Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02932

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02930 and MPMX19_02931 are separated by 156 nucleotidesMPMX19_02931 and MPMX19_02932 overlap by 4 nucleotidesMPMX19_02932 and MPMX19_02933 are separated by 413 nucleotides MPMX19_02930: MPMX19_02930 - hypothetical protein, at 184,641 to 185,756 _02930 MPMX19_02931: MPMX19_02931 - Linearmycin resistance ATP-binding protein LnrL, at 185,913 to 186,701 _02931 MPMX19_02932: MPMX19_02932 - hypothetical protein, at 186,698 to 187,513 _02932 MPMX19_02933: MPMX19_02933 - Methanol dehydrogenase [cytochrome c] subunit 1, at 187,927 to 189,762 _02933 Position (kb) 186 187 188Strain fitness (log2 ratio) -3 -2 -1 0 1at 185.916 kb on + strandat 185.916 kb on + strandat 185.916 kb on + strandat 185.916 kb on + strandat 185.916 kb on + strandat 185.916 kb on + strandat 185.916 kb on + strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 185.917 kb on - strandat 186.123 kb on + strand, within MPMX19_02931at 186.123 kb on + strand, within MPMX19_02931at 186.124 kb on - strand, within MPMX19_02931at 186.124 kb on - strand, within MPMX19_02931at 186.261 kb on + strand, within MPMX19_02931at 186.262 kb on - strand, within MPMX19_02931at 186.262 kb on - strand, within MPMX19_02931at 186.262 kb on - strand, within MPMX19_02931at 186.394 kb on + strand, within MPMX19_02931at 186.713 kb on + strandat 186.713 kb on + strandat 186.713 kb on + strandat 186.713 kb on + strandat 186.713 kb on + strandat 186.713 kb on + strandat 186.713 kb on + strandat 186.714 kb on - strandat 186.714 kb on - strandat 186.714 kb on - strandat 186.714 kb on - strandat 186.719 kb on + strandat 186.719 kb on + strandat 186.720 kb on - strandat 186.720 kb on - strandat 186.870 kb on - strand, within MPMX19_02932at 186.870 kb on - strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.878 kb on + strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.879 kb on - strand, within MPMX19_02932at 186.887 kb on + strand, within MPMX19_02932at 186.896 kb on + strand, within MPMX19_02932at 186.896 kb on + strand, within MPMX19_02932at 186.896 kb on + strand, within MPMX19_02932at 186.896 kb on + strand, within MPMX19_02932at 186.896 kb on + strand, within MPMX19_02932at 186.896 kb on + strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.897 kb on - strand, within MPMX19_02932at 186.965 kb on + strand, within MPMX19_02932at 186.965 kb on + strand, within MPMX19_02932at 186.965 kb on + strand, within MPMX19_02932at 186.965 kb on + strand, within MPMX19_02932at 186.965 kb on + strand, within MPMX19_02932at 186.966 kb on - strand, within MPMX19_02932at 186.966 kb on - strand, within MPMX19_02932at 186.966 kb on - strand, within MPMX19_02932at 186.966 kb on - strand, within MPMX19_02932at 186.966 kb on - strand, within MPMX19_02932at 186.966 kb on - strand, within MPMX19_02932at 186.966 kb on - strand, within MPMX19_02932at 187.022 kb on + strand, within MPMX19_02932at 187.022 kb on + strand, within MPMX19_02932at 187.022 kb on + strand, within MPMX19_02932at 187.022 kb on + strand, within MPMX19_02932at 