Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03201 and MPMX19_03202 are separated by 432 nucleotides MPMX19_03202 and MPMX19_03203 are separated by 50 nucleotides MPMX19_03203 and MPMX19_03204 are separated by 175 nucleotides
MPMX19_03201: MPMX19_03201 - Sensor histidine kinase RcsC, at 495,440 to 500,074
_03201
MPMX19_03202: MPMX19_03202 - IS256 family transposase ISAli6, at 500,507 to 500,824
_03202
MPMX19_03203: MPMX19_03203 - hypothetical protein, at 500,875 to 501,909
_03203
MPMX19_03204: MPMX19_03204 - IS110 family transposase ISMno25, at 502,085 to 503,260
_03204
Position (kb) 500
501
502 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 500.028 kb on + strand at 500.028 kb on + strand at 500.028 kb on + strand at 500.028 kb on + strand at 500.029 kb on - strand at 500.029 kb on - strand at 500.029 kb on - strand at 500.029 kb on - strand at 500.123 kb on + strand at 500.123 kb on + strand at 500.123 kb on + strand at 500.123 kb on + strand at 500.123 kb on + strand at 500.123 kb on + strand at 500.123 kb on + strand at 500.123 kb on + strand at 500.123 kb on + strand at 500.123 kb on + strand at 500.123 kb on + strand at 500.123 kb on + strand at 500.123 kb on + strand at 500.123 kb on + strand at 500.124 kb on - strand at 500.124 kb on - strand at 500.170 kb on - strand at 500.256 kb on + strand at 500.277 kb on + strand at 500.287 kb on + strand at 500.296 kb on + strand at 500.296 kb on + strand at 500.296 kb on + strand at 500.296 kb on + strand at 500.297 kb on - strand at 500.297 kb on - strand at 500.297 kb on - strand at 500.298 kb on + strand at 500.298 kb on + strand at 500.298 kb on + strand at 500.298 kb on + strand at 500.298 kb on + strand at 500.298 kb on + strand at 500.298 kb on + strand at 500.298 kb on + strand at 500.298 kb on + strand at 500.298 kb on + strand at 500.299 kb on - strand at 500.299 kb on - strand at 500.299 kb on - strand at 500.299 kb on - strand at 500.299 kb on - strand at 500.299 kb on - strand at 500.299 kb on - strand at 500.299 kb on - strand at 500.299 kb on - strand at 500.299 kb on - strand at 500.299 kb on - strand at 500.306 kb on + strand at 500.306 kb on + strand at 500.306 kb on + strand at 500.307 kb on - strand at 500.307 kb on - strand at 500.368 kb on + strand at 500.368 kb on + strand at 500.368 kb on + strand at 500.368 kb on + strand at 500.368 kb on + strand at 500.368 kb on + strand at 500.368 kb on + strand at 500.368 kb on + strand at 500.368 kb on + strand at 500.369 kb on - strand at 500.369 kb on - strand at 500.369 kb on - strand at 500.413 kb on - strand at 500.413 kb on - strand at 500.417 kb on + strand at 500.418 kb on - strand at 500.418 kb on - strand at 500.462 kb on + strand at 500.463 kb on - strand at 500.754 kb on - strand, within MPMX19_03202 at 500.754 kb on - strand, within MPMX19_03202 at 500.822 kb on + strand at 500.823 kb on - strand at 500.823 kb on - strand at 500.823 kb on - strand at 500.974 kb on + strand at 500.975 kb on - strand at 500.995 kb on + strand, within MPMX19_03203 at 500.995 kb on + strand, within MPMX19_03203 at 500.995 kb on + strand, within MPMX19_03203 at 500.995 kb on + strand, within MPMX19_03203 at 500.995 kb on + strand, within MPMX19_03203 at 500.995 kb on + strand, within MPMX19_03203 at 500.995 kb on + strand, within MPMX19_03203 at 500.996 kb on - strand, within MPMX19_03203 