Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01265

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01264 and MPMX19_01265 are separated by 118 nucleotidesMPMX19_01265 and MPMX19_01266 are separated by 65 nucleotides MPMX19_01264: MPMX19_01264 - hypothetical protein, at 1,316,183 to 1,317,655 _01264 MPMX19_01265: MPMX19_01265 - Histidinol-phosphate aminotransferase, at 1,317,774 to 1,318,892 _01265 MPMX19_01266: MPMX19_01266 - Cobalamin biosynthesis protein CbiB, at 1,318,958 to 1,319,920 _01266 Position (kb) 1317 1318 1319Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1316.898 kb on + strand, within MPMX19_01264at 1316.898 kb on + strand, within MPMX19_01264at 1316.898 kb on + strand, within MPMX19_01264at 1316.898 kb on + strand, within MPMX19_01264at 1316.898 kb on + strand, within MPMX19_01264at 1316.898 kb on + strand, within MPMX19_01264at 1316.898 kb on + strand, within MPMX19_01264at 1316.898 kb on + strand, within MPMX19_01264at 1316.898 kb on + strand, within MPMX19_01264at 1316.898 kb on + strand, within MPMX19_01264at 1316.898 kb on + strand, within MPMX19_01264at 1316.898 kb on + strand, within MPMX19_01264at 1316.898 kb on + strand, within MPMX19_01264at 1316.898 kb on + strand, within MPMX19_01264at 1316.899 kb on - strand, within MPMX19_01264at 1316.899 kb on - strand, within MPMX19_01264at 1316.899 kb on - strand, within MPMX19_01264at 1316.899 kb on - strand, within MPMX19_01264at 1316.899 kb on - strand, within MPMX19_01264at 1316.899 kb on - strand, within MPMX19_01264at 1316.899 kb on - strand, within MPMX19_01264at 1316.899 kb on - strand, within MPMX19_01264at 1316.899 kb on - strand, within MPMX19_01264at 1316.899 kb on - strand, within MPMX19_01264at 1316.899 kb on - strand, within MPMX19_01264at 1316.899 kb on - strand, within MPMX19_01264at 1316.899 kb on - strand, within MPMX19_01264at 1316.899 kb on - strand, within MPMX19_01264at 1316.899 kb on - strand, within MPMX19_01264at 1316.899 kb on - strand, within MPMX19_01264at 1316.901 kb on + strand, within MPMX19_01264at 1316.901 kb on + strand, within MPMX19_01264at 1316.901 kb on + strand, within MPMX19_01264at 1316.901 kb on + strand, within MPMX19_01264at 1316.901 kb on + strand, within MPMX19_01264at 1316.901 kb on + strand, within MPMX19_01264at 1316.901 kb on + strand, within MPMX19_01264at 1316.902 kb on - strand, within MPMX19_01264at 1316.902 kb on - strand, within MPMX19_01264at 1316.902 kb on - strand, within MPMX19_01264at 1316.902 kb on - strand, within MPMX19_01264at 1316.902 kb on - strand, within MPMX19_01264at 1316.902 kb on - strand, within MPMX19_01264at 1316.902 kb on - strand, within MPMX19_01264at 1316.902 kb on - strand, within MPMX19_01264at 1316.902 kb on - strand, within MPMX19_01264at 1316.902 kb on - strand, within