Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01656 and MPMX19_01657 are separated by 62 nucleotides MPMX19_01657 and MPMX19_01658 are separated by 110 nucleotides MPMX19_01658 and MPMX19_01659 are separated by 168 nucleotides MPMX19_01659 and MPMX19_01660 are separated by 114 nucleotides
MPMX19_01656: MPMX19_01656 - Co-chaperone protein HscB, at 1,738,878 to 1,739,573
_01656
MPMX19_01657: MPMX19_01657 - Ferredoxin-6, at 1,739,636 to 1,739,965
_01657
MPMX19_01658: MPMX19_01658 - tRNA-specific 2-thiouridylase MnmA, at 1,740,076 to 1,741,263
_01658
MPMX19_01659: MPMX19_01659 - tRNA-Met, at 1,741,432 to 1,741,506
_01659
MPMX19_01660: MPMX19_01660 - Response regulator PleD, at 1,741,621 to 1,742,535
_01660
Position (kb) 1740
1741
1742 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.217 kb on + strand, within MPMX19_01656 at 1739.217 kb on + strand, within MPMX19_01656 at 1739.217 kb on + strand, within MPMX19_01656 at 1739.217 kb on + strand, within MPMX19_01656 at 1739.217 kb on + strand, within MPMX19_01656 at 1739.217 kb on + strand, within MPMX19_01656 at 1739.217 kb on + strand, within MPMX19_01656 at 1739.217 kb on + strand, within MPMX19_01656 at 1739.217 kb on + strand, within MPMX19_01656 at 1739.217 kb on + strand, within MPMX19_01656 at 1739.412 kb on + strand, within MPMX19_01656 at 1739.412 kb on + strand, within MPMX19_01656 at 1739.412 kb on + strand, within MPMX19_01656 at 1739.412 kb on + strand, within MPMX19_01656 at 1739.412 kb on + strand, within MPMX19_01656 at 1739.412 kb on + strand, within MPMX19_01656 at 1739.412 kb on + strand, within MPMX19_01656 at 1739.412 kb on + strand, within MPMX19_01656 at 1739.412 kb on + strand, within MPMX19_01656 at 1739.412 kb on + strand, within MPMX19_01656 at 1739.587 kb on + strand at 1739.618 kb on + strand at 1739.618 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1741.215 kb on - strand at 1741.215 kb on - strand at 1741.274 kb on + strand at 1741.275 kb on - strand at 1741.275 kb on - strand at 1741.275 kb on - strand at 1741.275 kb on - strand at 1741.275 kb on - strand at 1741.309 kb on + strand at 1741.510 kb on + strand at 1741.510 kb on + strand at 1741.510 kb on + strand at 1741.510 kb on + strand at 1741.623 kb on - strand at 1741.623 kb on - strand at 1741.698 kb on - strand at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1742.060 kb on + strand, within MPMX19_01660 at 1742.060 kb on + strand, within MPMX19_01660 at 1742.060 kb on + strand, within MPMX19_01660 at 1742.061 kb on - strand, within MPMX19_01660 at 1742.061 kb on - strand, within MPMX19_01660 at 1742.061 kb on - strand, within MPMX19_01660 at 1742.076 kb on + strand, within MPMX19_01660 at 1742.076 kb on + strand, within MPMX19_01660
