19_04825 0.70 -1.3 232,969 - MPMX19_04825 0.70 -1.2 232,969 - MPMX19_04825 0.70 +3.4 232,969 - MPMX19_04825 0.70 -1.7 232,969 - MPMX19_04825 0.70 -0.9 233,395 + -1.2 233,395 + +1.3 233,395 + -0.2 233,503 - -0.3 233,527 - -1.4 233,888 + MPMX19_04826 0.31 +1.1 233,888 + MPMX19_04826 0.31 -0.5 233,889 - MPMX19_04826 0.31 +0.1 233,889 - MPMX19_04826 0.31 -0.8 234,146 + MPMX19_04826 0.56 +1.6 234,146 + MPMX19_04826 0.56 +0.1 234,146 + MPMX19_04826 0.56 -1.6 234,146 + MPMX19_04826 0.56 +1.7 234,147 - MPMX19_04826 0.56 +0.1 234,147 - MPMX19_04826 0.56 +1.1 234,147 - MPMX19_04826 0.56 -0.9 234,147 - MPMX19_04826 0.56 +1.1 234,147 - MPMX19_04826 0.56 -0.5 234,147 - MPMX19_04826 0.56 +0.5 234,164 - MPMX19_04826 0.57 -0.3
Or see this region's nucleotide sequence