at 500.996 kb on - strand, within MPMX19_03203 at 500.996 kb on - strand, within MPMX19_03203 at 500.996 kb on - strand, within MPMX19_03203 at 500.996 kb on - strand, within MPMX19_03203 at 500.996 kb on - strand, within MPMX19_03203 at 500.996 kb on - strand, within MPMX19_03203 at 500.996 kb on - strand, within MPMX19_03203 at 500.996 kb on - strand, within MPMX19_03203 at 500.996 kb on - strand, within MPMX19_03203 at 500.996 kb on - strand, within MPMX19_03203 at 500.996 kb on - strand, within MPMX19_03203 at 501.168 kb on + strand, within MPMX19_03203 at 501.169 kb on - strand, within MPMX19_03203 at 501.169 kb on - strand, within MPMX19_03203 at 501.448 kb on + strand, within MPMX19_03203 at 501.448 kb on + strand, within MPMX19_03203 at 501.448 kb on + strand, within MPMX19_03203 at 501.448 kb on + strand, within MPMX19_03203 at 501.448 kb on + strand, within MPMX19_03203 at 501.546 kb on + strand, within MPMX19_03203 at 501.548 kb on + strand, within MPMX19_03203 at 501.548 kb on + strand, within MPMX19_03203 at 501.549 kb on - strand, within MPMX19_03203 at 501.549 kb on - strand, within MPMX19_03203 at 501.570 kb on + strand, within MPMX19_03203 at 501.634 kb on + strand, within MPMX19_03203 at 501.634 kb on + strand, within MPMX19_03203 at 501.634 kb on + strand, within MPMX19_03203 at 501.634 kb on + strand, within MPMX19_03203 at 501.634 kb on + strand, within MPMX19_03203 at 501.634 kb on + strand, within MPMX19_03203 at 501.634 kb on + strand, within MPMX19_03203 at 501.634 kb on + strand, within MPMX19_03203 at 501.634 kb on + strand, within MPMX19_03203 at 501.635 kb on - strand, within MPMX19_03203 at 501.635 kb on - strand, within MPMX19_03203 at 501.635 kb on - strand, within MPMX19_03203 at 501.635 kb on - strand, within MPMX19_03203 at 501.635 kb on - strand, within MPMX19_03203 at 501.636 kb on + strand, within MPMX19_03203 at 501.636 kb on + strand, within MPMX19_03203 at 501.636 kb on + strand, within MPMX19_03203 at 501.636 kb on + strand, within MPMX19_03203 at 501.636 kb on + strand, within MPMX19_03203 at 501.637 kb on - strand, within MPMX19_03203 at 501.637 kb on - strand, within MPMX19_03203 at 501.637 kb on - strand, within MPMX19_03203 at 501.647 kb on + strand, within MPMX19_03203 at 501.648 kb on - strand, within MPMX19_03203 at 501.907 kb on + strand at 501.907 kb on + strand at 501.907 kb on + strand at 501.907 kb on + strand at 501.907 kb on + strand at 501.907 kb on + strand at 501.908 kb on - strand at 501.908 kb on - strand at 501.908 kb on - strand at 501.930 kb on - strand at 501.981 kb on + strand at 501.981 kb on + strand at 501.981 kb on + strand at 501.982 kb on - strand at 501.982 kb on - strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.011 kb on + strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.012 kb on - strand at 502.013 kb on + strand at 502.014 kb on - strand at 502.014 kb on - strand at 502.058 kb on + strand at 502.086 kb on + strand at 502.086 kb on + strand at 502.087 kb on - strand at 502.087 kb on - strand at 502.087 kb on - strand at 502.087 kb on - strand at 502.087 kb on - strand at 502.087 kb on - strand at 502.331 kb on + strand, within MPMX19_03204 at 502.390 kb on - strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.498 kb on + strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.499 kb on - strand, within