Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03236

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03234 and MPMX19_03235 overlap by 4 nucleotidesMPMX19_03235 and MPMX19_03236 are separated by 164 nucleotidesMPMX19_03236 and MPMX19_03237 overlap by 4 nucleotidesMPMX19_03237 and MPMX19_03238 are separated by 15 nucleotides MPMX19_03234: MPMX19_03234 - hypothetical protein, at 537,150 to 538,247 _03234 MPMX19_03235: MPMX19_03235 - Iron(3+)-hydroxamate import ATP-binding protein FhuC, at 538,244 to 539,056 _03235 MPMX19_03236: MPMX19_03236 - Protein MbtH, at 539,221 to 539,436 _03236 MPMX19_03237: MPMX19_03237 - Linear gramicidin dehydrogenase LgrE, at 539,433 to 540,182 _03237 MPMX19_03238: MPMX19_03238 - hypothetical protein, at 540,198 to 541,208 _03238 Position (kb) 539 540Strain fitness (log2 ratio) -2 -1 0 1 2at 538.284 kb on + strandat 538.284 kb on + strandat 538.285 kb on - strandat 538.590 kb on - strand, within MPMX19_03235at 538.590 kb on - strand, within MPMX19_03235at 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.991 kb on + strandat 538.992 kb on - strandat 538.992 kb on - strandat 538.992 kb on - strandat 538.992 kb on - strandat 539.109 kb on + strandat 539.110 kb on - strandat 539.138 kb on - strandat 539.278 kb on + strand, within MPMX19_03236at 539.278 kb on + strand, within MPMX19_03236at 539.278 kb on + strand, within MPMX19_03236at 539.278 kb on + strand, within MPMX19_03236at 539.278 kb on + strand, within MPMX19_03236at 539.278 kb on + strand, within MPMX19_03236at 539.278 kb on + strand, within MPMX19_03236at 539.279 kb on - strand, within MPMX19_03236at 539.279 kb on - strand, within MPMX19_03236at 539.279 kb on - strand, within MPMX19_03236at 539.279 kb on - strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.296 kb on + strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.297 kb on - strand, within MPMX19_03236at 539.362 kb on + strand, within MPMX19_03236at 539.363 kb on - strand, within MPMX19_03236at 539.363 kb on - strand, within MPMX19_03236at 539.502 kb on + strandat 539.503 kb on - strandat 539.503 kb on - strandat 539.503 kb on - strandat 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.526 kb on + strand, within MPMX19_03237at 539.527 kb on - strand, within MPMX19_03237at 539.527 kb on - strand, within MPMX19_03237at 539.527 kb on - strand, within MPMX19_03237at 539.527 kb on - strand, within MPMX19_03237at 539.527 kb on - strand, within MPMX19_03237at 539.527 kb on - strand, within MPMX19_03237at 539.962 kb on - strand, within MPMX19_03237at 539.967 kb on + strand, within MPMX19_03237at 539.967 kb on + strand, within MPMX19_03237at 540.059 kb on - strand, within MPMX19_03237at 540.209 kb on + strandat 540.209 kb on + strandat 540.209 kb on + strandat 540.209 kb on + strandat 540.209 kb on + strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.210 kb on - strandat 540.418 kb on + strand, within MPMX19_03238at 540.419 kb on - strand, within MPMX19_03238at 540.419 kb on - strand, within MPMX19_03238

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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538,284 + -0.8
538,284 + +0.0
538,285 - -0.2
538,590 - MPMX19_03235 0.43 -1.5
538,590 - MPMX19_03235 0.43 +0.6
538,991 + -1.5
538,991 + -0.8
538,991 + -1.1
538,991 + -1.0
538,991 + -0.1
538,991 + +2.0
538,991 + +0.0
538,991 + -0.5
538,991 + +0.6
538,992 - -1.3
538,992 - +0.3
538,992 - +0.0
538,992 - +1.8
539,109 + -1.8
539,110 - +0.7
539,138 - -0.6
539,278 + MPMX19_03236 0.26 -0.1
539,278 + MPMX19_03236 0.26 -0.8
539,278 + MPMX19_03236 0.26 +1.5
539,278 + MPMX19_03236 0.26 -0.5
539,278 + MPMX19_03236 0.26 -0.6
539,278 + MPMX19_03236 0.26 +0.7
539,278 + MPMX19_03236 0.26 +0.0
539,279 - MPMX19_03236 0.27 -0.5
539,279 - MPMX19_03236 0.27 +0.0
539,279 - MPMX19_03236 0.27 -0.8
539,279 - MPMX19_03236 0.27 +1.0
539,296 + MPMX19_03236 0.35 -0.0
539,296 + MPMX19_03236 0.35 -0.1
539,296 + MPMX19_03236 0.35 -1.0
539,296 + MPMX19_03236 0.35 +0.0
539,296 + MPMX19_03236 0.35 -1.0
539,296 + MPMX19_03236 0.35 -0.3
539,296 + MPMX19_03236 0.35 -0.2
539,296 + MPMX19_03236 0.35 -0.3
539,297 - MPMX19_03236 0.35 -0.7
539,297 - MPMX19_03236 0.35 -1.3
539,297 - MPMX19_03236 0.35 +0.3
539,297 - MPMX19_03236 0.35 -1.0
539,297 - MPMX19_03236 0.35 -0.3
539,297 - MPMX19_03236 0.35 -0.3
539,297 - MPMX19_03236 0.35 -1.1
539,362 + MPMX19_03236 0.65 -2.3
539,363 - MPMX19_03236 0.66 -0.3
539,363 - MPMX19_03236 0.66 -0.5
539,502 + -0.5
539,503 - +1.0
539,503 - -1.2
539,503 - +0.0
539,526 + MPMX19_03237 0.12 -1.3
539,526 + MPMX19_03237 0.12 +0.0
539,526 + MPMX19_03237 0.12 -2.0
539,526 + MPMX19_03237 0.12 -0.3
539,526 + MPMX19_03237 0.12 -1.0
539,526 + MPMX19_03237 0.12 +0.5
539,526 + MPMX19_03237 0.12 -0.6
539,526 + MPMX19_03237 0.12 +0.1
539,526 + MPMX19_03237 0.12 +1.0
539,526 + MPMX19_03237 0.12 +0.0
539,527 - MPMX19_03237 0.13 -1.5
539,527 - MPMX19_03237 0.13 +1.0
539,527 - MPMX19_03237 0.13 +0.6
539,527 - MPMX19_03237 0.13 -2.3
539,527 - MPMX19_03237 0.13 +0.7
539,527 - MPMX19_03237 0.13 -0.7
539,962 - MPMX19_03237 0.71 +0.5
539,967 + MPMX19_03237 0.71 -1.0
539,967 + MPMX19_03237 0.71 -1.4
540,059 - MPMX19_03237 0.83 -0.8
540,209 + -0.1
540,209 + -0.5
540,209 + +0.3
540,209 + -0.1
540,209 + +0.6
540,210 - -2.3
540,210 - -0.4
540,210 - +0.4
540,210 - -1.4
540,210 - +0.3
540,210 - -1.5
540,210 - -0.2
540,210 - +0.0
540,210 - -0.5
540,418 + MPMX19_03238 0.22 -0.7
540,419 - MPMX19_03238 0.22 -0.2
540,419 - MPMX19_03238 0.22 -1.0

Or see this region's nucleotide sequence