Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04774 and MPMX19_04775 are separated by 153 nucleotides MPMX19_04775 and MPMX19_04776 overlap by 4 nucleotides
MPMX19_04774: MPMX19_04774 - hypothetical protein, at 165,967 to 167,016
_04774
MPMX19_04775: MPMX19_04775 - hypothetical protein, at 167,170 to 169,359
_04775
MPMX19_04776: MPMX19_04776 - Spermidine/putrescine import ATP-binding protein PotA, at 169,356 to 170,435
_04776
Position (kb) 167
168
169
170 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 166.285 kb on + strand, within MPMX19_04774 at 166.286 kb on - strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.333 kb on + strand, within MPMX19_04774 at 166.334 kb on - strand, within MPMX19_04774 at 166.334 kb on - strand, within MPMX19_04774 at 166.334 kb on - strand, within MPMX19_04774 at 166.334 kb on - strand, within MPMX19_04774 at 166.334 kb on - strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.366 kb on + strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.367 kb on - strand, within MPMX19_04774 at 166.390 kb on + strand, within MPMX19_04774 at 166.390 kb on + strand, within MPMX19_04774 at 166.390 kb on + strand, within MPMX19_04774 at 166.510 kb on + strand, within MPMX19_04774 at 166.510 kb on + strand, within MPMX19_04774 at 166.511 kb on - strand, within MPMX19_04774 at 166.564 kb on + strand, within MPMX19_04774 at 166.564 kb on + strand, within MPMX19_04774 at 166.565 kb on - strand, within MPMX19_04774 at 166.597 kb on + strand, within MPMX19_04774 at 166.598 kb on - strand, within MPMX19_04774 at 166.598 kb on - strand, within MPMX19_04774 at 166.598 kb on - strand, within MPMX19_04774 at 166.598 kb on - strand, within MPMX19_04774 at 166.739 kb on - strand, within MPMX19_04774 at 166.801 kb on + strand, within MPMX19_04774 at 166.801 kb on + strand, within MPMX19_04774 at 166.801 kb on + strand, within MPMX19_04774 at 166.801 kb on + strand, within MPMX19_04774 at 166.801 kb on + strand, within MPMX19_04774 at 166.802 kb on - strand, within MPMX19_04774 at 166.802 kb on - strand, within MPMX19_04774 at 166.802 kb on - strand, within MPMX19_04774 at 166.802 kb on - strand, within MPMX19_04774 at 166.930 kb on + strand at 166.930 kb on + strand at 166.931 kb on - strand at 166.931 kb on - strand at 167.014 kb on + strand at 167.014 kb on + strand at 167.014 kb on + strand at 167.014 kb on + strand at 167.015 kb on - strand at 167.015 kb on - strand at 167.015 kb on - strand at 167.028 kb on + strand at 167.029 kb on - strand at 167.050 kb on - strand at 167.050 kb on - strand at 167.050 kb on - strand at 167.692 kb on + strand, within MPMX19_04775 at 167.692 kb on + strand, within MPMX19_04775 at 167.692 kb on + strand, within