Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02839 and MPMX19_02840 are separated by 59 nucleotides MPMX19_02840 and MPMX19_02841 are separated by 11 nucleotides MPMX19_02841 and MPMX19_02842 are separated by 406 nucleotides
MPMX19_02839: MPMX19_02839 - Acetyl-S-ACP:malonate ACP transferase, at 79,435 to 81,090
_02839
MPMX19_02840: MPMX19_02840 - hypothetical protein, at 81,150 to 81,914
_02840
MPMX19_02841: MPMX19_02841 - hypothetical protein, at 81,926 to 82,333
_02841
MPMX19_02842: MPMX19_02842 - HTH-type transcriptional repressor RspR, at 82,740 to 83,450
_02842
Position (kb) 81
82
83 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.025 kb on + strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.026 kb on - strand at 81.241 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.472 kb on + strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.473 kb on - strand, within MPMX19_02840 at 81.521 kb on - strand, within MPMX19_02840 at 81.521 kb on - strand, within MPMX19_02840 at 81.521 kb on - strand, within MPMX19_02840 at 81.521 kb on - strand, within MPMX19_02840 at 81.751 kb on + strand, within MPMX19_02840 at 81.751 kb on + strand, within MPMX19_02840 at 81.752 kb on - strand, within MPMX19_02840 at 81.752 kb on - strand, within MPMX19_02840 at 81.752 kb on - strand, within MPMX19_02840 at 81.927 kb on + strand at 81.928 kb on - strand at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.122 kb on + strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.123 kb on - strand, within MPMX19_02841 at 82.142 kb on - strand, within MPMX19_02841 at 82.142 kb on - strand, within MPMX19_02841 at 82.142 kb on - strand, within MPMX19_02841 at 82.169 kb on + strand, within MPMX19_02841 at 82.169 kb on + strand, within MPMX19_02841 at 82.191 kb on + strand, within MPMX19_02841 at 82.191 kb on + strand, within MPMX19_02841 at 82.191 kb on + strand, within MPMX19_02841 at 82.192 kb on - strand, within MPMX19_02841 at 82.270 kb on + strand, within MPMX19_02841 at 82.296 kb on + strand at 82.296 kb on + strand at 82.296 kb on + strand at 82.297 kb on - strand at 82.557 kb on + strand at 82.621 kb on + strand at 82.621 kb on + strand at 82.621 kb on + strand at 82.621 kb on + strand at 82.622 kb on - strand at 82.713 kb on + strand at 82.743 kb on + strand at 82.744 kb on - strand at 83.082 kb on + strand, within MPMX19_02842 at 83.082 kb on + strand, within MPMX19_02842 at 83.082 kb on + strand, within MPMX19_02842 at 83.082 kb on + strand, within MPMX19_02842 at 83.083 kb on - strand, within MPMX19_02842 at 83.083 kb on - strand, within MPMX19_02842 at 83.083 kb on - strand, within MPMX19_02842 at 83.083 kb on - strand, within MPMX19_02842 at 83.169 kb on + strand, within MPMX19_02842 at 83.170 kb on - strand, within MPMX19_02842 at 83.170 kb on - strand, within MPMX19_02842 at 83.170 kb on - strand, within MPMX19_02842 at 83.170 kb on - strand, within MPMX19_02842 at 83.170 kb on - strand, within MPMX19_02842 at 83.205 kb on + strand, within MPMX19_02842 at 83.205 kb on + strand, within MPMX19_02842 at 83.205 kb on + strand, within MPMX19_02842 at 83.205 kb on + strand, within MPMX19_02842 at 83.205 kb on + strand, within MPMX19_02842 at 83.206 kb on - strand, within MPMX19_02842 at 83.206 kb on - strand, within MPMX19_02842 at 83.206 kb on - strand, within MPMX19_02842 at 83.213 kb on + strand, within MPMX19_02842
