Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03900

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03899 and MPMX19_03900 are separated by 314 nucleotidesMPMX19_03900 and MPMX19_03901 are separated by 131 nucleotides MPMX19_03899: MPMX19_03899 - Ferrichrome receptor FcuA, at 172,429 to 174,945 _03899 MPMX19_03900: MPMX19_03900 - Hca operon transcriptional activator HcaR, at 175,260 to 176,150 _03900 MPMX19_03901: MPMX19_03901 - Glyoxylate/hydroxypyruvate reductase B, at 176,282 to 177,295 _03901 Position (kb) 175 176 177Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 174.320 kb on + strand, within MPMX19_03899at 174.320 kb on + strand, within MPMX19_03899at 174.320 kb on + strand, within MPMX19_03899at 174.320 kb on + strand, within MPMX19_03899at 174.320 kb on + strand, within MPMX19_03899at 174.320 kb on + strand, within MPMX19_03899at 174.320 kb on + strand, within MPMX19_03899at 174.320 kb on + strand, within MPMX19_03899at 174.320 kb on + strand, within MPMX19_03899at 174.321 kb on - strand, within MPMX19_03899at 174.321 kb on - strand, within MPMX19_03899at 174.321 kb on - strand, within MPMX19_03899at 174.321 kb on - strand, within MPMX19_03899at 174.321 kb on - strand, within MPMX19_03899at 174.321 kb on - strand, within MPMX19_03899at 174.321 kb on - strand, within MPMX19_03899at 174.321 kb on - strand, within MPMX19_03899at 174.321 kb on - strand, within MPMX19_03899at 174.321 kb on - strand, within MPMX19_03899at 174.321 kb on - strand, within MPMX19_03899at 174.321 kb on - strand, within MPMX19_03899at 174.407 kb on + strand, within MPMX19_03899at 174.407 kb on + strand, within MPMX19_03899at 174.407 kb on + strand, within MPMX19_03899at 174.407 kb on + strand, within MPMX19_03899at 174.408 kb on - strand, within MPMX19_03899at 174.555 kb on - strand, within MPMX19_03899at 174.937 kb on + strandat 174.938 kb on - strandat 174.938 kb on - strandat 174.938 kb on - strandat 174.945 kb on + strandat 174.945 kb on + strandat 174.945 kb on + strandat 174.945 kb on + strandat 174.945 kb on + strandat 174.945 kb on + strandat 174.945 kb on + strandat 174.945 kb on + strandat 174.945 kb on + strandat 174.945 kb on + strandat 174.946 kb on - strandat 174.946 kb on - strandat 174.946 kb on - strandat 174.946 kb on - strandat 174.946 kb on - strandat 174.946 kb on - strandat 174.946 kb on - strandat 174.946 kb on - strandat 174.946 kb on - strandat 174.946 kb on - strandat 174.948 kb on + strandat 174.949 kb on - strandat 175.031 kb on + strandat 175.032 kb on - strandat 175.033 kb on + strandat 175.033 kb on + strandat 175.034 kb on - strandat 175.035 kb on + strandat 175.035 kb on + strandat 175.035 kb on + strandat 175.036 kb on - strandat 175.142 kb on - strandat 175.226 kb on + strandat 175.226 kb on + strandat 175.227 kb on - strandat 175.227 kb on - strandat 175.227 kb on - strandat 175.244 kb on + strandat 175.244 kb on + strandat 175.244 kb on + strandat 175.244 kb on + strandat 175.244 kb on + strandat 175.244 kb on + strandat 175.244 kb on + strandat 175.244 kb on + strandat 175.244 kb on + strandat 175.244 kb on + strandat 175.244 kb on + strandat 