187.022 kb on + strand, within MPMX19_02932at 187.023 kb on - strand, within MPMX19_02932at 187.023 kb on - strand, within MPMX19_02932at 187.023 kb on - strand, within MPMX19_02932at 187.023 kb on - strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.076 kb on + strand, within MPMX19_02932at 187.077 kb on - strand, within MPMX19_02932at 187.077 kb on - strand, within MPMX19_02932at 187.077 kb on - strand, within MPMX19_02932at 187.077 kb on - strand, within MPMX19_02932at 187.077 kb on - strand, within MPMX19_02932at 187.077 kb on - strand, within MPMX19_02932at 187.077 kb on - strand, within MPMX19_02932at 187.130 kb on + strand, within MPMX19_02932at 187.131 kb on - strand, within MPMX19_02932at 187.280 kb on + strand, within MPMX19_02932at 187.280 kb on + strand, within MPMX19_02932at 187.280 kb on + strand, within MPMX19_02932at 187.280 kb on + strand, within MPMX19_02932at 187.281 kb on - strand, within MPMX19_02932at 187.319 kb on + strand, within MPMX19_02932at 187.320 kb on - strand, within MPMX19_02932at 187.379 kb on + strand, within MPMX19_02932at 187.379 kb on + strand, within MPMX19_02932at 187.379 kb on + strand, within MPMX19_02932at 187.379 kb on + strand, within MPMX19_02932at 187.379 kb on + strand, within MPMX19_02932at 187.380 kb on - strand, within MPMX19_02932at 187.380 kb on - strand, within MPMX19_02932at 187.380 kb on - strand, within MPMX19_02932at 187.380 kb on - strand, within MPMX19_02932at 187.457 kb on + strandat 187.457 kb on + strandat 187.457 kb on + strandat 187.458 kb on - strandat 187.458 kb on - strandat 187.458 kb on - strandat 187.554 kb on + strandat 187.581 kb on - strandat 187.621 kb on + strandat 187.621 kb on + strandat 187.690 kb on + strandat 187.690 kb on + strandat 187.690 kb on + strandat 187.691 kb on - strandat 187.691 kb on - strandat 187.723 kb on - strandat 187.841 kb on + strandat 187.841 kb on + strandat 187.841 kb on + strandat 187.841 kb on + strandat 187.842 kb on + strandat 187.842 kb on - strandat 187.842 kb on - strandat 187.842 kb on - strandat 187.988 kb on + strandat 187.988 kb on + strandat 187.989 kb on - strandat 187.989 kb on - strandat 188.068 kb on + strandat 188.069 kb on - strandat 188.069 kb on - strandat 188.083 kb on + strandat 188.083 kb on + strandat 188.083 kb on + strandat 188.203 kb on + strand, within MPMX19_02933at 188.203 kb on + strand, within MPMX19_02933at 188.203 kb on + strand, within MPMX19_02933at 188.203 kb on + strand, within MPMX19_02933at 188.203 kb on + strand, within MPMX19_02933at 188.203 kb on + strand, within MPMX19_02933at 188.203 kb on + strand, within MPMX19_02933at 188.203 kb on + strand, within MPMX19_02933at 188.203 kb on + strand, within MPMX19_02933at 188.203 kb on + strand, within MPMX19_02933at 188.203 kb on + strand, within MPMX19_02933at 188.203 kb on + strand, within MPMX19_02933at 188.203 kb on + strand, within MPMX19_02933at 188.203 kb on + strand, within MPMX19_02933at 188.203 kb on + strand, within MPMX19_02933at 188.203 kb on + strand, within MPMX19_02933at 188.203 kb on + strand, within MPMX19_02933at 188.203 kb on + strand, within