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 1,739,089 + MPMX19_01656 0.30 -0.2 1,739,089 + MPMX19_01656 0.30 +1.1 1,739,089 + MPMX19_01656 0.30 +0.8 1,739,089 + MPMX19_01656 0.30 +0.3 1,739,089 + MPMX19_01656 0.30 +1.1 1,739,089 + MPMX19_01656 0.30 -0.9 1,739,089 + MPMX19_01656 0.30 -2.7 1,739,089 + MPMX19_01656 0.30 -0.9 1,739,089 + MPMX19_01656 0.30 +1.5 1,739,089 + MPMX19_01656 0.30 -0.6 1,739,089 + MPMX19_01656 0.30 +0.6 1,739,089 + MPMX19_01656 0.30 -0.4 1,739,089 + MPMX19_01656 0.30 +2.7 1,739,089 + MPMX19_01656 0.30 +0.4 1,739,089 + MPMX19_01656 0.30 -0.5 1,739,089 + MPMX19_01656 0.30 -0.0 1,739,217 + MPMX19_01656 0.49 +0.1 1,739,217 + MPMX19_01656 0.49 -0.9 1,739,217 + MPMX19_01656 0.49 -0.5 1,739,217 + MPMX19_01656 0.49 +0.1 1,739,217 + MPMX19_01656 0.49 +0.2 1,739,217 + MPMX19_01656 0.49 -0.9 1,739,217 + MPMX19_01656 0.49 +0.6 1,739,217 + MPMX19_01656 0.49 +0.3 1,739,217 + MPMX19_01656 0.49 +0.6 1,739,217 + MPMX19_01656 0.49 -0.5 1,739,412 + MPMX19_01656 0.77 -0.9 1,739,412 + MPMX19_01656 0.77 -0.1 1,739,412 + MPMX19_01656 0.77 +1.1 1,739,412 + MPMX19_01656 0.77 +0.7 1,739,412 + MPMX19_01656 0.77 +0.2 1,739,412 + MPMX19_01656 0.77 -1.2 1,739,412 + MPMX19_01656 0.77 -0.9 1,739,412 + MPMX19_01656 0.77 -0.5 1,739,412 + MPMX19_01656 0.77 -1.0 1,739,412 + MPMX19_01656 0.77 -1.3 1,739,587 + -2.4 1,739,618 + -0.5 1,739,618 + -0.1 1,740,063 + -0.8 1,740,063 + -1.2 1,740,063 + +0.1 1,740,063 + -0.2 1,740,063 + -1.5 1,740,063 + -0.9 1,740,063 + -0.4 1,740,063 + +0.1 1,740,063 + +1.7 1,740,063 + -0.2 1,740,063 + +1.2 1,740,063 + -0.9 1,740,063 + +1.5 1,740,063 + +0.1 1,740,063 + -0.3 1,740,063 + -1.5 1,740,063 + -0.3 1,740,063 + +1.1 1,740,063 + -0.0 1,740,063 + -1.2 1,740,063 + -1.7 1,740,063 + -0.5 1,740,063 + +0.3 1,740,063 + +0.8 1,740,063 + +0.5 1,740,063 + +0.4 1,740,063 + -0.1 1,740,063 + -0.0 1,740,063 + +0.9 1,740,063 + -0.2 1,740,063 + -0.5 1,740,063 + -0.5 1,740,063 + -1.5 1,740,065 + +0.3 1,740,065 + -1.1 1,740,065 + -0.3 1,740,065 + -0.4 1,740,065 + -0.6 1,740,065 + +0.1 1,740,065 + +0.1 1,740,065 + -0.5 1,740,065 + -0.5 1,740,065 + -1.2 1,740,065 + +1.2 1,740,065 + -0.9 1,740,065 + -0.7 1,740,065 + -0.3 1,740,065 + +0.2 1,740,065 + +0.1 1,740,065 + -0.7 1,740,065 + +0.1 1,740,065 + -0.5 1,740,065 + -0.5 1,740,065 + -0.5 1,740,065 + -0.1 1,740,065 + -0.9 1,740,065 + -0.3 1,740,065 + -0.4 1,740,065 + +1.1 1,740,065 + +0.1 1,740,065 + -0.7 1,740,065 + -0.0 1,740,065 + +0.3 1,740,065 + +0.9 1,740,065 + +0.5 1,740,065 + -0.4 1,740,065 + +0.1 1,740,065 + +0.1 1,740,065 + -0.9 1,740,065 + -0.4 1,740,065 + +0.1 1,740,065 + +1.1 1,740,065 + +0.2 1,740,065 + +0.3 1,740,065 + -1.2 1,740,065 + -1.0 1,740,065 + +0.7 1,740,065 + -1.8 1,740,067 + -0.7 1,740,067 + +0.1 1,740,067 + +0.5 1,740,067 + +1.1 1,740,067 + +1.5 1,740,067 + +0.1 1,740,067 + -1.7 1,740,067 + -0.9 1,740,067 + +1.1 1,740,067 + -0.7 1,740,067 + +0.8 1,740,067 + -1.9 1,740,067 + -0.9 1,740,067 + +0.1 1,740,067 + -1.5 1,741,215 - -1.3 1,741,215 - -0.9 1,741,274 + -0.1 1,741,275 - -0.8 1,741,275 - +3.1 1,741,275 - -1.1 1,741,275 - -1.9 1,741,275 - -0.9 1,741,309 + -0.2 1,741,510 + +0.7 1,741,510 + -0.5 1,741,510 + -0.5 1,741,510 + +1.4 1,741,623 - -1.5 1,741,623 - -0.9 1,741,698 - -1.2 1,741,997 + MPMX19_01660 0.41 +0.5 1,741,997 + MPMX19_01660 0.41 -0.7 1,741,997 + MPMX19_01660 0.41 +0.1 1,741,997 + MPMX19_01660 0.41 +0.7 1,741,997 + MPMX19_01660 0.41 -0.8 1,741,997 + MPMX19_01660 0.41 -0.2 1,741,997 + MPMX19_01660 0.41 -0.5 1,741,997 + MPMX19_01660 0.41 -1.6 1,741,997 + MPMX19_01660 0.41 +1.1 1,741,997 + MPMX19_01660 0.41 -0.5 1,741,997 + MPMX19_01660 0.41 +0.7 1,741,997 + MPMX19_01660 0.41 +0.1 1,741,997 + MPMX19_01660 0.41 +0.4 1,741,997 + MPMX19_01660 0.41 -0.6 1,741,997 + MPMX19_01660 0.41 +0.1 1,741,997 + MPMX19_01660 0.41 -1.5 1,741,997 + MPMX19_01660 0.41 -1.2 1,741,997 + MPMX19_01660 0.41 +0.8 1,741,997 + MPMX19_01660 0.41 +0.0 1,741,997 + MPMX19_01660 0.41 -1.0 1,741,997 + MPMX19_01660 0.41 +0.8 1,741,997 + MPMX19_01660 0.41 -1.5 1,741,997 + MPMX19_01660 0.41 -1.7 1,741,997 + MPMX19_01660 0.41 -0.2 1,741,997 + MPMX19_01660 0.41 -0.7 1,741,997 + MPMX19_01660 0.41 -1.7 1,741,997 + MPMX19_01660 0.41 +0.1 1,741,998 - MPMX19_01660 0.41 -0.5 1,741,998 - MPMX19_01660 0.41 -1.5 1,741,998 - MPMX19_01660 0.41 -0.3 1,741,998 - MPMX19_01660 0.41 -0.8 1,741,998 - MPMX19_01660 0.41 -1.2 1,741,998 - MPMX19_01660 0.41 -0.4 1,741,998 - MPMX19_01660 0.41 -0.7 1,741,998 - MPMX19_01660 0.41 +0.1 1,741,998 - MPMX19_01660 0.41 -0.9 1,741,998 - MPMX19_01660 0.41 +0.7 1,741,998 - MPMX19_01660 0.41 +1.4 1,741,998 - MPMX19_01660 0.41 -1.3 1,741,998 - MPMX19_01660 0.41 -0.1 1,741,998 - MPMX19_01660 0.41 +0.7 1,741,998 - MPMX19_01660 0.41 +0.8 1,741,998 - MPMX19_01660 0.41 +0.9 1,741,998 - MPMX19_01660 0.41 +0.1 1,741,998 - MPMX19_01660 0.41 -0.5 1,741,998 - MPMX19_01660 0.41 +2.1 1,741,998 - MPMX19_01660 0.41 -0.5 1,741,998 - MPMX19_01660 0.41 +0.3 1,741,998 - MPMX19_01660 0.41 -0.5 1,741,998 - MPMX19_01660 0.41 -0.5 1,741,998 - MPMX19_01660 0.41 +0.3 1,742,060 + MPMX19_01660 0.48 -0.4 1,742,060 + MPMX19_01660 0.48 -0.7 1,742,060 + MPMX19_01660 0.48 -0.4 1,742,061 - MPMX19_01660 0.48 -0.5 1,742,061 - MPMX19_01660 0.48 +0.1 1,742,061 - MPMX19_01660 0.48 -0.7 1,742,076 + MPMX19_01660 0.50 +1.1 1,742,076 + MPMX19_01660 0.50 +0.8
Or see this region's nucleotide sequence