Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04680 and MPMX19_04681 are separated by 6 nucleotides MPMX19_04681 and MPMX19_04682 are separated by 26 nucleotides MPMX19_04682 and MPMX19_04683 overlap by 4 nucleotides
MPMX19_04680: MPMX19_04680 - Inner membrane ABC transporter permease protein YdcV, at 66,188 to 67,024
_04680
MPMX19_04681: MPMX19_04681 - 5-hydroxyisourate hydrolase, at 67,031 to 67,384
_04681
MPMX19_04682: MPMX19_04682 - hypothetical protein, at 67,411 to 68,607
_04682
MPMX19_04683: MPMX19_04683 - Acylamidase, at 68,604 to 70,010
_04683
Position (kb) 67
68
69 Strain fitness (log2 ratio) -2
-1
0
1 at 66.756 kb on - strand, within MPMX19_04680 at 67.158 kb on + strand, within MPMX19_04681 at 67.158 kb on + strand, within MPMX19_04681 at 67.158 kb on + strand, within MPMX19_04681 at 67.159 kb on - strand, within MPMX19_04681 at 67.159 kb on - strand, within MPMX19_04681 at 67.615 kb on + strand, within MPMX19_04682 at 67.616 kb on - strand, within MPMX19_04682 at 67.987 kb on + strand, within MPMX19_04682 at 68.095 kb on + strand, within MPMX19_04682 at 68.096 kb on - strand, within MPMX19_04682 at 68.096 kb on - strand, within MPMX19_04682 at 68.545 kb on + strand at 68.545 kb on + strand at 68.545 kb on + strand at 68.545 kb on + strand at 68.545 kb on + strand at 68.546 kb on - strand at 68.546 kb on - strand at 68.546 kb on - strand at 68.546 kb on - strand at 68.546 kb on - strand at 69.210 kb on + strand, within MPMX19_04683 at 69.387 kb on + strand, within MPMX19_04683 at 69.567 kb on + strand, within MPMX19_04683 at 69.567 kb on + strand, within MPMX19_04683 at 69.568 kb on - strand, within MPMX19_04683 at 69.568 kb on - strand, within MPMX19_04683
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 66,756 - MPMX19_04680 0.68 +0.7 67,158 + MPMX19_04681 0.36 +0.4 67,158 + MPMX19_04681 0.36 -0.1 67,158 + MPMX19_04681 0.36 +0.1 67,159 - MPMX19_04681 0.36 -0.6 67,159 - MPMX19_04681 0.36 +1.7 67,615 + MPMX19_04682 0.17 -1.5 67,616 - MPMX19_04682 0.17 -1.5 67,987 + MPMX19_04682 0.48 +0.1 68,095 + MPMX19_04682 0.57 +0.3 68,096 - MPMX19_04682 0.57 -0.9 68,096 - MPMX19_04682 0.57 -2.1 68,545 + +1.4 68,545 + -1.9 68,545 + -1.2 68,545 + -0.5 68,545 + -1.2 68,546 - -0.0 68,546 - +0.2 68,546 - -0.9 68,546 - -1.2 68,546 - +0.5 69,210 + MPMX19_04683 0.43 -0.7 69,387 + MPMX19_04683 0.56 +0.6 69,567 + MPMX19_04683 0.68 -0.6 69,567 + MPMX19_04683 0.68 -0.1 69,568 - MPMX19_04683 0.69 +0.0 69,568 - MPMX19_04683 0.69 -0.5
Or see this region's nucleotide sequence