Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03384

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03382 and MPMX19_03383 are separated by 5 nucleotidesMPMX19_03383 and MPMX19_03384 are separated by 89 nucleotidesMPMX19_03384 and MPMX19_03385 are separated by 273 nucleotides MPMX19_03382: MPMX19_03382 - Biotin carboxylase, at 766,511 to 767,890 _03382 MPMX19_03383: MPMX19_03383 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 767,896 to 768,132 _03383 MPMX19_03384: MPMX19_03384 - 5-oxoprolinase subunit A, at 768,222 to 769,007 _03384 MPMX19_03385: MPMX19_03385 - HTH-type transcriptional regulator HdfR, at 769,281 to 770,192 _03385 Position (kb) 768 769 770Strain fitness (log2 ratio) -2 -1 0 1 2at 767.295 kb on + strand, within MPMX19_03382at 767.295 kb on + strand, within MPMX19_03382at 767.295 kb on + strand, within MPMX19_03382at 767.296 kb on - strand, within MPMX19_03382at 767.296 kb on - strand, within MPMX19_03382at 767.709 kb on + strand, within MPMX19_03382at 767.709 kb on + strand, within MPMX19_03382at 767.709 kb on + strand, within MPMX19_03382at 767.710 kb on - strand, within MPMX19_03382at 767.710 kb on - strand, within MPMX19_03382at 767.710 kb on - strand, within MPMX19_03382at 767.710 kb on - strand, within MPMX19_03382at 767.710 kb on - strand, within MPMX19_03382at 767.793 kb on + strandat 767.793 kb on + strandat 767.793 kb on + strandat 767.793 kb on + strandat 767.793 kb on + strandat 767.793 kb on + strandat 767.794 kb on - strandat 767.794 kb on - strandat 767.794 kb on - strandat 767.794 kb on - strandat 767.794 kb on - strandat 767.810 kb on + strandat 767.811 kb on - strandat 767.811 kb on - strandat 767.811 kb on - strandat 768.095 kb on + strand, within MPMX19_03383at 768.095 kb on + strand, within MPMX19_03383at 768.095 kb on + strand, within MPMX19_03383at 768.205 kb on + strandat 768.205 kb on + strandat 768.484 kb on + strand, within MPMX19_03384at 768.484 kb on + strand, within MPMX19_03384at 768.484 kb on + strand, within MPMX19_03384at 768.484 kb on + strand, within MPMX19_03384at 768.484 kb on + strand, within MPMX19_03384at 768.484 kb on + strand, within MPMX19_03384at 768.485 kb on - strand, within MPMX19_03384at 768.485 kb on - strand, within MPMX19_03384at 768.485 kb on - strand, within MPMX19_03384at 768.499 kb on + strand, within MPMX19_03384at 768.500 kb on - strand, within MPMX19_03384at 768.500 kb on - strand, within MPMX19_03384at 768.555 kb on + strand, within MPMX19_03384at 768.555 kb on + strand, within MPMX19_03384at 768.555 kb on + strand, within MPMX19_03384at 768.555 kb on + strand, within MPMX19_03384at 768.555 kb on + strand, within MPMX19_03384at 768.556 kb on - strand, within MPMX19_03384at 768.556 kb on - strand, within MPMX19_03384at 768.556 kb on - strand, within MPMX19_03384at 768.647 kb on + strand, within MPMX19_03384at 768.647 kb on + strand, within MPMX19_03384at 768.647 kb on + strand, within MPMX19_03384at 768.648 kb on - strand, within MPMX19_03384at 768.648 kb on - strand, within MPMX19_03384at 768.648 kb on - strand, within MPMX19_03384at 768.648 kb on - strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.649 