MPMX19_02933at 188.204 kb on - strand, within MPMX19_02933at 188.204 kb on - strand, within MPMX19_02933at 188.204 kb on - strand, within MPMX19_02933at 188.204 kb on - strand, within MPMX19_02933at 188.204 kb on - strand, within MPMX19_02933at 188.204 kb on - strand, within MPMX19_02933at 188.204 kb on - strand, within MPMX19_02933at 188.204 kb on - strand, within MPMX19_02933at 188.204 kb on - strand, within MPMX19_02933at 188.204 kb on - strand, within MPMX19_02933at 188.204 kb on - strand, within MPMX19_02933at 188.204 kb on - strand, within MPMX19_02933at 188.204 kb on - strand, within MPMX19_02933at 188.204 kb on - strand, within MPMX19_02933at 188.233 kb on + strand, within MPMX19_02933at 188.233 kb on + strand, within MPMX19_02933at 188.233 kb on + strand, within MPMX19_02933at 188.233 kb on + strand, within MPMX19_02933at 188.233 kb on + strand, within MPMX19_02933at 188.234 kb on - strand, within MPMX19_02933at 188.275 kb on + strand, within MPMX19_02933at 188.275 kb on + strand, within MPMX19_02933at 188.275 kb on + strand, within MPMX19_02933at 188.275 kb on + strand, within MPMX19_02933at 188.276 kb on - strand, within MPMX19_02933at 188.276 kb on - strand, within MPMX19_02933at 188.276 kb on - strand, within MPMX19_02933at 188.497 kb on + strand, within MPMX19_02933at 188.497 kb on + strand, within MPMX19_02933at 188.497 kb on + strand, within MPMX19_02933at 188.497 kb on + strand, within MPMX19_02933at 188.497 kb on + strand, within MPMX19_02933at 188.497 kb on + strand, within MPMX19_02933at 188.497 kb on + strand, within MPMX19_02933at 188.497 kb on + strand, within MPMX19_02933at 188.497 kb on + strand, within MPMX19_02933at 188.497 kb on + strand, within MPMX19_02933at 188.497 kb on + strand, within MPMX19_02933at 188.497 kb on + strand, within MPMX19_02933at 188.497 kb on + strand, within MPMX19_02933at 188.497 kb on + strand, within MPMX19_02933at 188.498 kb on - strand, within MPMX19_02933at 188.498 kb on - strand, within MPMX19_02933at 188.498 kb on - strand, within MPMX19_02933at 188.498 kb on - strand, within MPMX19_02933at 188.498 kb on - strand, within MPMX19_02933at 188.498 kb on - strand, within MPMX19_02933at 188.498 kb on - strand, within MPMX19_02933at 188.498 kb on - strand, within MPMX19_02933at 188.498 kb on - strand, within MPMX19_02933

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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185,916 + -1.4
185,916 + -0.3
185,916 + +0.9
185,916 + +1.0
185,916 + -3.2
185,916 + -0.6
185,916 + -1.5
185,917 - -0.6
185,917 - -0.0
185,917 - -1.9
185,917 - -0.0
185,917 - -1.0
185,917 - -1.5
185,917 - -0.0
185,917 - -0.0
185,917 - -1.5
185,917 - -0.8
185,917 - -1.6
185,917 - -1.5
185,917 - +0.3
185,917 - -1.0
185,917 - -1.0
186,123 + MPMX19_02931 0.27 +0.1
186,123 + MPMX19_02931 0.27 -1.4
186,124 - MPMX19_02931 0.27 -0.1
186,124 - MPMX19_02931 0.27 -0.0
186,261 + MPMX19_02931 0.44 +0.4
186,262 - MPMX19_02931 0.44 -0.0
186,262 - MPMX19_02931 0.44 +1.1
186,262 - MPMX19_02931 0.44 +0.1
186,394 + MPMX19_02931 0.61 +0.2
186,713 + +0.5
186,713 + +0.5
186,713 + +0.4
186,713 + -1.6
186,713 + +1.0
