Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03560

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03559 and MPMX19_03560 are separated by 226 nucleotidesMPMX19_03560 and MPMX19_03561 are separated by 116 nucleotidesMPMX19_03561 and MPMX19_03562 are separated by 34 nucleotides MPMX19_03559: MPMX19_03559 - Acetoin dehydrogenase operon transcriptional activator AcoR, at 978,460 to 980,553 _03559 MPMX19_03560: MPMX19_03560 - 60 kDa chaperonin, at 980,780 to 982,420 _03560 MPMX19_03561: MPMX19_03561 - Propane 2-monooxygenase, effector component, at 982,537 to 982,893 _03561 MPMX19_03562: MPMX19_03562 - Propane 2-monooxygenase, hydroxylase component small subunit, at 982,928 to 984,061 _03562 Position (kb) 980 981 982 983Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 979.808 kb on + strand, within MPMX19_03559at 979.808 kb on + strand, within MPMX19_03559at 979.808 kb on + strand, within MPMX19_03559at 979.809 kb on - strand, within MPMX19_03559at 979.809 kb on - strand, within MPMX19_03559at 980.036 kb on + strand, within MPMX19_03559at 980.036 kb on + strand, within MPMX19_03559at 980.037 kb on - strand, within MPMX19_03559at 980.037 kb on - strand, within MPMX19_03559at 980.037 kb on - strand, within MPMX19_03559at 980.037 kb on - strand, within MPMX19_03559at 980.037 kb on - strand, within MPMX19_03559at 980.316 kb on + strand, within MPMX19_03559at 980.316 kb on + strand, within MPMX19_03559at 980.316 kb on + strand, within MPMX19_03559at 980.316 kb on + strand, within MPMX19_03559at 980.317 kb on - strand, within MPMX19_03559at 980.317 kb on - strand, within MPMX19_03559at 980.317 kb on - strand, within MPMX19_03559at 980.632 kb on + strandat 980.633 kb on - strandat 980.702 kb on + strandat 980.705 kb on + strandat 980.705 kb on + strandat 980.705 kb on + strandat 980.706 kb on - strandat 980.706 kb on - strandat 980.706 kb on - strandat 980.706 kb on - strandat 980.713 kb on + strandat 980.713 kb on + strandat 980.714 kb on - strandat 980.714 kb on - strandat 980.714 kb on - strandat 980.714 kb on - strandat 980.714 kb on - strandat 980.714 kb on - strandat 980.714 kb on - strandat 980.714 kb on - strandat 980.714 kb on - strandat 980.718 kb on + strandat 980.718 kb on + strandat 980.719 kb on - strandat 980.719 kb on - strandat 980.793 kb on + strandat 981.176 kb on - strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.768 kb on + strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.769 kb on - strand, within MPMX19_03560at 981.892 kb on - strand, within MPMX19_03560at 982.219 kb on + strand, within MPMX19_03560at 982.219 kb on + strand, within MPMX19_03560at 982.219 kb on + strand, within MPMX19_03560at 982.220 kb on - strand, within MPMX19_03560at 982.544 kb on + strandat 982.544 kb on + strandat 982.544 kb on + strandat 982.544 kb on + strandat 982.545 kb on - strandat 982.545 kb on - strandat 982.545 kb on - strandat 982.613 kb on + strand, within MPMX19_03561at 982.613 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.736 kb on + strand, within MPMX19_03561at 982.737 kb on - strand, within MPMX19_03561at 982.737 kb on - strand, within MPMX19_03561at 982.737 kb on - strand, within MPMX19_03561at 982.737 kb on - strand, within MPMX19_03561at 982.737 kb on - strand, within MPMX19_03561at 982.737 kb on - strand, within MPMX19_03561at 983.253 kb on + strand, within MPMX19_03562at 983.253 kb on + strand, within MPMX19_03562at 983.253 kb on + strand, within MPMX19_03562at 983.382 kb on + strand, within MPMX19_03562at 983.382 kb on + strand, within MPMX19_03562at 983.383 kb on - strand, within MPMX19_03562at 983.383 kb on - strand, within MPMX19_03562at 983.413 kb on + strand, within MPMX19_03562at 983.413 kb on + strand, within MPMX19_03562at 983.414 kb on - strand, within MPMX19_03562at 983.414 kb on - strand, within MPMX19_03562