MPMX19_01264at 1316.902 kb on - strand, within MPMX19_01264at 1316.902 kb on - strand, within MPMX19_01264at 1316.902 kb on - strand, within MPMX19_01264at 1316.902 kb on - strand, within MPMX19_01264at 1317.017 kb on - strand, within MPMX19_01264at 1317.115 kb on + strand, within MPMX19_01264at 1317.115 kb on + strand, within MPMX19_01264at 1317.115 kb on + strand, within MPMX19_01264at 1317.115 kb on + strand, within MPMX19_01264at 1317.115 kb on + strand, within MPMX19_01264at 1317.115 kb on + strand, within MPMX19_01264at 1317.115 kb on + strand, within MPMX19_01264at 1317.115 kb on + strand, within MPMX19_01264at 1317.115 kb on + strand, within MPMX19_01264at 1317.115 kb on + strand, within MPMX19_01264at 1317.115 kb on + strand, within MPMX19_01264at 1317.116 kb on - strand, within MPMX19_01264at 1317.116 kb on - strand, within MPMX19_01264at 1317.116 kb on - strand, within MPMX19_01264at 1317.116 kb on - strand, within MPMX19_01264at 1317.116 kb on - strand, within MPMX19_01264at 1317.169 kb on - strand, within MPMX19_01264at 1317.169 kb on - strand, within MPMX19_01264at 1317.186 kb on + strand, within MPMX19_01264at 1317.186 kb on + strand, within MPMX19_01264at 1317.186 kb on + strand, within MPMX19_01264at 1317.186 kb on + strand, within MPMX19_01264at 1317.186 kb on + strand, within MPMX19_01264at 1317.187 kb on - strand, within MPMX19_01264at 1317.187 kb on - strand, within MPMX19_01264at 1317.187 kb on - strand, within MPMX19_01264at 1317.187 kb on - strand, within MPMX19_01264at 1317.187 kb on - strand, within MPMX19_01264at 1317.187 kb on - strand, within MPMX19_01264at 1317.187 kb on - strand, within MPMX19_01264at 1317.187 kb on - strand, within MPMX19_01264at 1317.187 kb on - strand, within MPMX19_01264at 1317.187 kb on - strand, within MPMX19_01264at 1317.187 kb on - strand, within MPMX19_01264at 1317.258 kb on + strand, within MPMX19_01264at 1317.258 kb on + strand, within MPMX19_01264at 1317.258 kb on + strand, within MPMX19_01264at 1317.259 kb on - strand, within MPMX19_01264at 1317.259 kb on - strand, within MPMX19_01264at 1317.505 kb on + strand, within MPMX19_01264at 1317.505 kb on + strand, within MPMX19_01264at 1317.505 kb on + strand, within MPMX19_01264at 1317.505 kb on + strand, within MPMX19_01264at 1317.505 kb on + strand, within MPMX19_01264at 1317.506 kb on - strand, within MPMX19_01264at 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.667 kb on + strandat 1317.668 kb on - strandat 1317.668 kb on - strandat 1317.668 kb on - strandat 1317.668 kb on - strandat 1317.668 kb on - strandat 1317.668 kb on - strandat 1317.668 kb on - strandat 1317.668 kb on - strandat 1317.668 kb on - strandat 1317.668 kb on - strandat 1317.668 kb on - strandat 1317.668 kb on - strandat 1317.668 kb on - strandat 