MPMX19_04775 at 167.692 kb on + strand, within MPMX19_04775 at 167.693 kb on - strand, within MPMX19_04775 at 167.693 kb on - strand, within MPMX19_04775 at 167.693 kb on - strand, within MPMX19_04775 at 167.693 kb on - strand, within MPMX19_04775 at 167.693 kb on - strand, within MPMX19_04775 at 168.064 kb on + strand, within MPMX19_04775 at 168.065 kb on - strand, within MPMX19_04775 at 168.065 kb on - strand, within MPMX19_04775 at 168.065 kb on - strand, within MPMX19_04775 at 168.340 kb on + strand, within MPMX19_04775 at 168.340 kb on + strand, within MPMX19_04775 at 168.340 kb on + strand, within MPMX19_04775 at 168.340 kb on + strand, within MPMX19_04775 at 168.340 kb on + strand, within MPMX19_04775 at 168.341 kb on - strand, within MPMX19_04775 at 168.341 kb on - strand, within MPMX19_04775 at 168.341 kb on - strand, within MPMX19_04775 at 168.341 kb on - strand, within MPMX19_04775 at 168.341 kb on - strand, within MPMX19_04775 at 168.341 kb on - strand, within MPMX19_04775 at 168.341 kb on - strand, within MPMX19_04775 at 168.461 kb on - strand, within MPMX19_04775 at 168.461 kb on - strand, within MPMX19_04775 at 168.532 kb on + strand, within MPMX19_04775 at 168.532 kb on + strand, within MPMX19_04775 at 168.532 kb on + strand, within MPMX19_04775 at 168.533 kb on - strand, within MPMX19_04775 at 168.533 kb on - strand, within MPMX19_04775 at 168.533 kb on - strand, within MPMX19_04775 at 168.574 kb on + strand, within MPMX19_04775 at 168.574 kb on + strand, within MPMX19_04775 at 168.574 kb on + strand, within MPMX19_04775 at 168.575 kb on - strand, within MPMX19_04775 at 168.575 kb on - strand, within MPMX19_04775 at 168.575 kb on - strand, within MPMX19_04775 at 168.575 kb on - strand, within MPMX19_04775 at 168.575 kb on - strand, within MPMX19_04775 at 168.575 kb on - strand, within MPMX19_04775 at 168.643 kb on + strand, within MPMX19_04775 at 168.643 kb on + strand, within MPMX19_04775 at 168.643 kb on + strand, within MPMX19_04775 at 168.643 kb on + strand, within MPMX19_04775 at 168.643 kb on + strand, within MPMX19_04775 at 168.644 kb on - strand, within MPMX19_04775 at 168.644 kb on - strand, within MPMX19_04775 at 168.644 kb on - strand, within MPMX19_04775 at 168.644 kb on - strand, within MPMX19_04775 at 168.644 kb on - strand, within MPMX19_04775 at 168.644 kb on - strand, within MPMX19_04775 at 168.644 kb on - strand, within MPMX19_04775 at 168.781 kb on + strand, within MPMX19_04775 at 168.781 kb on + strand, within MPMX19_04775 at 168.782 kb on - strand, within MPMX19_04775 at 168.782 kb on - strand, within MPMX19_04775 at 168.877 kb on + strand, within MPMX19_04775 at 168.877 kb on + strand, within MPMX19_04775 at 168.877 kb on + strand, within