Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03219

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03218 and MPMX19_03219 are separated by 186 nucleotidesMPMX19_03219 and MPMX19_03220 are separated by 121 nucleotidesMPMX19_03220 and MPMX19_03221 are separated by 8 nucleotides MPMX19_03218: MPMX19_03218 - Haloalkane dehalogenase, at 517,694 to 518,767 _03218 MPMX19_03219: MPMX19_03219 - putative ABC transporter ATP-binding protein YheS, at 518,954 to 520,552 _03219 MPMX19_03220: MPMX19_03220 - hypothetical protein, at 520,674 to 521,312 _03220 MPMX19_03221: MPMX19_03221 - Adaptive-response sensory-kinase SasA, at 521,321 to 522,673 _03221 Position (kb) 518 519 520 521Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 517.959 kb on + strand, within MPMX19_03218at 517.959 kb on + strand, within MPMX19_03218at 517.960 kb on - strand, within MPMX19_03218at 517.960 kb on - strand, within MPMX19_03218at 517.960 kb on - strand, within MPMX19_03218at 518.086 kb on + strand, within MPMX19_03218at 518.087 kb on - strand, within MPMX19_03218at 518.087 kb on - strand, within MPMX19_03218at 518.088 kb on + strand, within MPMX19_03218at 518.088 kb on + strand, within MPMX19_03218at 518.088 kb on + strand, within MPMX19_03218at 518.089 kb on - strand, within MPMX19_03218at 518.127 kb on + strand, within MPMX19_03218at 518.128 kb on - strand, within MPMX19_03218at 518.128 kb on - strand, within MPMX19_03218at 518.128 kb on - strand, within MPMX19_03218at 518.131 kb on - strand, within MPMX19_03218at 518.131 kb on - strand, within MPMX19_03218at 518.136 kb on + strand, within MPMX19_03218at 518.137 kb on - strand, within MPMX19_03218at 518.137 kb on - strand, within MPMX19_03218at 518.137 kb on - strand, within MPMX19_03218at 518.203 kb on - strand, within MPMX19_03218at 518.284 kb on - strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.469 kb on + strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.470 kb on - strand, within MPMX19_03218at 518.484 kb on + strand, within MPMX19_03218at 518.484 kb on + strand, within MPMX19_03218at 518.484 kb on + strand, within MPMX19_03218at 518.485 kb on - strand, within MPMX19_03218at 518.485 kb on - strand, within MPMX19_03218at 518.542 kb on - strand, within MPMX19_03218at 518.542 kb on - strand, within MPMX19_03218at 518.769 kb on + strandat 518.769 kb on + strandat 518.769 kb on + strandat 518.769 kb on + strandat 518.769 kb on + strandat 518.769 kb on + strandat 518.769 kb on + strandat 518.769 kb on + strandat 518.770 kb on - strandat 518.770 kb on - strandat 518.770 kb on - strandat 518.770 kb on - strandat 518.770 kb on - strandat 518.770 kb on - strandat 518.770 kb on - strandat 518.770 kb on - strandat 518.789 kb on + strandat 518.789 kb on + strandat 518.819 kb on + strandat 518.819 kb on + strandat 518.819 kb on + strandat 518.819 kb on + strandat 518.819 kb on + strandat 518.820 kb on - strandat 518.820 kb on - strandat 518.820 kb on - strandat 518.820 kb on - strandat 518.862 kb on + strandat 518.862 kb on + strandat 518.862 kb on + strandat 518.862 kb on + strandat 518.862 kb on + strandat 518.863 kb on - strandat 518.863 kb on - strandat 518.863 kb on - strandat 518.891 kb on + strandat 518.891 kb on + strandat 518.891 kb on + strandat 518.892 kb on - strandat 518.955 kb on + strandat 518.955 kb on + strandat 518.955 kb on + strandat 518.955 kb on + strandat 518.956 kb on - strandat 