1317.668 kb on - strandat 1317.668 kb on - strandat 1317.668 kb on - strandat 1317.668 kb on - strandat 1317.668 kb on - strandat 1317.668 kb on - strandat 1317.737 kb on + strandat 1317.737 kb on + strandat 1317.737 kb on + strandat 1317.737 kb on + strandat 1317.737 kb on + strandat 1317.737 kb on + strandat 1317.737 kb on + strandat 1317.738 kb on - strandat 1317.738 kb on - strandat 1317.738 kb on - strandat 1317.738 kb on - strandat 1317.738 kb on - strandat 1317.738 kb on - strandat 1317.738 kb on - strandat 1317.738 kb on - strandat 1317.738 kb on - strandat 1317.738 kb on - strandat 1317.738 kb on - strandat 1317.738 kb on - strandat 1317.738 kb on - strandat 1317.738 kb on - strandat 1317.738 kb on - strandat 1317.753 kb on + strandat 1317.792 kb on - strandat 1317.792 kb on - strandat 1317.792 kb on - strandat 1317.792 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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1,316,898 + MPMX19_01264 0.49 -0.7
1,316,898 + MPMX19_01264 0.49 -1.2
1,316,898 + MPMX19_01264 0.49 +0.9
1,316,898 + MPMX19_01264 0.49 +0.7
1,316,898 + MPMX19_01264 0.49 -0.8
1,316,898 + MPMX19_01264 0.49 +0.3
1,316,898 + MPMX19_01264 0.49 -0.9
1,316,898 + MPMX19_01264 0.49 -0.0
1,316,898 + MPMX19_01264 0.49 -2.1
1,316,898 + MPMX19_01264 0.49 +0.2
1,316,898 + MPMX19_01264 0.49 +1.1
1,316,898 + MPMX19_01264 0.49 +0.1
1,316,898 + MPMX19_01264 0.49 -0.9
1,316,898 + MPMX19_01264 0.49 -0.2
1,316,899 - MPMX19_01264 0.49 -0.8
1,316,899 - MPMX19_01264 0.49 +0.4
1,316,899 - MPMX19_01264 0.49 -0.9
1,316,899 - MPMX19_01264 0.49 -0.5
1,316,899 - MPMX19_01264 0.49 -1.5
1,316,899 - MPMX19_01264 0.49 +0.6
1,316,899 - MPMX19_01264 0.49 -0.2
1,316,899 - MPMX19_01264 0.49 -0.7
1,316,899 - MPMX19_01264 0.49 -0.7
1,316,899 - MPMX19_01264 0.49 -1.2
1,316,899 - MPMX19_01264 0.49 +0.3
1,316,899 - MPMX19_01264 0.49 -1.1
1,316,899 - MPMX19_01264 0.49 +0.1
1,316,899 - MPMX19_01264 0.49 -1.6
1,316,899 - MPMX19_01264 0.49 +0.3
1,316,899 - MPMX19_01264 0.49 -1.0
1,316,901 + MPMX19_01264 0.49 -2.2
1,316,901 + MPMX19_01264 0.49 +0.5
1,316,901 + MPMX19_01264 0.49 +0.3
1,316,901 + MPMX19_01264 0.49 -1.9
1,316,901 + MPMX19_01264 0.49 -0.5
1,316,901 + MPMX19_01264 0.49 +0.3
1,316,901 + MPMX19_01264 0.49 -0.5
1,316,902 - MPMX19_01264 0.49 -0.5
1,316,902 - MPMX19_01264 0.49 +0.1
1,316,902 - MPMX19_01264 0.49 -0.2
1,316,902 - MPMX19_01264 0.49 -1.3
1,316,902 - MPMX19_01264 0.49 -0.5
1,316,902 - MPMX19_01264 0.49 -0.6
1,316,902 - MPMX19_01264 0.49 -0.4
1,316,902 - MPMX19_01264 0.49 +0.5
1,316,902 - MPMX19_01264 0.49 -2.5
1,316,902 - MPMX19_01264 0.49 -0.9
1,316,902 - MPMX19_01264 0.49 -2.4
1,316,902 - MPMX19_01264 0.49 -1.8
1,316,902 - MPMX19_01264 0.49 -0.7
1,316,902 - MPMX19_01264 0.49 -3.0
1,317,017 - MPMX19_01264 0.57 -1.2
1,317,115 + MPMX19_01264 0.63 -1.5