kb on + strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.650 kb on - strand, within MPMX19_03384at 768.727 kb on + strand, within MPMX19_03384at 768.727 kb on + strand, within MPMX19_03384at 768.727 kb on + strand, within MPMX19_03384at 768.728 kb on - strand, within MPMX19_03384at 768.998 kb on + strandat 768.998 kb on + strandat 768.998 kb on + strandat 768.999 kb on - strandat 768.999 kb on - strandat 769.013 kb on + strandat 769.013 kb on + strandat 769.013 kb on + strandat 769.014 kb on - strandat 769.014 kb on - strandat 769.014 kb on - strandat 769.169 kb on - strandat 769.219 kb on + strandat 769.220 kb on - strandat 769.220 kb on - strandat 769.221 kb on + strandat 769.222 kb on - strandat 769.229 kb on - strandat 769.305 kb on + strandat 769.305 kb on + strandat 769.575 kb on + strand, within MPMX19_03385at 769.575 kb on + strand, within MPMX19_03385at 769.575 kb on + strand, within MPMX19_03385at 769.575 kb on + strand, within MPMX19_03385at 769.575 kb on + strand, within MPMX19_03385at 769.575 kb on + strand, within MPMX19_03385at 769.576 kb on - strand, within MPMX19_03385at 769.576 kb on - strand, within MPMX19_03385at 769.576 kb on - strand, within MPMX19_03385at 769.591 kb on - strand, within MPMX19_03385at 769.591 kb on - strand, within MPMX19_03385at 769.629 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.854 kb on + strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.855 kb on - strand, within MPMX19_03385at 769.899 kb on + strand, within MPMX19_03385at 769.899 kb on + strand, within MPMX19_03385at 769.899 kb on + strand, within MPMX19_03385at 769.900 kb on - strand, within MPMX19_03385

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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767,295 + MPMX19_03382 0.57 -0.2
767,295 + MPMX19_03382 0.57 +0.1
767,295 + MPMX19_03382 0.57 -0.5
767,296 - MPMX19_03382 0.57 -0.7
767,296 - MPMX19_03382 0.57 -1.2
767,709 + MPMX19_03382 0.87 +0.1
767,709 + MPMX19_03382 0.87 -1.7
767,709 + MPMX19_03382 0.87 -0.2
767,710 - MPMX19_03382 0.87 +0.1
767,710 - MPMX19_03382 0.87 -1.7
767,710 - MPMX19_03382 0.87 -0.2
767,710 - MPMX19_03382 0.87 -0.3
767,710 - MPMX19_03382 0.87 +0.1
767,793 + +0.1
767,793 + +1.6
767,793 + -0.9
767,793 + -1.2
767,793 + +0.1
767,793 + +0.1
767,794 - -1.2
767,794 - +0.1
767,794 - -0.1
767,794 - +1.1
767,794 - +0.1
767,810 + -1.6
767,811 - -0.5
767,811 - +0.7
767,811 - -1.1
768,095 + MPMX19_03383 0.84 -0.9
768,095 + MPMX19_03383 0.84 -0.0
768,095 + MPMX19_03383 0.84 +0.4
768,205 + -0.9
768,205 + -1.2
768,484 + MPMX19_03384 0.33 +0.8
768,484 + MPMX19_03384 0.33 -1.7
768,484 + MPMX19_03384 0.33 -1.8
768,484 + MPMX19_03384 0.33 +0.1
768,484 + MPMX19_03384 0.33 -0.8
768,484 + MPMX19_03384 0.33 -0.5
768,485 - MPMX19_03384 0.33 +0.3
768,485 - MPMX19_03384 0.33 +0.6
768,485 - MPMX19_03384 0.33 -0.9
768,499 + MPMX19_03384 0.35 +0.7
768,500 - MPMX19_03384 0.35 -0.8
768,500 - MPMX19_03384 0.35 +2.4
768,555 + MPMX19_03384 0.42 -1.2
768,555 + MPMX19_03384 0.42 -2.1
768,555 + MPMX19_03384 0.42 -0.5
768,555 + MPMX19_03384 0.42 -0.7
768,555 + MPMX19_03384 0.42 -1.5