175.244 kb on + strandat 175.244 kb on + strandat 175.244 kb on + strandat 175.244 kb on + strandat 175.244 kb on + strandat 175.244 kb on + strandat 175.245 kb on - strandat 175.245 kb on - strandat 175.245 kb on - strandat 175.245 kb on - strandat 175.245 kb on - strandat 175.245 kb on - strandat 175.245 kb on - strandat 175.245 kb on - strandat 175.245 kb on - strandat 175.245 kb on - strandat 175.245 kb on - strandat 175.245 kb on - strandat 175.248 kb on + strandat 175.248 kb on + strandat 175.248 kb on + strandat 175.248 kb on + strandat 175.248 kb on + strandat 175.248 kb on + strandat 175.248 kb on + strandat 175.249 kb on - strandat 175.249 kb on - strandat 175.249 kb on - strandat 175.249 kb on - strandat 175.249 kb on - strandat 175.249 kb on - strandat 175.249 kb on - strandat 175.249 kb on - strandat 175.249 kb on - strandat 175.566 kb on + strand, within MPMX19_03900at 175.566 kb on + strand, within MPMX19_03900at 175.566 kb on + strand, within MPMX19_03900at 175.566 kb on + strand, within MPMX19_03900at 175.566 kb on + strand, within MPMX19_03900at 175.566 kb on + strand, within MPMX19_03900at 175.566 kb on + strand, within MPMX19_03900at 175.566 kb on + strand, within MPMX19_03900at 175.566 kb on + strand, within MPMX19_03900at 175.566 kb on + strand, within MPMX19_03900at 175.567 kb on - strand, within MPMX19_03900at 175.567 kb on - strand, within MPMX19_03900at 175.567 kb on - strand, within MPMX19_03900at 175.567 kb on - strand, within MPMX19_03900at 175.567 kb on - strand, within MPMX19_03900at 175.866 kb on + strand, within MPMX19_03900at 175.866 kb on + strand, within MPMX19_03900at 175.866 kb on + strand, within MPMX19_03900at 175.866 kb on + strand, within MPMX19_03900at 175.866 kb on + strand, within MPMX19_03900at 176.026 kb on - strand, within MPMX19_03900at 176.073 kb on + strandat 176.235 kb on + strandat 176.666 kb on + strand, within MPMX19_03901at 176.667 kb on - strand, within MPMX19_03901at 176.667 kb on - strand, within MPMX19_03901at 176.970 kb on + strand, within MPMX19_03901at 176.971 kb on - strand, within MPMX19_03901at 176.971 kb on - strand, within MPMX19_03901at 176.971 kb on - strand, within MPMX19_03901at 176.971 kb on - strand, within MPMX19_03901at 176.971 kb on - strand, within MPMX19_03901at 176.971 kb on - strand, within MPMX19_03901at 177.005 kb on + strand, within MPMX19_03901at 177.005 kb on + strand, within MPMX19_03901at 177.005 kb on + strand, within MPMX19_03901at 177.006 kb on - strand, within MPMX19_03901at 177.057 kb on - strand, within MPMX19_03901at 177.057 kb on - strand, within MPMX19_03901at 177.063 kb on - strand, within MPMX19_03901

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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174,320 + MPMX19_03899 0.75 -0.1
174,320 + MPMX19_03899 0.75 +0.9
174,320 + MPMX19_03899 0.75 +0.6
174,320 + MPMX19_03899 0.75 -1.1
174,320 + MPMX19_03899 0.75 -0.2
174,320 + MPMX19_03899 0.75 +0.3
174,320 + MPMX19_03899 0.75 +0.3
174,320 + MPMX19_03899 0.75 +2.3
174,320 + MPMX19_03899 0.75 -1.1
174,321 - MPMX19_03899 0.75 +1.9
174,321 - MPMX19_03899 0.75 +0.9