MPMX19_03204 at 502.546 kb on + strand, within MPMX19_03204 at 502.546 kb on + strand, within MPMX19_03204 at 502.546 kb on + strand, within MPMX19_03204 at 502.547 kb on - strand, within MPMX19_03204 at 502.547 kb on - strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.598 kb on + strand, within MPMX19_03204 at 502.599 kb on - strand, within MPMX19_03204 at 502.599 kb on - strand, within MPMX19_03204 at 502.599 kb on - strand, within MPMX19_03204 at 502.599 kb on - strand, within MPMX19_03204 at 502.600 kb on + strand, within MPMX19_03204 at 502.600 kb on + strand, within MPMX19_03204 at 502.601 kb on - strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.658 kb on + strand, within MPMX19_03204 at 502.659 kb on - strand, within MPMX19_03204 at 502.659 kb on - strand, within MPMX19_03204 at 502.659 kb on - strand, within MPMX19_03204 at 502.659 kb on - strand, within MPMX19_03204 at 502.745 kb on + strand, within MPMX19_03204 at 502.894 kb on + strand, within MPMX19_03204
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 500,028 + -0.8 500,028 + -0.2 500,028 + -0.9 500,028 + +0.1 500,029 - +0.6 500,029 - +0.2 500,029 - +0.8 500,029 - -1.0 500,123 + -1.0 500,123 + -1.9 500,123 + +0.6 500,123 + +1.0 500,123 + +0.7 500,123 + -1.7 500,123 + -1.3 500,123 + +0.0 500,123 + -1.3 500,123 + +0.0 500,123 + -0.8 500,123 + -0.4 500,123 + +2.4 500,123 + +0.0 500,124 - -0.1 500,124 - -0.0 500,170 - -0.6 500,256 + -0.3 500,277 + +0.3 500,287 + +1.4 500,296 + -0.8 500,296 + -1.8 500,296 + -0.7 500,296 + -2.1 500,297 - +1.0 500,297 - +0.7 500,297 - +0.0 500,298 + -1.3 500,298 + -0.7 500,298 + +0.0 500,298 + -0.6 500,298 + -0.2 500,298 + -0.8 500,298 + -0.6 500,298 + -0.5 500,298 + -2.7 500,298 + -0.0 500,299 - +0.0 500,299 - -0.8 500,299 - -0.3 500,299 - -0.3 500,299 - -0.8 500,299 - -0.6 500,299 - -0.7 500,299 - +0.2 500,299 - -0.2 500,299 - +0.3 500,299 - +0.0 500,306 + -0.6 500,306 + +1.0 500,306 + +0.7 500,307 - -0.6 500,307 - -0.6 500,368 + -1.1 500,368 + -0.4 500,368 + +0.8 500,368 + -1.0 500,368 + -0.3 500,368 + +0.4 500,368 + -0.3 500,368 + -0.1 500,368 + -1.0 500,369 - -0.6 500,369 - +0.0 500,369 - -0.7 500,413 - +0.0 500,413 - -0.6 500,417 + +0.4 500,418 - -1.0 500,418 - -1.8 500,462 + -0.1 500,463 - +0.2 500,754 - MPMX19_03202 0.78 +2.4 500,754 - MPMX19_03202 0.78 -0.8 500,822 + -0.6 500,823 - +1.0 500,823 - +1.0 500,823 - -1.0 500,974 + -1.3 500,975 - -1.3 500,995 + MPMX19_03203 0.12 +0.0 500,995 + MPMX19_03203 0.12 -2.8 500,995 + MPMX19_03203 0.12 -1.5 500,995 + MPMX19_03203 0.12 -0.5 500,995 + MPMX19_03203 0.12 -1.6 500,995 + MPMX19_03203 0.12 -0.8 500,995 + MPMX19_03203 0.12 -2.0 500,996 - MPMX19_03203 0.12 +0.2 500,996 - MPMX19_03203 0.12 -0.3 500,996 - MPMX19_03203 0.12 -1.3 500,996 - MPMX19_03203 0.12 -1.7 500,996 - MPMX19_03203 0.12 +1.4 500,996 - MPMX19_03203 0.12 -1.0 500,996 - MPMX19_03203 0.12 +0.0 500,996 - MPMX19_03203 0.12 -0.8 500,996 - MPMX19_03203 0.12 -1.0 500,996 - MPMX19_03203 0.12 -1.6 500,996 - MPMX19_03203 0.12 +0.0 500,996 - MPMX19_03203 0.12 +0.6 501,168 + MPMX19_03203 0.28 -1.6 501,169 - MPMX19_03203 0.28 +0.2 501,169 - MPMX19_03203 0.28 +0.0 501,448 + MPMX19_03203 0.55 -1.0 501,448 + MPMX19_03203 0.55 +0.5 501,448 + MPMX19_03203 0.55 -0.1 501,448 + MPMX19_03203 0.55 -0.2 501,448 + MPMX19_03203 0.55 -1.0 501,546 + MPMX19_03203 0.65 +0.7 501,548 + MPMX19_03203 0.65 +0.3 