186,713 + +0.3
186,713 + -1.0
186,714 - -1.4
186,714 - -0.8
186,714 - -0.5
186,714 - +1.0
186,719 + -1.0
186,719 + -0.0
186,720 - -0.5
186,720 - +0.5
186,870 - MPMX19_02932 0.21 -2.0
186,870 - MPMX19_02932 0.21 -1.1
186,878 + MPMX19_02932 0.22 -0.8
186,878 + MPMX19_02932 0.22 -0.6
186,878 + MPMX19_02932 0.22 -0.0
186,878 + MPMX19_02932 0.22 +0.1
186,878 + MPMX19_02932 0.22 -0.6
186,878 + MPMX19_02932 0.22 -0.6
186,878 + MPMX19_02932 0.22 -1.4
186,878 + MPMX19_02932 0.22 +1.0
186,878 + MPMX19_02932 0.22 -2.2
186,878 + MPMX19_02932 0.22 -0.3
186,878 + MPMX19_02932 0.22 -0.6
186,879 - MPMX19_02932 0.22 -1.6
186,879 - MPMX19_02932 0.22 -0.6
186,879 - MPMX19_02932 0.22 -0.0
186,879 - MPMX19_02932 0.22 -2.0
186,879 - MPMX19_02932 0.22 -1.8
186,879 - MPMX19_02932 0.22 -0.8
186,879 - MPMX19_02932 0.22 -1.0
186,879 - MPMX19_02932 0.22 -0.3
186,879 - MPMX19_02932 0.22 -1.6
186,879 - MPMX19_02932 0.22 -0.0
186,879 - MPMX19_02932 0.22 +0.2
186,887 + MPMX19_02932 0.23 -0.0
186,896 + MPMX19_02932 0.24 -1.4
186,896 + MPMX19_02932 0.24 -1.0
186,896 + MPMX19_02932 0.24 -0.4
186,896 + MPMX19_02932 0.24 -1.3
186,896 + MPMX19_02932 0.24 -1.5
186,896 + MPMX19_02932 0.24 -0.4
186,897 - MPMX19_02932 0.24 -2.6
186,897 - MPMX19_02932 0.24 -0.7
186,897 - MPMX19_02932 0.24 -0.8
186,897 - MPMX19_02932 0.24 -0.4
186,897 - MPMX19_02932 0.24 -0.6
186,897 - MPMX19_02932 0.24 -1.0
186,897 - MPMX19_02932 0.24 -1.0
186,897 - MPMX19_02932 0.24 +0.5
186,897 - MPMX19_02932 0.24 -1.2
186,897 - MPMX19_02932 0.24 -2.2
186,897 - MPMX19_02932 0.24 -0.7
186,965 + MPMX19_02932 0.33 -0.4
186,965 + MPMX19_02932 0.33 +0.7
186,965 + MPMX19_02932 0.33 -0.8
186,965 + MPMX19_02932 0.33 -1.8
186,965 + MPMX19_02932 0.33 -0.8
186,966 - MPMX19_02932 0.33 -2.7
186,966 - MPMX19_02932 0.33 -0.6
186,966 - MPMX19_02932 0.33 -0.8
186,966 - MPMX19_02932 0.33 -0.4
186,966 - MPMX19_02932 0.33 -1.5
186,966 - MPMX19_02932 0.33 -2.0
186,966 - MPMX19_02932 0.33 +0.5
187,022 + MPMX19_02932 0.40 -0.9
187,022 + MPMX19_02932 0.40 -0.5
187,022 + MPMX19_02932 0.40 -0.6
187,022 + MPMX19_02932 0.40 +0.6
187,022 + MPMX19_02932 0.40 -0.0
187,023 - MPMX19_02932 0.40 -0.9
187,023 - MPMX19_02932 0.40 -1.6
187,023 - MPMX19_02932 0.40 +0.0
187,023 - MPMX19_02932 0.40 -0.0
187,076 + MPMX19_02932 0.46 -0.0
187,076 + MPMX19_02932 0.46 -0.4
187,076 + MPMX19_02932 0.46 -1.4
187,076 + MPMX19_02932 0.46 -0.0
187,076 + MPMX19_02932 0.46 +0.4
187,076 + MPMX19_02932 0.46 -1.4
187,076 + MPMX19_02932 0.46 -0.4
187,076 + MPMX19_02932 0.46 +0.5
187,076 + MPMX19_02932 0.46 -0.6
187,076 + MPMX19_02932 0.46 -1.1
187,076 + MPMX19_02932 0.46 +0.5
187,076 + MPMX19_02932 0.46 -0.0
187,077 - MPMX19_02932 0.46 -0.4
187,077 - MPMX19_02932 0.46 -0.2
187,077 - MPMX19_02932 0.46 -0.5
187,077 - MPMX19_02932 0.46 -0.0
187,077 - MPMX19_02932 0.46 -0.8
187,077 - MPMX19_02932 0.46 -0.5
187,077 - MPMX19_02932 0.46 -0.9
187,130 + MPMX19_02932 0.53 -2.4
187,131 - MPMX19_02932 0.53 -1.6
187,280 + MPMX19_02932 0.71 +1.0
187,280 + MPMX19_02932 0.71 -0.0
187,280 + MPMX19_02932 0.71 +1.3
187,280 + MPMX19_02932 0.71 +1.0
187,281 - MPMX19_02932 0.71 -0.3
187,319 + MPMX19_02932 0.76 -0.4
