Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01853 and MPMX19_01854 are separated by 4 nucleotides MPMX19_01854 and MPMX19_01855 are separated by 221 nucleotides MPMX19_01855 and MPMX19_01856 are separated by 119 nucleotides MPMX19_01856 and MPMX19_01857 are separated by 158 nucleotides
MPMX19_01853: MPMX19_01853 - hypothetical protein, at 1,931,381 to 1,932,436
_01853
MPMX19_01854: MPMX19_01854 - hypothetical protein, at 1,932,441 to 1,933,085
_01854
MPMX19_01855: MPMX19_01855 - putative intracellular septation protein A, at 1,933,307 to 1,933,873
_01855
MPMX19_01856: MPMX19_01856 - Sec-independent protein translocase protein TatA, at 1,933,993 to 1,934,301
_01856
MPMX19_01857: MPMX19_01857 - hypothetical protein, at 1,934,460 to 1,935,614
_01857
Position (kb) 1933
1934 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1932.329 kb on + strand, within MPMX19_01853 at 1932.338 kb on + strand at 1932.338 kb on + strand at 1932.350 kb on + strand at 1932.350 kb on + strand at 1932.351 kb on - strand at 1932.351 kb on - strand at 1932.404 kb on + strand at 1932.404 kb on + strand at 1932.404 kb on + strand at 1932.404 kb on + strand at 1932.404 kb on + strand at 1932.404 kb on + strand at 1932.404 kb on + strand at 1932.405 kb on - strand at 1932.405 kb on - strand at 1932.405 kb on - strand at 1932.841 kb on + strand, within MPMX19_01854 at 1932.841 kb on + strand, within MPMX19_01854 at 1932.841 kb on + strand, within MPMX19_01854 at 1932.841 kb on + strand, within MPMX19_01854 at 1932.841 kb on + strand, within MPMX19_01854 at 1932.841 kb on + strand, within MPMX19_01854 at 1932.842 kb on - strand, within MPMX19_01854 at 1932.842 kb on - strand, within MPMX19_01854 at 1932.842 kb on - strand, within MPMX19_01854 at 1932.842 kb on - strand, within MPMX19_01854 at 1932.842 kb on - strand, within MPMX19_01854 at 1932.842 kb on - strand, within MPMX19_01854 at 1932.842 kb on - strand, within MPMX19_01854 at 1932.844 kb on + strand, within MPMX19_01854 at 1932.844 kb on + strand, within MPMX19_01854 at 1932.844 kb on + strand, within MPMX19_01854 at 1932.844 kb on + strand, within MPMX19_01854 at 1932.845 kb on - strand, within MPMX19_01854 at 1932.845 kb on - strand, within MPMX19_01854 at 1932.845 kb on - strand, within MPMX19_01854 at 1932.845 kb on - strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.949 kb on + strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1932.950 kb on - strand, within MPMX19_01854 at 1933.138 kb on + strand at 1933.139 kb on - strand at 1933.209 kb on + strand at 1933.209 kb on + strand at 1933.209 kb on + strand at 1933.209 kb on + strand at 1933.209 kb on + strand at 1933.209 kb on + strand at 1933.209 kb on + strand at 1933.209 kb on + strand at 1933.209 kb on - strand at 1933.210 kb on - strand at 1933.210 kb on - strand at 1933.210 kb on - strand at 1933.210 kb on - strand at 1933.218 kb on + strand at 1933.218 kb on + strand at 1933.218 