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 81,025 + -1.3 81,025 + +0.5 81,025 + -1.8 81,025 + -0.3 81,025 + -0.6 81,025 + -0.2 81,025 + -0.4 81,025 + -0.0 81,025 + -0.6 81,026 - +1.7 81,026 - +1.2 81,026 - -1.0 81,026 - +0.2 81,026 - -0.5 81,026 - +2.1 81,026 - -0.4 81,026 - +1.7 81,026 - +0.2 81,026 - -1.5 81,026 - +1.0 81,026 - -1.0 81,026 - +2.0 81,026 - -0.9 81,026 - -0.3 81,026 - +0.4 81,241 + MPMX19_02840 0.12 +1.7 81,472 + MPMX19_02840 0.42 -1.6 81,472 + MPMX19_02840 0.42 +0.5 81,472 + MPMX19_02840 0.42 +1.5 81,472 + MPMX19_02840 0.42 -0.8 81,472 + MPMX19_02840 0.42 -0.4 81,472 + MPMX19_02840 0.42 -0.0 81,472 + MPMX19_02840 0.42 +0.2 81,472 + MPMX19_02840 0.42 -0.6 81,472 + MPMX19_02840 0.42 -1.3 81,472 + MPMX19_02840 0.42 -0.3 81,472 + MPMX19_02840 0.42 -0.4 81,472 + MPMX19_02840 0.42 +0.6 81,472 + MPMX19_02840 0.42 -1.2 81,472 + MPMX19_02840 0.42 +0.6 81,472 + MPMX19_02840 0.42 -0.7 81,472 + MPMX19_02840 0.42 -0.0 81,473 - MPMX19_02840 0.42 -0.6 81,473 - MPMX19_02840 0.42 -1.8 81,473 - MPMX19_02840 0.42 -0.4 81,473 - MPMX19_02840 0.42 -0.6 81,473 - MPMX19_02840 0.42 -1.0 81,473 - MPMX19_02840 0.42 +1.0 81,473 - MPMX19_02840 0.42 -1.2 81,473 - MPMX19_02840 0.42 -0.3 81,473 - MPMX19_02840 0.42 -1.0 81,473 - MPMX19_02840 0.42 +0.6 81,473 - MPMX19_02840 0.42 -0.2 81,521 - MPMX19_02840 0.48 -0.6 81,521 - MPMX19_02840 0.48 -0.6 81,521 - MPMX19_02840 0.48 -1.2 81,521 - MPMX19_02840 0.48 +0.2 81,751 + MPMX19_02840 0.79 -0.4 81,751 + MPMX19_02840 0.79 -1.2 81,752 - MPMX19_02840 0.79 -0.6 81,752 - MPMX19_02840 0.79 -0.6 81,752 - MPMX19_02840 0.79 +2.0 81,927 + -0.0 81,928 - +0.1 82,122 + MPMX19_02841 0.48 +1.1 82,122 + MPMX19_02841 0.48 -0.5 82,122 + MPMX19_02841 0.48 -0.3 82,122 + MPMX19_02841 0.48 -0.8 82,122 + MPMX19_02841 0.48 -0.0 82,122 + MPMX19_02841 0.48 -1.8 82,122 + MPMX19_02841 0.48 -1.0 82,122 + MPMX19_02841 0.48 -1.8 82,122 + MPMX19_02841 0.48 -0.3 82,122 + MPMX19_02841 0.48 -0.8 82,122 + MPMX19_02841 0.48 -0.6 82,122 + MPMX19_02841 0.48 -0.7 82,122 + MPMX19_02841 0.48 -1.6 82,122 + MPMX19_02841 0.48 -1.5 82,122 + MPMX19_02841 0.48 -0.8 82,122 + MPMX19_02841 0.48 -0.0 82,123 - MPMX19_02841 0.48 -0.5 82,123 - MPMX19_02841 0.48 -1.1 82,123 - MPMX19_02841 0.48 -1.3 82,123 - MPMX19_02841 0.48 -0.3 82,123 - MPMX19_02841 0.48 -1.8 82,123 - MPMX19_02841 0.48 -1.0 82,123 - MPMX19_02841 0.48 +0.2 82,123 - MPMX19_02841 0.48 -2.0 82,123 - MPMX19_02841 0.48 +0.5 82,123 - MPMX19_02841 0.48 +0.5 82,123 - MPMX19_02841 0.48 -1.8 82,123 - MPMX19_02841 0.48 -0.4 82,142 - MPMX19_02841 0.53 +1.0 82,142 - MPMX19_02841 0.53 -0.8 82,142 - MPMX19_02841 0.53 -1.0 82,169 + MPMX19_02841 0.60 -1.3 82,169 + MPMX19_02841 0.60 -0.0 82,191 + MPMX19_02841 0.65 -3.0 82,191 + MPMX19_02841 0.65 +1.0 82,191 + MPMX19_02841 0.65 -1.4 82,192 - MPMX19_02841 0.65 +0.4 82,270 + MPMX19_02841 0.84 -1.5 82,296 + -1.7 82,296 + -2.2 82,296 + -0.0 82,297 - +0.3 82,557 + +0.4 82,621 + +0.8 82,621 + -0.2 82,621 + -1.0 82,621 + +1.0 82,622 - +0.6 82,713 + +1.2 82,743 + -0.2 82,744 - -0.2 83,082 + MPMX19_02842 0.48 -1.8 83,082 + MPMX19_02842 0.48 -0.0 83,082 + MPMX19_02842 0.48 -0.0 83,082 + MPMX19_02842 0.48 -0.2 83,083 - MPMX19_02842 0.48 -0.5 83,083 - MPMX19_02842 0.48 +1.0 83,083 - MPMX19_02842 0.48 +1.6 83,083 - MPMX19_02842 0.48 -0.6 83,169 + MPMX19_02842 0.60 -0.6 83,170 - MPMX19_02842 0.60 -0.4 83,170 - MPMX19_02842 0.60 -1.3 83,170 - MPMX19_02842 0.60 -1.7 83,170 - MPMX19_02842 0.60 -1.3 83,170 - MPMX19_02842 0.60 -1.2 83,205 + MPMX19_02842 0.65 -0.3 83,205 + MPMX19_02842 0.65 -0.6 83,205 + MPMX19_02842 0.65 -0.0 83,205 + MPMX19_02842 0.65 -0.6 83,205 + MPMX19_02842 0.65 -2.0 83,206 - MPMX19_02842 0.66 -0.0 83,206 - MPMX19_02842 0.66 -0.3 83,206 - MPMX19_02842 0.66 -0.8 83,213 + MPMX19_02842 0.67 -0.3
Or see this region's nucleotide sequence