MPMX19_04775 at 168.877 kb on + strand, within MPMX19_04775 at 168.877 kb on + strand, within MPMX19_04775 at 168.877 kb on + strand, within MPMX19_04775 at 168.877 kb on + strand, within MPMX19_04775 at 168.877 kb on + strand, within MPMX19_04775 at 168.877 kb on + strand, within MPMX19_04775 at 168.877 kb on + strand, within MPMX19_04775 at 168.877 kb on + strand, within MPMX19_04775 at 169.111 kb on + strand, within MPMX19_04775 at 169.111 kb on + strand, within MPMX19_04775 at 169.111 kb on + strand, within MPMX19_04775 at 169.111 kb on + strand, within MPMX19_04775 at 169.111 kb on + strand, within MPMX19_04775 at 169.111 kb on + strand, within MPMX19_04775 at 169.112 kb on - strand, within MPMX19_04775 at 169.112 kb on - strand, within MPMX19_04775 at 169.171 kb on + strand at 169.171 kb on + strand at 169.171 kb on + strand at 169.172 kb on - strand at 169.189 kb on + strand at 169.189 kb on + strand at 169.189 kb on + strand at 169.189 kb on + strand at 169.189 kb on + strand at 169.189 kb on + strand at 169.190 kb on - strand at 169.190 kb on - strand at 169.238 kb on - strand at 169.238 kb on - strand at 169.238 kb on - strand at 169.238 kb on - strand at 169.356 kb on - strand at 169.623 kb on + strand, within MPMX19_04776 at 169.623 kb on + strand, within MPMX19_04776 at 169.623 kb on + strand, within MPMX19_04776 at 169.623 kb on + strand, within MPMX19_04776 at 169.623 kb on + strand, within MPMX19_04776 at 169.624 kb on - strand, within MPMX19_04776 at 169.624 kb on - strand, within MPMX19_04776 at 169.938 kb on + strand, within MPMX19_04776 at 169.938 kb on + strand, within MPMX19_04776 at 169.938 kb on + strand, within MPMX19_04776 at 169.938 kb on + strand, within MPMX19_04776 at 169.938 kb on + strand, within MPMX19_04776 at 169.938 kb on + strand, within MPMX19_04776 at 169.938 kb on + strand, within MPMX19_04776 at 169.938 kb on + strand, within MPMX19_04776 at 169.938 kb on + strand, within MPMX19_04776 at 169.938 kb on + strand, within MPMX19_04776 at 169.938 kb on + strand, within MPMX19_04776 at 169.938 kb on + strand, within MPMX19_04776 at 169.938 kb on + strand, within MPMX19_04776 at 169.938 kb on + strand, within MPMX19_04776 at 169.939 kb on - strand, within MPMX19_04776 at 169.939 kb on - strand, within MPMX19_04776 at 169.939 kb on - strand, within MPMX19_04776 at 169.939 kb on - strand, within MPMX19_04776 at 169.939 kb on - strand, within MPMX19_04776 at 169.939 kb on - strand, within MPMX19_04776 at 169.939 kb on - strand, within MPMX19_04776 at 170.037 kb on + strand, within MPMX19_04776 at 170.037 kb on + strand, within MPMX19_04776 at 170.037 kb on + strand, within MPMX19_04776 at 170.037 kb on + strand, within MPMX19_04776 at 170.038 