kb on + strand at 1933.218 kb on + strand at 1933.218 kb on + strand at 1933.219 kb on - strand at 1933.219 kb on - strand at 1933.219 kb on - strand at 1933.294 kb on + strand at 1933.294 kb on + strand at 1933.294 kb on + strand at 1933.294 kb on + strand at 1933.294 kb on + strand at 1933.295 kb on - strand at 1933.295 kb on - strand at 1933.295 kb on - strand at 1933.295 kb on - strand at 1933.295 kb on - strand at 1933.295 kb on - strand at 1933.984 kb on + strand at 1933.984 kb on + strand at 1933.984 kb on + strand at 1933.984 kb on + strand at 1933.984 kb on + strand at 1933.984 kb on + strand at 1933.984 kb on + strand at 1933.984 kb on + strand at 1933.984 kb on + strand at 1933.984 kb on + strand at 1933.984 kb on + strand at 1933.985 kb on - strand at 1933.985 kb on - strand at 1933.985 kb on - strand at 1933.985 kb on - strand at 1933.985 kb on - strand at 1933.985 kb on - strand at 1933.985 kb on - strand at 1933.985 kb on - strand at 1933.985 kb on - strand at 1934.368 kb on + strand at 1934.368 kb on + strand at 1934.368 kb on + strand at 1934.368 kb on + strand at 1934.368 kb on + strand at 1934.368 kb on + strand at 1934.368 kb on + strand at 1934.369 kb on - strand at 1934.369 kb on - strand at 1934.369 kb on - strand at 1934.369 kb on - strand at 1934.369 kb on - strand at 1934.369 kb on - strand at 1934.502 kb on + strand at 1934.502 kb on + strand at 1934.502 kb on + strand at 1934.664 kb on + strand, within MPMX19_01857 at 1934.664 kb on + strand, within MPMX19_01857 at 1934.664 kb on + strand, within MPMX19_01857 at 1934.664 kb on + strand, within MPMX19_01857 at 1934.664 kb on + strand, within MPMX19_01857 at 1934.664 kb on + strand, within MPMX19_01857 at 1934.665 kb on - strand, within MPMX19_01857 at 1934.665 kb on - strand, within MPMX19_01857 at 1934.665 kb on - strand, within MPMX19_01857 at 1934.665 kb on - strand, within MPMX19_01857 at 1934.665 kb on - strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.760 kb on + strand, within MPMX19_01857 at 1934.761 kb on - strand, within MPMX19_01857 at 1934.761 kb on - strand, within MPMX19_01857 at 1934.761 kb on - strand, within MPMX19_01857 at 1934.761 kb on - strand, within MPMX19_01857 at 1934.761 kb on - strand, within MPMX19_01857 at 1934.761 kb on - strand, within MPMX19_01857 at 1934.761 kb on - strand, within MPMX19_01857 at 1934.761 kb on - strand, within MPMX19_01857 at 1934.761 kb on - strand, within MPMX19_01857 at 1934.761 kb on - strand, within MPMX19_01857 at 1934.761 kb on - strand, within MPMX19_01857