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
979,808 + MPMX19_03559 0.64 -0.4
979,808 + MPMX19_03559 0.64 -1.1
979,808 + MPMX19_03559 0.64 -1.3
979,809 - MPMX19_03559 0.64 -2.2
979,809 - MPMX19_03559 0.64 -0.6
980,036 + MPMX19_03559 0.75 -0.3
980,036 + MPMX19_03559 0.75 +0.4
980,037 - MPMX19_03559 0.75 -2.8
980,037 - MPMX19_03559 0.75 -0.6
980,037 - MPMX19_03559 0.75 -0.2
980,037 - MPMX19_03559 0.75 +0.7
980,037 - MPMX19_03559 0.75 +1.1
980,316 + MPMX19_03559 0.89 -1.2
980,316 + MPMX19_03559 0.89 -0.9
980,316 + MPMX19_03559 0.89 +0.7
980,316 + MPMX19_03559 0.89 -0.5
980,317 - MPMX19_03559 0.89 +0.5
980,317 - MPMX19_03559 0.89 +1.1
980,317 - MPMX19_03559 0.89 +0.5
980,632 + -1.9
980,633 - +0.2
980,702 + -0.9
980,705 + -1.2
980,705 + -0.4
980,705 + -0.7
980,706 - -0.5
980,706 - -0.6
980,706 - -0.6
980,706 - -0.3
980,713 + +0.1
980,713 + +1.7
980,714 - +1.5
980,714 - -0.7
980,714 - +0.4
980,714 - +1.1
980,714 - +0.4
980,714 - +0.8
980,714 - -1.5
980,714 - -0.2
980,714 - +0.3
980,718 + -0.2
980,718 + +0.1
980,719 - -1.1
980,719 - +1.1
980,793 + -0.5
981,176 - MPMX19_03560 0.24 -0.1
981,768 + MPMX19_03560 0.60 +1.4
981,768 + MPMX19_03560 0.60 -1.2
981,768 + MPMX19_03560 0.60 +1.4
981,768 + MPMX19_03560 0.60 -0.2
981,768 + MPMX19_03560 0.60 +1.1
981,768 + MPMX19_03560 0.60 -0.8
981,768 + MPMX19_03560 0.60 -0.7
981,768 + MPMX19_03560 0.60 -0.8
981,768 + MPMX19_03560 0.60 -1.7
981,768 + MPMX19_03560 0.60 -2.2
981,768 + MPMX19_03560 0.60 +0.7
981,768 + MPMX19_03560 0.60 +0.5
981,768 + MPMX19_03560 0.60 -0.7
981,768 + MPMX19_03560 0.60 +0.7
981,768 + MPMX19_03560 0.60 +0.1
981,769 - MPMX19_03560 0.60 -1.5
981,769 - MPMX19_03560 0.60 +0.7
981,769 - MPMX19_03560 0.60 -0.9
981,769 - MPMX19_03560 0.60 -1.0
981,769 - MPMX19_03560 0.60 +0.3
981,769 - MPMX19_03560 0.60 -0.4
981,769 - MPMX19_03560 0.60 -0.2
981,769 - MPMX19_03560 0.60 -1.2
981,769 - MPMX19_03560 0.60 -0.1
981,769 - MPMX19_03560 0.60 +1.1
981,769 - MPMX19_03560 0.60 -1.2
981,769 - MPMX19_03560 0.60 -0.9
981,769 - MPMX19_03560 0.60 -0.6
981,892 - MPMX19_03560 0.68 -0.9
982,219 + MPMX19_03560 0.88 -0.9
982,219 + MPMX19_03560 0.88 -1.2
982,219 + MPMX19_03560 0.88 -1.8
982,220 - MPMX19_03560 0.88 -0.4
982,544 + -0.7
982,544 + -0.9
982,544 + -0.9
982,544 + -2.2
982,545 - +0.8
982,545 - +0.3
982,545 - -0.0
982,613 + MPMX19_03561 0.21 -1.6
982,613 + MPMX19_03561 0.21 -0.5
982,736 + MPMX19_03561 0.56 +0.5
982,736 + MPMX19_03561 0.56 +0.1
982,736 + MPMX19_03561 0.56 -0.1
982,736 + MPMX19_03561 0.56 -0.9
982,736 + MPMX19_03561 0.56 -1.2
982,736 + MPMX19_03561 0.56 -1.1
982,736 + MPMX19_03561 0.56 -1.6
982,736 + MPMX19_03561 0.56 +2.1
982,737 - MPMX19_03561 0.56 -1.5
982,737 - MPMX19_03561 0.56 -0.9
982,737 - MPMX19_03561 0.56 -0.2
982,737 - MPMX19_03561 0.56 +0.1
982,737 - MPMX19_03561 0.56 -1.7
982,737 - MPMX19_03561 0.56 +0.4
983,253 + MPMX19_03562 0.29 -0.3
983,253 + MPMX19_03562 0.29 -0.7
983,253 + MPMX19_03562 0.29 +0.8
983,382 + MPMX19_03562 0.40 +0.3
983,382 + MPMX19_03562 0.40 +0.6
983,383 - MPMX19_03562 0.40 +0.1
983,383 - MPMX19_03562 0.40 -0.6
983,413 + MPMX19_03562 0.43 -0.5
983,413 + MPMX19_03562 0.43 +0.0
983,414 - MPMX19_03562 0.43 +0.8
983,414 - MPMX19_03562 0.43 -0.0

Or see this region's nucleotide sequence