174,321 - MPMX19_03899 0.75 +0.9
174,321 - MPMX19_03899 0.75 -0.5
174,321 - MPMX19_03899 0.75 -0.4
174,321 - MPMX19_03899 0.75 -0.7
174,321 - MPMX19_03899 0.75 +0.6
174,321 - MPMX19_03899 0.75 +0.2
174,321 - MPMX19_03899 0.75 -0.1
174,321 - MPMX19_03899 0.75 -1.0
174,321 - MPMX19_03899 0.75 -0.8
174,321 - MPMX19_03899 0.75 -0.1
174,407 + MPMX19_03899 0.79 -0.9
174,407 + MPMX19_03899 0.79 +2.5
174,407 + MPMX19_03899 0.79 -0.1
174,407 + MPMX19_03899 0.79 -1.2
174,408 - MPMX19_03899 0.79 -0.1
174,555 - MPMX19_03899 0.84 -0.6
174,937 + -1.8
174,938 - -0.1
174,938 - +0.9
174,938 - -0.9
174,945 + -1.1
174,945 + +0.2
174,945 + -0.7
174,945 + +0.1
174,945 + -0.7
174,945 + -1.4
174,945 + +0.2
174,945 + -0.3
174,945 + +0.4
174,945 + -0.5
174,946 - +0.3
174,946 - -0.1
174,946 - -0.3
174,946 - +0.9
174,946 - -0.9
174,946 - -0.8
174,946 - -1.4
174,946 - -0.4
174,946 - -0.5
174,946 - -2.1
174,948 + +0.0
174,949 - -1.1
175,031 + -0.9
175,032 - -1.4
175,033 + -0.1
175,033 + +0.1
175,034 - -0.4
175,035 + -0.4
175,035 + +0.4
175,035 + +0.4
175,036 - -0.7
175,142 - -1.7
175,226 + -0.8
175,226 + -2.4
175,227 - -1.4
175,227 - -0.6
175,227 - +0.2
175,244 + -1.8
175,244 + -1.4
175,244 + +0.5
175,244 + -0.5
175,244 + +1.3
175,244 + -0.2
175,244 + -1.3
175,244 + +0.3
175,244 + +0.3
175,244 + -0.4
175,244 + -0.4
175,244 + +0.9
175,244 + -0.1
175,244 + -1.4
175,244 + +0.0
175,244 + -1.1
175,244 + +0.6
175,245 - -1.9
175,245 - -0.6
175,245 - -0.4
175,245 - +0.2
175,245 - -1.4
175,245 - -0.4
175,245 - -1.6
175,245 - -0.6
175,245 - -0.7
175,245 - -1.1
175,245 - -3.1
175,245 - -0.9
175,248 + -1.1
175,248 + -2.3
175,248 + +0.2
175,248 + +0.7
175,248 + +0.0
175,248 + -1.7
175,248 + -0.5
175,249 - -1.4
175,249 - -1.4
175,249 - -0.2
175,249 - -0.5
175,249 - -0.3
175,249 - -0.3
175,249 - -2.1
175,249 - -0.3
175,249 - -2.6
175,566 + MPMX19_03900 0.34 -1.2
175,566 + MPMX19_03900 0.34 -1.5
175,566 + MPMX19_03900 0.34 -0.7
175,566 + MPMX19_03900 0.34 -2.7
175,566 + MPMX19_03900 0.34 -1.4
175,566 + MPMX19_03900 0.34 -1.7
175,566 + MPMX19_03900 0.34 -1.9
175,566 + MPMX19_03900 0.34 -1.9
175,566 + MPMX19_03900 0.34 -0.7
175,566 + MPMX19_03900 0.34 -0.4
175,567 - MPMX19_03900 0.34 -0.1
175,567 - MPMX19_03900 0.34 +0.6
175,567 - MPMX19_03900 0.34 -1.1
175,567 - MPMX19_03900 0.34 -0.1
175,567 - MPMX19_03900 0.34 -0.4
175,866 + MPMX19_03900 0.68 -1.7
175,866 + MPMX19_03900 0.68 -0.7
175,866 + MPMX19_03900 0.68 -0.2
175,866 + MPMX19_03900 0.68 -0.1
175,866 + MPMX19_03900 0.68 -1.1
176,026 - MPMX19_03900 0.86 -1.7
176,073 + -0.9
176,235 + -0.5
176,666 + MPMX19_03901 0.38 -0.9
176,667 - MPMX19_03901 0.38 -0.3
176,667 - MPMX19_03901 0.38 -0.6
176,970 + MPMX19_03901 0.68 +0.5
176,971 - MPMX19_03901 0.68 -1.7
176,971 - MPMX19_03901 0.68 -1.4
176,971 - MPMX19_03901 0.68 +0.2
176,971 - MPMX19_03901 0.68 +0.2
176,971 - MPMX19_03901 0.68 -1.4
176,971 - MPMX19_03901 0.68 -0.6
177,005 + MPMX19_03901 0.71 -0.9
177,005 + MPMX19_03901 0.71 -0.1
177,005 + MPMX19_03901 0.71 -0.3
177,006 - MPMX19_03901 0.71 +0.0
177,057 - MPMX19_03901 0.76 -0.1
177,057 - MPMX19_03901 0.76 -0.2
177,063 - MPMX19_03901 0.77 -0.3

Or see this region's nucleotide sequence