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 1,932,329 + MPMX19_01853 0.90 -1.1 1,932,338 + -0.4 1,932,338 + -1.3 1,932,350 + +0.5 1,932,350 + -1.9 1,932,351 - -0.3 1,932,351 - -1.5 1,932,404 + -3.1 1,932,404 + -1.3 1,932,404 + -1.5 1,932,404 + -0.4 1,932,404 + -0.5 1,932,404 + -1.8 1,932,404 + -1.0 1,932,405 - +0.5 1,932,405 - -0.5 1,932,405 - +0.0 1,932,841 + MPMX19_01854 0.62 -0.9 1,932,841 + MPMX19_01854 0.62 +0.2 1,932,841 + MPMX19_01854 0.62 -1.3 1,932,841 + MPMX19_01854 0.62 +0.0 1,932,841 + MPMX19_01854 0.62 -1.5 1,932,841 + MPMX19_01854 0.62 -1.3 1,932,842 - MPMX19_01854 0.62 -1.0 1,932,842 - MPMX19_01854 0.62 -1.0 1,932,842 - MPMX19_01854 0.62 -2.4 1,932,842 - MPMX19_01854 0.62 -1.8 1,932,842 - MPMX19_01854 0.62 -1.8 1,932,842 - MPMX19_01854 0.62 -1.5 1,932,842 - MPMX19_01854 0.62 -1.0 1,932,844 + MPMX19_01854 0.62 -1.5 1,932,844 + MPMX19_01854 0.62 -1.0 1,932,844 + MPMX19_01854 0.62 +0.5 1,932,844 + MPMX19_01854 0.62 -0.7 1,932,845 - MPMX19_01854 0.63 -1.7 1,932,845 - MPMX19_01854 0.63 +1.0 1,932,845 - MPMX19_01854 0.63 -1.5 1,932,845 - MPMX19_01854 0.63 -1.3 1,932,949 + MPMX19_01854 0.79 -1.7 1,932,949 + MPMX19_01854 0.79 +0.5 1,932,949 + MPMX19_01854 0.79 -0.5 1,932,949 + MPMX19_01854 0.79 +1.0 1,932,949 + MPMX19_01854 0.79 -1.5 1,932,949 + MPMX19_01854 0.79 -2.1 1,932,949 + MPMX19_01854 0.79 -1.3 1,932,949 + MPMX19_01854 0.79 -2.0 1,932,949 + MPMX19_01854 0.79 -0.8 1,932,949 + MPMX19_01854 0.79 -1.0 1,932,949 + MPMX19_01854 0.79 -0.4 1,932,949 + MPMX19_01854 0.79 -2.7 1,932,949 + MPMX19_01854 0.79 -0.4 1,932,949 + MPMX19_01854 0.79 -1.0 1,932,949 + MPMX19_01854 0.79 -1.7 1,932,949 + MPMX19_01854 0.79 -0.5 1,932,949 + MPMX19_01854 0.79 -0.5 1,932,949 + MPMX19_01854 0.79 -2.0 1,932,949 + MPMX19_01854 0.79 -2.0 1,932,949 + MPMX19_01854 0.79 -1.8 1,932,949 + MPMX19_01854 0.79 -0.5 1,932,949 + MPMX19_01854 0.79 -0.4 1,932,949 + MPMX19_01854 0.79 -1.5 1,932,949 + MPMX19_01854 0.79 +0.0 1,932,949 + MPMX19_01854 0.79 -2.5 1,932,949 + MPMX19_01854 0.79 +0.0 1,932,949 + MPMX19_01854 0.79 -0.3 1,932,949 + MPMX19_01854 0.79 -1.0 1,932,950 - MPMX19_01854 0.79 +0.5 1,932,950 - MPMX19_01854 0.79 +0.0 1,932,950 - MPMX19_01854 0.79 -1.1 1,932,950 - MPMX19_01854 0.79 -0.8 1,932,950 - MPMX19_01854 0.79 -0.5 1,932,950 - MPMX19_01854 0.79 -1.3 1,932,950 - MPMX19_01854 0.79 -0.5 1,932,950 - MPMX19_01854 0.79 -1.0 1,932,950 - MPMX19_01854 0.79 -0.2 1,932,950 - MPMX19_01854 0.79 +2.0 1,932,950 - MPMX19_01854 0.79 -1.0 1,932,950 - MPMX19_01854 0.79 +1.0 1,932,950 - MPMX19_01854 0.79 -1.0 1,932,950 - MPMX19_01854 0.79 -0.5 1,932,950 - MPMX19_01854 0.79 -1.8 1,932,950 - MPMX19_01854 0.79 -2.0 1,932,950 - MPMX19_01854 0.79 -0.8 1,932,950 - MPMX19_01854 0.79 +1.0 1,932,950 - MPMX19_01854 0.79 -1.0 1,932,950 - MPMX19_01854 0.79 +0.3 1,932,950 - MPMX19_01854 0.79 -0.5 1,932,950 - MPMX19_01854 0.79 -1.3 1,932,950 - MPMX19_01854 0.79 -1.5 1,932,950 - MPMX19_01854 0.79 -2.3 1,932,950 - MPMX19_01854 0.79 -0.3 1,932,950 - MPMX19_01854 0.79 +0.6 1,932,950 - MPMX19_01854 0.79 +0.0 1,932,950 - MPMX19_01854 0.79 -1.5 1,932,950 - MPMX19_01854 0.79 +0.0 1,932,950 - MPMX19_01854 0.79 -0.5 1,932,950 - MPMX19_01854 0.79 -1.8 1,932,950 - MPMX19_01854 0.79 +1.0 1,932,950 - MPMX19_01854 0.79 -0.4 1,932,950 - MPMX19_01854 0.79 -1.3 1,932,950 - MPMX19_01854 0.79 -0.3 1,933,138 + +0.0 1,933,139 - +1.0 