kb on - strand, within MPMX19_04776 at 170.289 kb on + strand, within MPMX19_04776 at 170.289 kb on + strand, within MPMX19_04776 at 170.289 kb on + strand, within MPMX19_04776 at 170.290 kb on - strand, within MPMX19_04776 at 170.290 kb on - strand, within MPMX19_04776 at 170.290 kb on - strand, within MPMX19_04776 at 170.290 kb on - strand, within MPMX19_04776 at 170.290 kb on - strand, within MPMX19_04776 at 170.290 kb on - strand, within MPMX19_04776 at 170.290 kb on - strand, within MPMX19_04776 at 170.310 kb on + strand, within MPMX19_04776 at 170.310 kb on + strand, within MPMX19_04776 at 170.310 kb on + strand, within MPMX19_04776 at 170.310 kb on + strand, within MPMX19_04776 at 170.310 kb on + strand, within MPMX19_04776 at 170.310 kb on + strand, within MPMX19_04776 at 170.310 kb on + strand, within MPMX19_04776 at 170.311 kb on - strand, within MPMX19_04776 at 170.311 kb on - strand, within MPMX19_04776 at 170.311 kb on - strand, within MPMX19_04776 at 170.311 kb on - strand, within MPMX19_04776 at 170.311 kb on - strand, within MPMX19_04776 at 170.311 kb on - strand, within MPMX19_04776
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 166,285 + MPMX19_04774 0.30 -0.5 166,286 - MPMX19_04774 0.30 -0.9 166,333 + MPMX19_04774 0.35 +1.1 166,333 + MPMX19_04774 0.35 -0.9 166,333 + MPMX19_04774 0.35 -0.3 166,333 + MPMX19_04774 0.35 +0.5 166,333 + MPMX19_04774 0.35 -0.4 166,333 + MPMX19_04774 0.35 +2.4 166,333 + MPMX19_04774 0.35 +0.5 166,333 + MPMX19_04774 0.35 -0.5 166,334 - MPMX19_04774 0.35 +1.1 166,334 - MPMX19_04774 0.35 -0.2 166,334 - MPMX19_04774 0.35 -0.6 166,334 - MPMX19_04774 0.35 -0.3 166,334 - MPMX19_04774 0.35 -1.3 166,366 + MPMX19_04774 0.38 -0.9 166,366 + MPMX19_04774 0.38 -0.9 166,366 + MPMX19_04774 0.38 +0.1 166,366 + MPMX19_04774 0.38 -0.5 166,366 + MPMX19_04774 0.38 -1.5 166,366 + MPMX19_04774 0.38 -0.2 166,366 + MPMX19_04774 0.38 +0.1 166,366 + MPMX19_04774 0.38 -1.2 166,366 + MPMX19_04774 0.38 -2.3 166,366 + MPMX19_04774 0.38 -1.4 166,366 + MPMX19_04774 0.38 -0.5 166,367 - MPMX19_04774 0.38 -0.2 166,367 - MPMX19_04774 0.38 -0.5 166,367 - MPMX19_04774 0.38 -1.2 166,367 - MPMX19_04774 0.38 +0.3 166,367 - MPMX19_04774 0.38 -0.4 166,367 - MPMX19_04774 0.38 +0.5 166,367 - MPMX19_04774 0.38 -0.9 166,367 - MPMX19_04774 0.38 -0.7 166,367 - MPMX19_04774 0.38 -2.2 166,367 - MPMX19_04774 0.38 +0.7 166,367 - MPMX19_04774 0.38 -1.2 166,367 - MPMX19_04774 0.38 -2.5 166,367 - MPMX19_04774 0.38 +0.1 166,390 + MPMX19_04774 0.40 -1.4 166,390 + MPMX19_04774 0.40 -1.7 166,390 + MPMX19_04774 0.40 -0.7 166,510 + MPMX19_04774 0.52 -0.2 166,510 + MPMX19_04774 0.52 -0.9 166,511 - MPMX19_04774 0.52 -0.3 166,564 + MPMX19_04774 0.57 -1.3 166,564 + MPMX19_04774 0.57 -0.9 