519.057 kb on + strandat 519.057 kb on + strandat 519.057 kb on + strandat 519.057 kb on + strandat 519.057 kb on + strandat 519.058 kb on - strandat 519.058 kb on - strandat 519.058 kb on - strandat 519.058 kb on - strandat 519.416 kb on + strand, within MPMX19_03219at 519.416 kb on + strand, within MPMX19_03219at 519.416 kb on + strand, within MPMX19_03219at 519.416 kb on + strand, within MPMX19_03219at 519.416 kb on + strand, within MPMX19_03219at 519.416 kb on + strand, within MPMX19_03219at 519.417 kb on - strand, within MPMX19_03219at 519.417 kb on - strand, within MPMX19_03219at 519.417 kb on - strand, within MPMX19_03219at 519.417 kb on - strand, within MPMX19_03219at 520.842 kb on + strand, within MPMX19_03220at 520.984 kb on - strand, within MPMX19_03220at 521.010 kb on + strand, within MPMX19_03220at 521.010 kb on + strand, within MPMX19_03220at 521.010 kb on + strand, within MPMX19_03220at 521.010 kb on + strand, within MPMX19_03220at 521.010 kb on + strand, within MPMX19_03220at 521.010 kb on + strand, within MPMX19_03220at 521.022 kb on + strand, within MPMX19_03220at 521.022 kb on + strand, within MPMX19_03220at 521.022 kb on + strand, within MPMX19_03220at 521.022 kb on + strand, within MPMX19_03220at 521.022 kb on + strand, within MPMX19_03220at 521.022 kb on + strand, within MPMX19_03220at 521.022 kb on + strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.023 kb on - strand, within MPMX19_03220at 521.369 kb on + strandat 521.470 kb on - strand, within MPMX19_03221at 521.470 kb on - strand, within MPMX19_03221at 521.470 kb on - strand, within MPMX19_03221at 521.470 kb on - strand, within MPMX19_03221

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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517,959 + MPMX19_03218 0.25 -1.5
517,959 + MPMX19_03218 0.25 +0.9
517,960 - MPMX19_03218 0.25 -0.4
517,960 - MPMX19_03218 0.25 -1.0
517,960 - MPMX19_03218 0.25 -0.3
518,086 + MPMX19_03218 0.36 -0.7
518,087 - MPMX19_03218 0.37 -0.0
518,087 - MPMX19_03218 0.37 +0.7
518,088 + MPMX19_03218 0.37 -0.5
518,088 + MPMX19_03218 0.37 -2.8
518,088 + MPMX19_03218 0.37 -1.6
518,089 - MPMX19_03218 0.37 -0.5
518,127 + MPMX19_03218 0.40 +0.5
518,128 - MPMX19_03218 0.40 -1.0
518,128 - MPMX19_03218 0.40 -1.3
518,128 - MPMX19_03218 0.40 +0.2
518,131 - MPMX19_03218 0.41 -1.3
518,131 - MPMX19_03218 0.41 +1.0
518,136 + MPMX19_03218 0.41 +0.7
518,137 - MPMX19_03218 0.41 -0.1
518,137 - MPMX19_03218 0.41 -2.1
518,137 - MPMX19_03218 0.41 -3.0
518,203 - MPMX19_03218 0.47 -0.5
518,284 - MPMX19_03218 0.55 -0.3
518,469 + MPMX19_03218 0.72 -2.1
518,469 + MPMX19_03218 0.72 +0.1
518,469 + MPMX19_03218 0.72 -0.5
518,469 + MPMX19_03218 0.72 +0.5
518,469 + MPMX19_03218 0.72 -1.3
518,469 + MPMX19_03218 0.72 -1.0
518,469 + MPMX19_03218 0.72 -0.8
518,469 + MPMX19_03218 0.72 -1.3
518,469 + MPMX19_03218 0.72 -0.2
518,469 + MPMX19_03218 0.72 -1.0
518,469 + MPMX19_03218 0.72 -1.0
518,469 + MPMX19_03218 0.72 +1.8
518,469 + MPMX19_03218 0.72 +1.9
518,469 + MPMX19_03218 0.72 +2.8
518,469 + MPMX19_03218 0.72 -1.3
518,469 + MPMX19_03218 0.72 +0.2
518,469 + MPMX19_03218 0.72 -1.3
518,469 + MPMX19_03218 0.72 -0.9
518,469 + MPMX19_03218 0.72 -2.0
518,469 + MPMX19_03218 0.72 -1.3
518,469 + MPMX19_03218 0.72 +0.4
518,469 + MPMX19_03218 0.72 +1.0
518,469 + MPMX19_03218 0.72 -1.0
518,469 + MPMX19_03218 0.72 +0.2
518,469 + MPMX19_03218 0.72 +0.2
518,469 + MPMX19_03218 0.72 -2.3