1,933,209 + -2.1 1,933,209 + -1.0 1,933,209 + -1.8 1,933,209 + -0.2 1,933,209 + -0.2 1,933,209 + -0.5 1,933,209 + -0.1 1,933,209 + +0.5 1,933,209 - -0.2 1,933,210 - +0.5 1,933,210 - +0.3 1,933,210 - -0.7 1,933,210 - -1.9 1,933,218 + -0.2 1,933,218 + -1.7 1,933,218 + -0.5 1,933,218 + -0.5 1,933,218 + -2.5 1,933,219 - +0.3 1,933,219 - +1.0 1,933,219 - -0.2 1,933,294 + +0.0 1,933,294 + -0.8 1,933,294 + +1.3 1,933,294 + -2.0 1,933,294 + -0.4 1,933,295 - +0.0 1,933,295 - -0.5 1,933,295 - +0.5 1,933,295 - -0.4 1,933,295 - +0.0 1,933,295 - -1.3 1,933,984 + +0.5 1,933,984 + -0.1 1,933,984 + +1.6 1,933,984 + +0.5 1,933,984 + +0.2 1,933,984 + +0.1 1,933,984 + +2.6 1,933,984 + +0.2 1,933,984 + -1.3 1,933,984 + -0.5 1,933,984 + +0.0 1,933,985 - -1.5 1,933,985 - -1.4 1,933,985 - -0.7 1,933,985 - -1.4 1,933,985 - +0.2 1,933,985 - -0.3 1,933,985 - +0.6 1,933,985 - -2.0 1,933,985 - -1.0 1,934,368 + +0.8 1,934,368 + +1.0 1,934,368 + +0.5 1,934,368 + -2.1 1,934,368 + +2.4 1,934,368 + +0.3 1,934,368 + -1.3 1,934,369 - -2.3 1,934,369 - -2.0 1,934,369 - -0.3 1,934,369 - -1.5 1,934,369 - +0.7 1,934,369 - -1.5 1,934,502 + -0.4 1,934,502 + +1.5 1,934,502 + -1.5 1,934,664 + MPMX19_01857 0.18 -1.5 1,934,664 + MPMX19_01857 0.18 -0.5 1,934,664 + MPMX19_01857 0.18 -0.7 1,934,664 + MPMX19_01857 0.18 -0.5 1,934,664 + MPMX19_01857 0.18 +0.2 1,934,664 + MPMX19_01857 0.18 -0.8 1,934,665 - MPMX19_01857 0.18 +0.3 1,934,665 - MPMX19_01857 0.18 +1.0 1,934,665 - MPMX19_01857 0.18 -1.5 1,934,665 - MPMX19_01857 0.18 +0.5 1,934,665 - MPMX19_01857 0.18 -0.8 1,934,760 + MPMX19_01857 0.26 +0.1 1,934,760 + MPMX19_01857 0.26 -0.5 1,934,760 + MPMX19_01857 0.26 -0.2 1,934,760 + MPMX19_01857 0.26 +0.6 1,934,760 + MPMX19_01857 0.26 +0.9 1,934,760 + MPMX19_01857 0.26 -1.1 1,934,760 + MPMX19_01857 0.26 +0.0 1,934,760 + MPMX19_01857 0.26 -0.8 1,934,760 + MPMX19_01857 0.26 +0.0 1,934,760 + MPMX19_01857 0.26 -1.3 1,934,760 + MPMX19_01857 0.26 +0.0 1,934,760 + MPMX19_01857 0.26 -1.7 1,934,760 + MPMX19_01857 0.26 -0.4 1,934,760 + MPMX19_01857 0.26 -1.3 1,934,760 + MPMX19_01857 0.26 +0.0 1,934,760 + MPMX19_01857 0.26 -2.3 1,934,760 + MPMX19_01857 0.26 -0.3 1,934,760 + MPMX19_01857 0.26 -1.3 1,934,760 + MPMX19_01857 0.26 -0.5 1,934,760 + MPMX19_01857 0.26 -0.4 1,934,760 + MPMX19_01857 0.26 -0.8 1,934,760 + MPMX19_01857 0.26 +1.0 1,934,760 + MPMX19_01857 0.26 -0.5 1,934,760 + MPMX19_01857 0.26 -0.3 1,934,760 + MPMX19_01857 0.26 -0.4 1,934,760 + MPMX19_01857 0.26 +0.2 1,934,760 + MPMX19_01857 0.26 -1.0 1,934,760 + MPMX19_01857 0.26 -1.0 1,934,761 - MPMX19_01857 0.26 -1.0 1,934,761 - MPMX19_01857 0.26 -0.5 1,934,761 - MPMX19_01857 0.26 -1.7 1,934,761 - MPMX19_01857 0.26 -0.5 1,934,761 - MPMX19_01857 0.26 -1.8 1,934,761 - MPMX19_01857 0.26 -0.5 1,934,761 - MPMX19_01857 0.26 +0.0 1,934,761 - MPMX19_01857 0.26 -0.3 1,934,761 - MPMX19_01857 0.26 -1.0 1,934,761 - MPMX19_01857 0.26 +0.0 1,934,761 - MPMX19_01857 0.26 +3.4
Or see this region's nucleotide sequence