166,565 - MPMX19_04774 0.57 -1.1 166,597 + MPMX19_04774 0.60 -0.8 166,598 - MPMX19_04774 0.60 +0.3 166,598 - MPMX19_04774 0.60 -1.9 166,598 - MPMX19_04774 0.60 +0.2 166,598 - MPMX19_04774 0.60 -1.2 166,739 - MPMX19_04774 0.74 +1.1 166,801 + MPMX19_04774 0.79 +0.1 166,801 + MPMX19_04774 0.79 +1.9 166,801 + MPMX19_04774 0.79 -0.2 166,801 + MPMX19_04774 0.79 +1.3 166,801 + MPMX19_04774 0.79 -0.2 166,802 - MPMX19_04774 0.80 -0.3 166,802 - MPMX19_04774 0.80 +0.5 166,802 - MPMX19_04774 0.80 -0.5 166,802 - MPMX19_04774 0.80 -1.2 166,930 + -1.2 166,930 + +0.3 166,931 - -1.3 166,931 - +0.0 167,014 + -1.0 167,014 + +0.2 167,014 + -2.2 167,014 + +0.8 167,015 - +0.1 167,015 - -1.6 167,015 - -0.8 167,028 + +0.6 167,029 - -0.5 167,050 - -0.0 167,050 - +0.2 167,050 - -2.0 167,692 + MPMX19_04775 0.24 +0.4 167,692 + MPMX19_04775 0.24 +0.9 167,692 + MPMX19_04775 0.24 -1.5 167,692 + MPMX19_04775 0.24 -1.0 167,693 - MPMX19_04775 0.24 -0.6 167,693 - MPMX19_04775 0.24 +1.4 167,693 - MPMX19_04775 0.24 +0.9 167,693 - MPMX19_04775 0.24 -1.2 167,693 - MPMX19_04775 0.24 -0.4 168,064 + MPMX19_04775 0.41 -0.9 168,065 - MPMX19_04775 0.41 -1.9 168,065 - MPMX19_04775 0.41 +0.7 168,065 - MPMX19_04775 0.41 -1.7 168,340 + MPMX19_04775 0.53 +0.1 168,340 + MPMX19_04775 0.53 -0.7 168,340 + MPMX19_04775 0.53 +0.8 168,340 + MPMX19_04775 0.53 -0.2 168,340 + MPMX19_04775 0.53 +0.1 168,341 - MPMX19_04775 0.53 +1.1 168,341 - MPMX19_04775 0.53 +0.3 168,341 - MPMX19_04775 0.53 +0.4 168,341 - MPMX19_04775 0.53 -1.9 168,341 - MPMX19_04775 0.53 -1.2 168,341 - MPMX19_04775 0.53 +0.5 168,341 - MPMX19_04775 0.53 +0.8 168,461 - MPMX19_04775 0.59 +0.2 168,461 - MPMX19_04775 0.59 +0.1 168,532 + MPMX19_04775 0.62 +0.5 168,532 + MPMX19_04775 0.62 -2.2 168,532 + MPMX19_04775 0.62 +0.6 168,533 - MPMX19_04775 0.62 -0.5 168,533 - MPMX19_04775 0.62 -0.6 168,533 - MPMX19_04775 0.62 +1.1 168,574 + MPMX19_04775 0.64 -1.2 168,574 + MPMX19_04775 0.64 +0.8 168,574 + MPMX19_04775 0.64 -0.2 168,575 - MPMX19_04775 0.64 +1.1 168,575 - MPMX19_04775 0.64 -0.5 168,575 - MPMX19_04775 0.64 -0.2 168,575 - MPMX19_04775 0.64 +0.1 168,575 - MPMX19_04775 0.64 -1.0 168,575 - MPMX19_04775 0.64 +3.1 168,643 + MPMX19_04775 0.67 -0.5 168,643 + MPMX19_04775 0.67 +0.0 168,643 + MPMX19_04775 0.67 -1.2 168,643 + MPMX19_04775 0.67 +1.9 168,643 + MPMX19_04775 0.67 +0.6 168,644 - MPMX19_04775 0.67 +0.2 168,644 - MPMX19_04775 0.67 -0.1 168,644 - MPMX19_04775 0.67 -0.2 168,644 - MPMX19_04775 0.67 +1.1 168,644 - MPMX19_04775 0.67 -0.9 168,644 - MPMX19_04775 0.67 -0.3 168,644 - MPMX19_04775 0.67 +0.2 168,781 + MPMX19_04775 0.74 -1.9 168,781 + MPMX19_04775 0.74 -0.9 168,782 - MPMX19_04775 0.74 -0.9 168,782 - MPMX19_04775 0.74 +0.9 168,877 + MPMX19_04775 0.78 -0.5 168,877 + MPMX19_04775 0.78 -0.3 168,877 + MPMX19_04775 0.78 +1.1 168,877 + MPMX19_04775 0.78 +2.5 168,877 + MPMX19_04775 0.78 -0.2 168,877 + MPMX19_04775 0.78 -0.5 168,877 + MPMX19_04775 0.78 +0.1 168,877 + MPMX19_04775 0.78 -2.3 168,877 + MPMX19_04775 0.78 +0.8 168,877 + MPMX19_04775 0.78 -0.3 168,877 + MPMX19_04775 0.78 +0.1 169,111 + MPMX19_04775 0.89 +0.4 169,111 + MPMX19_04775 0.89 -1.2 169,111 + MPMX19_04775 0.89 -1.3 169,111 + MPMX19_04775 0.89 +0.9 169,111 + MPMX19_04775 0.89 -0.3 169,111 + MPMX19_04775 0.89 +0.1 169,112 - MPMX19_04775 0.89 -0.5 169,112 - MPMX19_04775 0.89 -1.2 169,171 + +0.5 169,171 + -0.2 169,171 + -0.9 169,172 - -1.2 169,189 + +0.9 169,189 + +0.1 169,189 + +0.1 169,189 + +0.5 169,189 + -1.1 169,189 + -0.3 169,190 - +0.1 169,190 - -0.4 169,238 - +0.4 169,238 - -0.9 169,238 - +1.1 169,238 - -0.5 169,356 - -0.5 169,623 + MPMX19_04776 0.25 -0.2 169,623 + MPMX19_04776 0.25 +0.7 169,623 + MPMX19_04776 0.25 -0.5 169,623 + MPMX19_04776 0.25 +0.8 169,623 + MPMX19_04776 0.25 +0.4 169,624 - MPMX19_04776 0.25 +1.1 169,624 - MPMX19_04776 0.25 -1.2 169,938 + MPMX19_04776 0.54 +0.4 169,938 + MPMX19_04776 0.54 +0.1 169,938 + MPMX19_04776 0.54 +1.7 169,938 + MPMX19_04776 0.54 -0.1 169,938 + MPMX19_04776 0.54 -1.9 169,938 + MPMX19_04776 0.54 +0.4 169,938 + MPMX19_04776 0.54 +1.1 169,938 + MPMX19_04776 0.54 +0.0 169,938 + MPMX19_04776 0.54 -0.3 169,938 + MPMX19_04776 0.54 +0.2 169,938 + MPMX19_04776 0.54 -1.5 169,938 + MPMX19_04776 0.54 +0.8 169,938 + MPMX19_04776 0.54 -0.5 169,938 + MPMX19_04776 0.54 -0.9 169,939 - MPMX19_04776 0.54 -0.8 169,939 - MPMX19_04776 0.54 -0.5 169,939 - MPMX19_04776 0.54 -0.0 169,939 - MPMX19_04776 0.54 +0.1 169,939 - MPMX19_04776 0.54 +0.1 169,939 - MPMX19_04776 0.54 +1.5 169,939 - MPMX19_04776 0.54 +0.1 170,037 + MPMX19_04776 0.63 +0.5 170,037 + MPMX19_04776 0.63 -0.5 170,037 + MPMX19_04776 0.63 -1.1 170,037 + MPMX19_04776 0.63 -0.3 170,038 - MPMX19_04776 0.63 +0.1 170,289 + MPMX19_04776 0.86 +0.1 170,289 + MPMX19_04776 0.86 +0.7 170,289 + MPMX19_04776 0.86 +0.1 170,290 - MPMX19_04776 0.86 +0.6 170,290 - MPMX19_04776 0.86 -0.5 170,290 - MPMX19_04776 0.86 -1.2 170,290 - MPMX19_04776 0.86 +2.1 170,290 - MPMX19_04776 0.86 +0.4 170,290 - MPMX19_04776 0.86 -0.5 170,290 - MPMX19_04776 0.86 +0.7 170,310 + MPMX19_04776 0.88 -0.3 170,310 + MPMX19_04776 0.88 -0.9 170,310 + MPMX19_04776 0.88 +0.1 170,310 + MPMX19_04776 0.88 +0.1 170,310 + MPMX19_04776 0.88 +0.1 170,310 + MPMX19_04776 0.88 -0.5 170,310 + MPMX19_04776 0.88 +0.3 170,311 - MPMX19_04776 0.88 -0.9 170,311 - MPMX19_04776 0.88 -1.2 170,311 - MPMX19_04776 0.88 +0.0 170,311 - MPMX19_04776 0.88 -0.0 170,311 - MPMX19_04776 0.88 -0.7 170,311 - MPMX19_04776 0.88 -0.2
Or see this region's nucleotide sequence