1,317,115 + MPMX19_01264 0.63 -2.6
1,317,115 + MPMX19_01264 0.63 -0.7
1,317,115 + MPMX19_01264 0.63 -1.4
1,317,115 + MPMX19_01264 0.63 +0.1
1,317,115 + MPMX19_01264 0.63 -2.8
1,317,115 + MPMX19_01264 0.63 -0.1
1,317,115 + MPMX19_01264 0.63 -1.9
1,317,115 + MPMX19_01264 0.63 +1.3
1,317,115 + MPMX19_01264 0.63 -0.6
1,317,115 + MPMX19_01264 0.63 -1.2
1,317,116 - MPMX19_01264 0.63 -2.2
1,317,116 - MPMX19_01264 0.63 -2.0
1,317,116 - MPMX19_01264 0.63 +0.6
1,317,116 - MPMX19_01264 0.63 +0.5
1,317,116 - MPMX19_01264 0.63 +1.1
1,317,169 - MPMX19_01264 0.67 -0.3
1,317,169 - MPMX19_01264 0.67 +2.1
1,317,186 + MPMX19_01264 0.68 -1.7
1,317,186 + MPMX19_01264 0.68 +0.9
1,317,186 + MPMX19_01264 0.68 +0.3
1,317,186 + MPMX19_01264 0.68 +0.3
1,317,186 + MPMX19_01264 0.68 +0.2
1,317,187 - MPMX19_01264 0.68 +0.1
1,317,187 - MPMX19_01264 0.68 -1.3
1,317,187 - MPMX19_01264 0.68 -1.1
1,317,187 - MPMX19_01264 0.68 +0.1
1,317,187 - MPMX19_01264 0.68 -0.8
1,317,187 - MPMX19_01264 0.68 -0.1
1,317,187 - MPMX19_01264 0.68 -0.5
1,317,187 - MPMX19_01264 0.68 +1.9
1,317,187 - MPMX19_01264 0.68 -0.1
1,317,187 - MPMX19_01264 0.68 -0.1
1,317,187 - MPMX19_01264 0.68 -1.6
1,317,258 + MPMX19_01264 0.73 -1.5
1,317,258 + MPMX19_01264 0.73 -0.8
1,317,258 + MPMX19_01264 0.73 -0.7
1,317,259 - MPMX19_01264 0.73 -0.7
1,317,259 - MPMX19_01264 0.73 -1.2
1,317,505 + MPMX19_01264 0.90 +0.3
1,317,505 + MPMX19_01264 0.90 -2.9
1,317,505 + MPMX19_01264 0.90 +0.1
1,317,505 + MPMX19_01264 0.90 -2.1
1,317,505 + MPMX19_01264 0.90 -0.9
1,317,506 - MPMX19_01264 0.90 -0.2
1,317,667 + -0.7
1,317,667 + +0.7
1,317,667 + -0.2
1,317,667 + +0.4
1,317,667 + +0.1
1,317,667 + -0.9
1,317,667 + -1.5
1,317,667 + +0.7
1,317,667 + -1.2
1,317,667 + +0.1
1,317,667 + -0.1
1,317,667 + +0.7
1,317,667 + -0.2
1,317,667 + -1.5
1,317,667 + -2.1
1,317,667 + +0.5
1,317,667 + -0.5
1,317,667 + -0.2
1,317,667 + -0.9
1,317,667 + -2.4
1,317,667 + -2.1
1,317,667 + +0.2
1,317,667 + -0.9
1,317,667 + -0.9
1,317,668 - +0.9
1,317,668 - +1.1
1,317,668 - +0.9
1,317,668 - +1.2
1,317,668 - -1.9
1,317,668 - +0.2
1,317,668 - -1.5
1,317,668 - -0.2
1,317,668 - +0.5
1,317,668 - -1.5
1,317,668 - -0.9
1,317,668 - +0.3
1,317,668 - +1.1
1,317,668 - -0.1
1,317,668 - -0.2
1,317,668 - +0.1
1,317,668 - +0.1
1,317,668 - +0.3
1,317,668 - +2.1
1,317,737 + -0.9
1,317,737 + -1.5
1,317,737 + +0.3
1,317,737 + +0.8
1,317,737 + -1.3
1,317,737 + -1.1
1,317,737 + -2.2
1,317,738 - -1.9
1,317,738 - -0.2
1,317,738 - +0.2
1,317,738 - -0.7
1,317,738 - -0.5
1,317,738 - -0.0
1,317,738 - +1.5
1,317,738 - +0.1
1,317,738 - -0.3
1,317,738 - -0.3
1,317,738 - +0.7
1,317,738 - -0.5
1,317,738 - +2.1
1,317,738 - -1.2
1,317,738 - -0.9
1,317,753 + +0.4
1,317,792 - -1.2
1,317,792 - +0.8
1,317,792 - +0.5
1,317,792 - +0.1

Or see this region's nucleotide sequence