768,556 - MPMX19_03384 0.42 -1.2
768,556 - MPMX19_03384 0.42 +0.1
768,556 - MPMX19_03384 0.42 -1.7
768,647 + MPMX19_03384 0.54 -2.7
768,647 + MPMX19_03384 0.54 -0.7
768,647 + MPMX19_03384 0.54 -1.9
768,648 - MPMX19_03384 0.54 -0.9
768,648 - MPMX19_03384 0.54 -0.3
768,648 - MPMX19_03384 0.54 -1.5
768,648 - MPMX19_03384 0.54 -0.5
768,649 + MPMX19_03384 0.54 -1.5
768,649 + MPMX19_03384 0.54 -0.1
768,649 + MPMX19_03384 0.54 +0.1
768,649 + MPMX19_03384 0.54 -0.6
768,649 + MPMX19_03384 0.54 -1.0
768,649 + MPMX19_03384 0.54 +0.4
768,649 + MPMX19_03384 0.54 -0.1
768,649 + MPMX19_03384 0.54 -1.4
768,649 + MPMX19_03384 0.54 +0.2
768,649 + MPMX19_03384 0.54 -1.5
768,649 + MPMX19_03384 0.54 +1.4
768,649 + MPMX19_03384 0.54 -0.7
768,649 + MPMX19_03384 0.54 -0.8
768,649 + MPMX19_03384 0.54 -1.2
768,649 + MPMX19_03384 0.54 -0.8
768,649 + MPMX19_03384 0.54 -2.2
768,649 + MPMX19_03384 0.54 -1.2
768,650 - MPMX19_03384 0.54 -0.4
768,650 - MPMX19_03384 0.54 -0.5
768,650 - MPMX19_03384 0.54 -1.7
768,650 - MPMX19_03384 0.54 -0.5
768,650 - MPMX19_03384 0.54 -1.6
768,650 - MPMX19_03384 0.54 +0.1
768,650 - MPMX19_03384 0.54 -0.2
768,650 - MPMX19_03384 0.54 -0.9
768,650 - MPMX19_03384 0.54 -1.7
768,727 + MPMX19_03384 0.64 +0.1
768,727 + MPMX19_03384 0.64 -0.5
768,727 + MPMX19_03384 0.64 -1.9
768,728 - MPMX19_03384 0.64 -2.1
768,998 + +1.1
768,998 + -0.9
768,998 + -2.7
768,999 - +0.3
768,999 - +0.7
769,013 + -0.9
769,013 + -0.9
769,013 + -0.4
769,014 - -0.5
769,014 - -0.5
769,014 - -0.3
769,169 - -0.2
769,219 + -0.5
769,220 - -0.7
769,220 - -0.6
769,221 + -0.4
769,222 - -0.6
769,229 - +0.5
769,305 + -1.0
769,305 + +0.1
769,575 + MPMX19_03385 0.32 -0.5
769,575 + MPMX19_03385 0.32 -0.6
769,575 + MPMX19_03385 0.32 -0.5
769,575 + MPMX19_03385 0.32 +0.5
769,575 + MPMX19_03385 0.32 -1.2
769,575 + MPMX19_03385 0.32 +1.1
769,576 - MPMX19_03385 0.32 -0.8
769,576 - MPMX19_03385 0.32 +0.7
769,576 - MPMX19_03385 0.32 +0.6
769,591 - MPMX19_03385 0.34 +1.4
769,591 - MPMX19_03385 0.34 -0.5
769,629 + MPMX19_03385 0.38 +0.3
769,854 + MPMX19_03385 0.63 -0.8
769,854 + MPMX19_03385 0.63 -0.7
769,854 + MPMX19_03385 0.63 +1.1
769,854 + MPMX19_03385 0.63 -0.9
769,854 + MPMX19_03385 0.63 -0.8
769,854 + MPMX19_03385 0.63 -1.2
769,854 + MPMX19_03385 0.63 +0.4
769,854 + MPMX19_03385 0.63 -1.7
769,854 + MPMX19_03385 0.63 -1.4
769,854 + MPMX19_03385 0.63 -0.2
769,854 + MPMX19_03385 0.63 +1.1
769,854 + MPMX19_03385 0.63 +0.1
769,854 + MPMX19_03385 0.63 +0.1
769,854 + MPMX19_03385 0.63 -0.2
769,855 - MPMX19_03385 0.63 -1.7
769,855 - MPMX19_03385 0.63 +0.1
769,855 - MPMX19_03385 0.63 -1.3
769,855 - MPMX19_03385 0.63 +0.1
769,855 - MPMX19_03385 0.63 -0.2
769,855 - MPMX19_03385 0.63 -0.9
769,855 - MPMX19_03385 0.63 -1.2
769,855 - MPMX19_03385 0.63 +0.2
769,855 - MPMX19_03385 0.63 -0.1
769,855 - MPMX19_03385 0.63 -0.2
769,855 - MPMX19_03385 0.63 +0.3
769,855 - MPMX19_03385 0.63 -0.7
769,855 - MPMX19_03385 0.63 -0.3
769,855 - MPMX19_03385 0.63 +0.4
769,855 - MPMX19_03385 0.63 -0.2
769,899 + MPMX19_03385 0.68 -0.7
769,899 + MPMX19_03385 0.68 -0.4
769,899 + MPMX19_03385 0.68 +0.3
769,900 - MPMX19_03385 0.68 -0.9

Or see this region's nucleotide sequence