Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01375

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01372 and MPMX19_01373 are separated by 201 nucleotidesMPMX19_01373 and MPMX19_01374 are separated by 129 nucleotidesMPMX19_01374 and MPMX19_01375 overlap by 4 nucleotidesMPMX19_01375 and MPMX19_01376 are separated by 15 nucleotides MPMX19_01372: MPMX19_01372 - Membrane-bound lytic murein transglycosylase F, at 1,429,810 to 1,430,736 _01372 MPMX19_01373: MPMX19_01373 - hypothetical protein, at 1,430,938 to 1,431,273 _01373 MPMX19_01374: MPMX19_01374 - hypothetical protein, at 1,431,403 to 1,431,714 _01374 MPMX19_01375: MPMX19_01375 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, at 1,431,711 to 1,432,607 _01375 MPMX19_01376: MPMX19_01376 - hypothetical protein, at 1,432,623 to 1,436,987 _01376 Position (kb) 1431 1432 1433Strain fitness (log2 ratio) -2 -1 0 1at 1430.718 kb on + strandat 1430.794 kb on + strandat 1430.806 kb on + strandat 1430.806 kb on + strandat 1430.808 kb on + strandat 1430.808 kb on + strandat 1430.808 kb on + strandat 1430.808 kb on + strandat 1430.808 kb on + strandat 1430.809 kb on - strandat 1430.809 kb on - strandat 1430.809 kb on - strandat 1430.809 kb on - strandat 1430.809 kb on - strandat 1430.820 kb on + strandat 1430.820 kb on + strandat 1430.820 kb on + strandat 1430.821 kb on - strandat 1430.821 kb on - strandat 1430.989 kb on + strand, within MPMX19_01373at 1430.989 kb on + strand, within MPMX19_01373at 1430.989 kb on + strand, within MPMX19_01373at 1430.989 kb on + strand, within MPMX19_01373at 1430.989 kb on + strand, within MPMX19_01373at 1430.990 kb on - strand, within MPMX19_01373at 1430.990 kb on - strand, within MPMX19_01373at 1430.990 kb on - strand, within MPMX19_01373at 1430.990 kb on - strand, within MPMX19_01373at 1430.990 kb on - strand, within MPMX19_01373at 1430.990 kb on - strand, within MPMX19_01373at 1430.990 kb on - strand, within MPMX19_01373at 1430.990 kb on - strand, within MPMX19_01373at 1432.136 kb on - strand, within MPMX19_01375at 1432.482 kb on - strand, within MPMX19_01375at 1432.482 kb on - strand, within MPMX19_01375at 1432.482 kb on - strand, within MPMX19_01375at 1432.482 kb on - strand, within MPMX19_01375at 1432.639 kb on + strandat 1432.639 kb on + strandat 1432.639 kb on + strandat 1432.640 kb on - strandat 1432.766 kb on - strandat 1432.783 kb on + strandat 1432.783 kb on + strandat 1432.784 kb on - strandat 1432.784 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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1,430,718 + +0.1
1,430,794 + -0.9
1,430,806 + +1.6
1,430,806 + -0.5
1,430,808 + -0.9
1,430,808 + -1.7
1,430,808 + +0.2
1,430,808 + -1.5
1,430,808 + +1.1
1,430,809 - +0.1
1,430,809 - -0.0
1,430,809 - +0.9
1,430,809 - -0.9
1,430,809 - -1.2
1,430,820 + +1.1
1,430,820 + +0.3
1,430,820 + +1.1
1,430,821 - -2.1
1,430,821 - +0.7
1,430,989 + MPMX19_01373 0.15 +0.8
1,430,989 + MPMX19_01373 0.15 -0.3
1,430,989 + MPMX19_01373 0.15 +0.6
1,430,989 + MPMX19_01373 0.15 -0.1
1,430,989 + MPMX19_01373 0.15 +0.1
1,430,990 - MPMX19_01373 0.15 +0.2
1,430,990 - MPMX19_01373 0.15 -2.3
1,430,990 - MPMX19_01373 0.15 -0.2
1,430,990 - MPMX19_01373 0.15 -0.4
1,430,990 - MPMX19_01373 0.15 -0.4
1,430,990 - MPMX19_01373 0.15 +0.1
1,430,990 - MPMX19_01373 0.15 -0.8
1,430,990 - MPMX19_01373 0.15 -0.4
1,432,136 - MPMX19_01375 0.47 +1.1
1,432,482 - MPMX19_01375 0.86 -0.5
1,432,482 - MPMX19_01375 0.86 -0.2
1,432,482 - MPMX19_01375 0.86 +1.1
1,432,482 - MPMX19_01375 0.86 +1.3
1,432,639 + -0.9
1,432,639 + +0.1
1,432,639 + +1.1
1,432,640 - +1.1
1,432,766 - -0.5
1,432,783 + +1.1
1,432,783 + +1.1
1,432,784 - +0.1
1,432,784 - -0.9

Or see this region's nucleotide sequence