Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04702

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04700 and MPMX19_04701 overlap by 4 nucleotidesMPMX19_04701 and MPMX19_04702 are separated by 10 nucleotidesMPMX19_04702 and MPMX19_04703 are separated by 66 nucleotides MPMX19_04700: MPMX19_04700 - Adaptive-response sensory-kinase SasA, at 85,851 to 87,530 _04700 MPMX19_04701: MPMX19_04701 - Transcriptional regulatory protein FixJ, at 87,527 to 88,171 _04701 MPMX19_04702: MPMX19_04702 - hypothetical protein, at 88,182 to 88,931 _04702 MPMX19_04703: MPMX19_04703 - L-serine dehydratase TdcG, at 88,998 to 90,380 _04703 Position (kb) 88 89Strain fitness (log2 ratio) -2 -1 0 1 2at 87.645 kb on + strand, within MPMX19_04701at 87.646 kb on - strand, within MPMX19_04701at 88.397 kb on + strand, within MPMX19_04702at 88.398 kb on - strand, within MPMX19_04702at 88.398 kb on - strand, within MPMX19_04702at 88.766 kb on + strand, within MPMX19_04702at 88.766 kb on + strand, within MPMX19_04702at 88.766 kb on + strand, within MPMX19_04702at 88.767 kb on - strand, within MPMX19_04702at 88.767 kb on - strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.778 kb on + strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.779 kb on - strand, within MPMX19_04702at 88.780 kb on + strand, within MPMX19_04702at 88.780 kb on + strand, within MPMX19_04702at 88.780 kb on + strand, within MPMX19_04702at 88.780 kb on + strand, within MPMX19_04702at 88.780 kb on + strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.781 kb on - strand, within MPMX19_04702at 88.911 kb on + strandat 88.912 kb on - strandat 89.464 kb on + strand, within MPMX19_04703at 89.464 kb on + strand, within MPMX19_04703at 89.464 kb on + strand, within MPMX19_04703at 89.464 kb on + strand, within MPMX19_04703at 89.465 kb on - strand, within MPMX19_04703at 89.465 kb on - strand, within MPMX19_04703at 89.465 kb on - strand, within MPMX19_04703at 89.467 kb on + strand, within MPMX19_04703at 89.467 kb on + strand, within MPMX19_04703at 89.468 kb on - strand, within MPMX19_04703at 89.468 kb on - strand, within MPMX19_04703at 89.468 kb on - strand, within MPMX19_04703at 89.468 kb on - strand, within MPMX19_04703at 89.468 kb on - strand, within MPMX19_04703at 89.563 kb on + strand, within MPMX19_04703at 89.563 kb on + strand, within MPMX19_04703at 89.563 kb on + strand, within MPMX19_04703at 89.563 kb on + strand, within MPMX19_04703at 89.564 kb on - strand, within MPMX19_04703at 89.564 kb on - strand, within MPMX19_04703at 89.693 kb on + strand, within MPMX19_04703at 89.693 kb on + strand, within MPMX19_04703at 89.694 kb on - strand, within MPMX19_04703at 89.861 kb on - strand, within MPMX19_04703

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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87,645 + MPMX19_04701 0.18 -0.5
87,646 - MPMX19_04701 0.18 -0.8
88,397 + MPMX19_04702 0.29 -0.2
88,398 - MPMX19_04702 0.29 -1.9
88,398 - MPMX19_04702 0.29 -0.3
88,766 + MPMX19_04702 0.78 +2.1
88,766 + MPMX19_04702 0.78 +0.3
88,766 + MPMX19_04702 0.78 -0.9
88,767 - MPMX19_04702 0.78 -2.2
88,767 - MPMX19_04702 0.78 -0.9
88,778 + MPMX19_04702 0.79 -0.5
88,778 + MPMX19_04702 0.79 +1.7
88,778 + MPMX19_04702 0.79 -2.3
88,778 + MPMX19_04702 0.79 +0.7
88,778 + MPMX19_04702 0.79 -0.9
88,778 + MPMX19_04702 0.79 -0.2
88,778 + MPMX19_04702 0.79 -1.2
88,778 + MPMX19_04702 0.79 -1.7
88,778 + MPMX19_04702 0.79 -1.9
88,778 + MPMX19_04702 0.79 -0.4
88,778 + MPMX19_04702 0.79 -1.5
88,778 + MPMX19_04702 0.79 -0.2
88,778 + MPMX19_04702 0.79 -1.5
88,778 + MPMX19_04702 0.79 +0.4
88,778 + MPMX19_04702 0.79 -0.3
88,779 - MPMX19_04702 0.80 -1.3
88,779 - MPMX19_04702 0.80 +0.1
88,779 - MPMX19_04702 0.80 -0.2
88,779 - MPMX19_04702 0.80 -0.9
88,779 - MPMX19_04702 0.80 +0.7
88,779 - MPMX19_04702 0.80 -0.5
88,779 - MPMX19_04702 0.80 +1.5
88,779 - MPMX19_04702 0.80 -0.5
88,779 - MPMX19_04702 0.80 -0.1
88,779 - MPMX19_04702 0.80 -1.2
88,779 - MPMX19_04702 0.80 -1.1
88,780 + MPMX19_04702 0.80 -1.5
88,780 + MPMX19_04702 0.80 -0.5
88,780 + MPMX19_04702 0.80 -1.5
88,780 + MPMX19_04702 0.80 +1.3
88,780 + MPMX19_04702 0.80 -0.9
88,781 - MPMX19_04702 0.80 -1.0
88,781 - MPMX19_04702 0.80 -2.1
88,781 - MPMX19_04702 0.80 -0.5
88,781 - MPMX19_04702 0.80 +0.0
88,781 - MPMX19_04702 0.80 -2.2
88,781 - MPMX19_04702 0.80 -0.2
88,781 - MPMX19_04702 0.80 +0.7
88,781 - MPMX19_04702 0.80 +0.4
88,781 - MPMX19_04702 0.80 -0.6
88,911 + +0.8
88,912 - -0.0
89,464 + MPMX19_04703 0.34 +0.1
89,464 + MPMX19_04703 0.34 -0.7
89,464 + MPMX19_04703 0.34 -1.2
89,464 + MPMX19_04703 0.34 +0.1
89,465 - MPMX19_04703 0.34 -0.8
89,465 - MPMX19_04703 0.34 -0.2
89,465 - MPMX19_04703 0.34 +2.1
89,467 + MPMX19_04703 0.34 -0.9
89,467 + MPMX19_04703 0.34 +0.4
89,468 - MPMX19_04703 0.34 +0.1
89,468 - MPMX19_04703 0.34 -0.3
89,468 - MPMX19_04703 0.34 +0.2
89,468 - MPMX19_04703 0.34 -0.1
89,468 - MPMX19_04703 0.34 -1.5
89,563 + MPMX19_04703 0.41 -0.2
89,563 + MPMX19_04703 0.41 -0.7
89,563 + MPMX19_04703 0.41 +0.1
89,563 + MPMX19_04703 0.41 +0.1
89,564 - MPMX19_04703 0.41 -0.7
89,564 - MPMX19_04703 0.41 -0.9
89,693 + MPMX19_04703 0.50 -0.5
89,693 + MPMX19_04703 0.50 -1.9
89,694 - MPMX19_04703 0.50 +1.1
89,861 - MPMX19_04703 0.62 -1.6

Or see this region's nucleotide sequence