518,469 + MPMX19_03218 0.72 -1.0
518,469 + MPMX19_03218 0.72 -1.3
518,470 - MPMX19_03218 0.72 -1.5
518,470 - MPMX19_03218 0.72 +0.5
518,470 - MPMX19_03218 0.72 -2.7
518,470 - MPMX19_03218 0.72 -0.3
518,470 - MPMX19_03218 0.72 -1.1
518,470 - MPMX19_03218 0.72 +1.0
518,470 - MPMX19_03218 0.72 -1.8
518,470 - MPMX19_03218 0.72 -1.2
518,470 - MPMX19_03218 0.72 -2.5
518,470 - MPMX19_03218 0.72 -0.2
518,470 - MPMX19_03218 0.72 -1.0
518,470 - MPMX19_03218 0.72 -1.2
518,470 - MPMX19_03218 0.72 -0.2
518,470 - MPMX19_03218 0.72 -2.0
518,470 - MPMX19_03218 0.72 -1.3
518,470 - MPMX19_03218 0.72 -2.4
518,470 - MPMX19_03218 0.72 +0.2
518,470 - MPMX19_03218 0.72 -0.6
518,470 - MPMX19_03218 0.72 -0.1
518,470 - MPMX19_03218 0.72 +0.0
518,470 - MPMX19_03218 0.72 -0.2
518,470 - MPMX19_03218 0.72 +0.7
518,470 - MPMX19_03218 0.72 -1.0
518,470 - MPMX19_03218 0.72 -0.3
518,470 - MPMX19_03218 0.72 -1.8
518,470 - MPMX19_03218 0.72 -0.5
518,470 - MPMX19_03218 0.72 -2.1
518,470 - MPMX19_03218 0.72 -2.9
518,484 + MPMX19_03218 0.74 -1.0
518,484 + MPMX19_03218 0.74 -0.8
518,484 + MPMX19_03218 0.74 -2.3
518,485 - MPMX19_03218 0.74 -2.3
518,485 - MPMX19_03218 0.74 -1.4
518,542 - MPMX19_03218 0.79 -2.3
518,542 - MPMX19_03218 0.79 -0.1
518,769 + +0.7
518,769 + -0.8
518,769 + -1.4
518,769 + -0.2
518,769 + -1.9
518,769 + -2.0
518,769 + -0.5
518,769 + -1.3
518,770 - -0.5
518,770 - -1.1
518,770 - +0.0
518,770 - +0.8
518,770 - -1.1
518,770 - -1.3
518,770 - -0.3
518,770 - -0.7
518,789 + -0.5
518,789 + -0.3
518,819 + -1.2
518,819 + +0.0
518,819 + +1.0
518,819 + +0.3
518,819 + -1.4
518,820 - +0.5
518,820 - +0.5
518,820 - -0.2
518,820 - -0.3
518,862 + -0.5
518,862 + +0.0
518,862 + +0.6
518,862 + +0.0
518,862 + +0.0
518,863 - +0.5
518,863 - +0.8
518,863 - +0.1
518,891 + -1.4
518,891 + +0.7
518,891 + +0.6
518,892 - +2.4
518,955 + -0.7
518,955 + -1.3
518,955 + -0.4
518,955 + -0.7
518,956 - -0.4
519,057 + -0.8
519,057 + -2.1
519,057 + -0.1
519,057 + +0.6
519,057 + -2.6
519,058 - -0.5
519,058 - -0.2
519,058 - -0.5
519,058 - +0.6
519,416 + MPMX19_03219 0.29 -0.5
519,416 + MPMX19_03219 0.29 -1.6
519,416 + MPMX19_03219 0.29 +0.0
519,416 + MPMX19_03219 0.29 -0.3
519,416 + MPMX19_03219 0.29 -0.7
519,416 + MPMX19_03219 0.29 -0.5
519,417 - MPMX19_03219 0.29 +0.0
519,417 - MPMX19_03219 0.29 -2.0
519,417 - MPMX19_03219 0.29 -1.7
519,417 - MPMX19_03219 0.29 -2.3
520,842 + MPMX19_03220 0.26 -1.5
520,984 - MPMX19_03220 0.49 +0.4
521,010 + MPMX19_03220 0.53 +0.5
521,010 + MPMX19_03220 0.53 +0.0
521,010 + MPMX19_03220 0.53 +0.6
521,010 + MPMX19_03220 0.53 -0.5
521,010 + MPMX19_03220 0.53 -0.8
521,010 + MPMX19_03220 0.53 +0.5
521,022 + MPMX19_03220 0.54 -0.4
521,022 + MPMX19_03220 0.54 -0.1
521,022 + MPMX19_03220 0.54 +0.0
521,022 + MPMX19_03220 0.54 -0.2
521,022 + MPMX19_03220 0.54 +1.3
521,022 + MPMX19_03220 0.54 -1.3
521,022 + MPMX19_03220 0.54 +1.0
521,023 - MPMX19_03220 0.55 +0.0
521,023 - MPMX19_03220 0.55 +0.6
521,023 - MPMX19_03220 0.55 -0.2
521,023 - MPMX19_03220 0.55 -0.4
521,023 - MPMX19_03220 0.55 +0.3
521,023 - MPMX19_03220 0.55 -1.0
521,023 - MPMX19_03220 0.55 +0.0
521,023 - MPMX19_03220 0.55 +1.4
521,023 - MPMX19_03220 0.55 -1.3
521,023 - MPMX19_03220 0.55 +0.3
521,023 - MPMX19_03220 0.55 -1.0
521,369 + +0.8
521,470 - MPMX19_03221 0.11 +0.5
521,470 - MPMX19_03221 0.11 -0.7
521,470 - MPMX19_03221 0.11 -0.3
521,470 - MPMX19_03221 0.11 +0.3

Or see this region's nucleotide sequence