187,320 - MPMX19_02932 0.76 +0.5
187,379 + MPMX19_02932 0.83 -0.0
187,379 + MPMX19_02932 0.83 -0.6
187,379 + MPMX19_02932 0.83 -1.8
187,379 + MPMX19_02932 0.83 -1.6
187,379 + MPMX19_02932 0.83 -0.0
187,380 - MPMX19_02932 0.84 -0.0
187,380 - MPMX19_02932 0.84 -1.4
187,380 - MPMX19_02932 0.84 -0.3
187,380 - MPMX19_02932 0.84 -1.0
187,457 + -0.0
187,457 + -0.6
187,457 + +0.4
187,458 - -0.0
187,458 - -1.4
187,458 - -2.2
187,554 + -1.0
187,581 - -0.0
187,621 + -0.7
187,621 + +0.3
187,690 + +0.3
187,690 + -1.0
187,690 + -1.4
187,691 - -1.3
187,691 - -0.0
187,723 - -2.0
187,841 + -0.4
187,841 + -2.2
187,841 + -1.0
187,841 + -1.4
187,842 + -0.3
187,842 - +0.3
187,842 - -0.6
187,842 - -1.9
187,988 + -2.6
187,988 + -0.8
187,989 - -0.6
187,989 - -0.5
188,068 + -0.2
188,069 - -0.5
188,069 - -0.6
188,083 + -0.0
188,083 + -1.4
188,083 + +1.0
188,203 + MPMX19_02933 0.15 +0.5
188,203 + MPMX19_02933 0.15 -1.6
188,203 + MPMX19_02933 0.15 -1.0
188,203 + MPMX19_02933 0.15 -1.6
188,203 + MPMX19_02933 0.15 -1.4
188,203 + MPMX19_02933 0.15 -0.4
188,203 + MPMX19_02933 0.15 -1.4
188,203 + MPMX19_02933 0.15 -0.5
188,203 + MPMX19_02933 0.15 -2.5
188,203 + MPMX19_02933 0.15 -2.4
188,203 + MPMX19_02933 0.15 -0.6
188,203 + MPMX19_02933 0.15 -0.5
188,203 + MPMX19_02933 0.15 -0.3
188,203 + MPMX19_02933 0.15 -0.0
188,203 + MPMX19_02933 0.15 -2.2
188,203 + MPMX19_02933 0.15 -1.2
188,203 + MPMX19_02933 0.15 +1.0
188,203 + MPMX19_02933 0.15 -2.4
188,204 - MPMX19_02933 0.15 -2.8
188,204 - MPMX19_02933 0.15 +0.4
188,204 - MPMX19_02933 0.15 -0.0
188,204 - MPMX19_02933 0.15 -0.4
188,204 - MPMX19_02933 0.15 -0.2
188,204 - MPMX19_02933 0.15 -1.5
188,204 - MPMX19_02933 0.15 +0.2
188,204 - MPMX19_02933 0.15 +0.4
188,204 - MPMX19_02933 0.15 -0.0
188,204 - MPMX19_02933 0.15 -1.4
188,204 - MPMX19_02933 0.15 -1.1
188,204 - MPMX19_02933 0.15 +0.5
188,204 - MPMX19_02933 0.15 -1.4
188,204 - MPMX19_02933 0.15 -0.0
188,233 + MPMX19_02933 0.17 -0.9
188,233 + MPMX19_02933 0.17 -1.0
188,233 + MPMX19_02933 0.17 -0.6
188,233 + MPMX19_02933 0.17 -1.0
188,233 + MPMX19_02933 0.17 -1.8
188,234 - MPMX19_02933 0.17 -1.4
188,275 + MPMX19_02933 0.19 -0.0
188,275 + MPMX19_02933 0.19 -1.0
188,275 + MPMX19_02933 0.19 -1.4
188,275 + MPMX19_02933 0.19 -1.2
188,276 - MPMX19_02933 0.19 +0.2
188,276 - MPMX19_02933 0.19 -1.3
188,276 - MPMX19_02933 0.19 -1.2
188,497 + MPMX19_02933 0.31 -1.0
188,497 + MPMX19_02933 0.31 -0.2
188,497 + MPMX19_02933 0.31 -0.6
188,497 + MPMX19_02933 0.31 -0.9
188,497 + MPMX19_02933 0.31 +1.0
188,497 + MPMX19_02933 0.31 -1.8
188,497 + MPMX19_02933 0.31 -0.7
188,497 + MPMX19_02933 0.31 -1.0
188,497 + MPMX19_02933 0.31 -0.4
188,497 + MPMX19_02933 0.31 -1.0
188,497 + MPMX19_02933 0.31 -0.3
188,497 + MPMX19_02933 0.31 +0.6
188,497 + MPMX19_02933 0.31 -0.6
188,497 + MPMX19_02933 0.31 -1.0
188,498 - MPMX19_02933 0.31 +0.5
188,498 - MPMX19_02933 0.31 -0.5
188,498 - MPMX19_02933 0.31 +0.2
188,498 - MPMX19_02933 0.31 -0.3
188,498 - MPMX19_02933 0.31 -0.5
188,498 - MPMX19_02933 0.31 -1.2
188,498 - MPMX19_02933 0.31 +1.0
188,498 - MPMX19_02933 0.31 +0.0
188,498 - MPMX19_02933 0.31 -0.7

Or see this region's nucleotide sequence