501,548 + MPMX19_03203 0.65 -2.4 501,549 - MPMX19_03203 0.65 +0.7 501,549 - MPMX19_03203 0.65 +0.6 501,570 + MPMX19_03203 0.67 -0.2 501,634 + MPMX19_03203 0.73 +1.0 501,634 + MPMX19_03203 0.73 +1.2 501,634 + MPMX19_03203 0.73 -1.1 501,634 + MPMX19_03203 0.73 +0.3 501,634 + MPMX19_03203 0.73 -2.1 501,634 + MPMX19_03203 0.73 -2.0 501,634 + MPMX19_03203 0.73 -0.3 501,634 + MPMX19_03203 0.73 -1.4 501,634 + MPMX19_03203 0.73 -1.3 501,635 - MPMX19_03203 0.73 -1.1 501,635 - MPMX19_03203 0.73 -2.3 501,635 - MPMX19_03203 0.73 -0.2 501,635 - MPMX19_03203 0.73 +0.2 501,635 - MPMX19_03203 0.73 -0.2 501,636 + MPMX19_03203 0.74 -0.2 501,636 + MPMX19_03203 0.74 -2.1 501,636 + MPMX19_03203 0.74 -1.7 501,636 + MPMX19_03203 0.74 -1.3 501,636 + MPMX19_03203 0.74 -1.0 501,637 - MPMX19_03203 0.74 -0.2 501,637 - MPMX19_03203 0.74 -1.0 501,637 - MPMX19_03203 0.74 -1.5 501,647 + MPMX19_03203 0.75 +0.2 501,648 - MPMX19_03203 0.75 -0.4 501,907 + +0.0 501,907 + +0.6 501,907 + +0.5 501,907 + -1.7 501,907 + -3.4 501,907 + -0.2 501,908 - -0.2 501,908 - -1.0 501,908 - -1.1 501,930 - +0.4 501,981 + -0.8 501,981 + -1.0 501,981 + +0.0 501,982 - +1.4 501,982 - +0.4 502,011 + +0.7 502,011 + +1.0 502,011 + +0.0 502,011 + +1.3 502,011 + -0.1 502,011 + -1.0 502,011 + -1.4 502,011 + -0.7 502,011 + +0.4 502,011 + -0.6 502,011 + -0.1 502,011 + +2.0 502,011 + -1.0 502,011 + -1.8 502,011 + -1.6 502,011 + +0.4 502,011 + -1.0 502,012 - +0.0 502,012 - -0.6 502,012 - -0.3 502,012 - +0.0 502,012 - +0.0 502,012 - -0.8 502,012 - -0.4 502,012 - +0.7 502,012 - +0.3 502,012 - -0.2 502,012 - -0.3 502,012 - -0.3 502,012 - -0.9 502,013 + +0.6 502,014 - +1.2 502,014 - +0.8 502,058 + +0.3 502,086 + -0.8 502,086 + -1.8 502,087 - +0.5 502,087 - +0.6 502,087 - -0.3 502,087 - -0.5 502,087 - +0.5 502,087 - +0.0 502,331 + MPMX19_03204 0.21 -1.0 502,390 - MPMX19_03204 0.26 -0.8 502,498 + MPMX19_03204 0.35 -0.5 502,498 + MPMX19_03204 0.35 -1.3 502,498 + MPMX19_03204 0.35 +1.3 502,498 + MPMX19_03204 0.35 -1.6 502,498 + MPMX19_03204 0.35 +0.4 502,498 + MPMX19_03204 0.35 +2.0 502,498 + MPMX19_03204 0.35 +0.4 502,498 + MPMX19_03204 0.35 -1.3 502,499 - MPMX19_03204 0.35 -1.8 502,499 - MPMX19_03204 0.35 +1.6 502,499 - MPMX19_03204 0.35 +0.6 502,499 - MPMX19_03204 0.35 -1.8 502,499 - MPMX19_03204 0.35 -1.1 502,499 - MPMX19_03204 0.35 +0.0 502,546 + MPMX19_03204 0.39 -1.1 502,546 + MPMX19_03204 0.39 -1.8 502,546 + MPMX19_03204 0.39 -1.8 502,547 - MPMX19_03204 0.39 +1.0 502,547 - MPMX19_03204 0.39 -1.0 502,598 + MPMX19_03204 0.44 -1.3 502,598 + MPMX19_03204 0.44 +0.0 502,598 + MPMX19_03204 0.44 -0.8 502,598 + MPMX19_03204 0.44 -1.7 502,598 + MPMX19_03204 0.44 -1.1 502,598 + MPMX19_03204 0.44 +1.2 502,599 - MPMX19_03204 0.44 -0.1 502,599 - MPMX19_03204 0.44 -0.6 502,599 - MPMX19_03204 0.44 -0.7 502,599 - MPMX19_03204 0.44 -0.8 502,600 + MPMX19_03204 0.44 +0.2 502,600 + MPMX19_03204 0.44 +0.2 502,601 - MPMX19_03204 0.44 -0.7 502,658 + MPMX19_03204 0.49 +0.0 502,658 + MPMX19_03204 0.49 +0.0 502,658 + MPMX19_03204 0.49 -1.6 502,658 + MPMX19_03204 0.49 -1.8 502,658 + MPMX19_03204 0.49 -1.0 502,658 + MPMX19_03204 0.49 +1.0 502,658 + MPMX19_03204 0.49 -1.1 502,659 - MPMX19_03204 0.49 -1.0 502,659 - MPMX19_03204 0.49 -0.4 502,659 - MPMX19_03204 0.49 -0.3 502,659 - MPMX19_03204 0.49 +0.2 502,745 + MPMX19_03204 0.56 -2.7 502,894 + MPMX19_03204 0.69 -0.6
Or see this region's nucleotide sequence