Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00784

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00782 and MPMX19_00783 are separated by 22 nucleotidesMPMX19_00783 and MPMX19_00784 are separated by 19 nucleotidesMPMX19_00784 and MPMX19_00785 are separated by 485 nucleotides MPMX19_00782: MPMX19_00782 - 3-dehydroquinate dehydratase, at 801,213 to 801,662 _00782 MPMX19_00783: MPMX19_00783 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 801,685 to 802,134 _00783 MPMX19_00784: MPMX19_00784 - Biotin carboxylase, at 802,154 to 803,494 _00784 MPMX19_00785: MPMX19_00785 - hypothetical protein, at 803,980 to 806,463 _00785 Position (kb) 802 803 804Strain fitness (log2 ratio) -2 -1 0 1at 801.174 kb on + strandat 803.653 kb on - strandat 803.744 kb on + strandat 803.826 kb on + strandat 803.835 kb on + strandat 803.835 kb on + strandat 803.835 kb on + strandat 803.836 kb on - strandat 803.836 kb on - strandat 803.836 kb on - strandat 803.836 kb on - strandat 803.836 kb on - strandat 803.836 kb on - strandat 803.856 kb on - strandat 803.856 kb on - strandat 803.856 kb on - strandat 803.856 kb on - strandat 804.106 kb on + strandat 804.256 kb on + strand, within MPMX19_00785at 804.256 kb on + strand, within MPMX19_00785at 804.256 kb on + strand, within MPMX19_00785at 804.256 kb on + strand, within MPMX19_00785at 804.256 kb on + strand, within MPMX19_00785at 804.256 kb on + strand, within MPMX19_00785at 804.256 kb on + strand, within MPMX19_00785at 804.256 kb on + strand, within MPMX19_00785at 804.256 kb on + strand, within MPMX19_00785at 804.256 kb on + strand, within MPMX19_00785at 804.256 kb on + strand, within MPMX19_00785at 804.256 kb on + strand, within MPMX19_00785at 804.256 kb on + strand, within MPMX19_00785at 804.256 kb on + strand, within MPMX19_00785at 804.256 kb on + strand, within MPMX19_00785at 804.256 kb on + strand, within MPMX19_00785at 804.257 kb on - strand, within MPMX19_00785at 804.257 kb on - strand, within MPMX19_00785at 804.257 kb on - strand, within MPMX19_00785at 804.257 kb on - strand, within MPMX19_00785at 804.257 kb on - strand, within MPMX19_00785at 804.257 kb on - strand, within MPMX19_00785at 804.257 kb on - strand, within MPMX19_00785at 804.257 kb on - strand, within MPMX19_00785at 804.257 kb on - strand, within MPMX19_00785at 804.257 kb on - strand, within MPMX19_00785at 804.257 kb on - strand, within MPMX19_00785at 804.257 kb on - strand, within MPMX19_00785at 804.257 kb on - strand, within MPMX19_00785at 804.257 kb on - strand, within MPMX19_00785at 804.367 kb on + strand, within MPMX19_00785at 804.368 kb on - strand, within MPMX19_00785at 804.368 kb on - strand, within MPMX19_00785at 804.368 kb on - strand, within MPMX19_00785at 804.368 kb on - strand, within MPMX19_00785at 804.368 kb on - strand, within MPMX19_00785

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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801,174 + -1.5
803,653 - +0.9
803,744 + +0.9
803,826 + -2.0
803,835 + +0.5
803,835 + +0.3
803,835 + -0.5
803,836 - -0.5
803,836 - -1.8
803,836 - -1.3
803,836 - +0.7
803,836 - -0.4
803,836 - +1.0
803,856 - +0.5
803,856 - -1.1
803,856 - -0.6
803,856 - -0.3
804,106 + -0.1
804,256 + MPMX19_00785 0.11 -1.4
804,256 + MPMX19_00785 0.11 +0.6
804,256 + MPMX19_00785 0.11 -1.8
804,256 + MPMX19_00785 0.11 +0.3
804,256 + MPMX19_00785 0.11 -0.2
804,256 + MPMX19_00785 0.11 +0.9
804,256 + MPMX19_00785 0.11 +0.3
804,256 + MPMX19_00785 0.11 +0.0
804,256 + MPMX19_00785 0.11 +0.9
804,256 + MPMX19_00785 0.11 -1.0
804,256 + MPMX19_00785 0.11 -1.0
804,256 + MPMX19_00785 0.11 -1.3
804,256 + MPMX19_00785 0.11 +0.2
804,256 + MPMX19_00785 0.11 +0.2
804,256 + MPMX19_00785 0.11 +0.6
804,256 + MPMX19_00785 0.11 -0.3
804,257 - MPMX19_00785 0.11 +0.0
804,257 - MPMX19_00785 0.11 +0.6
804,257 - MPMX19_00785 0.11 +0.5
804,257 - MPMX19_00785 0.11 -0.8
804,257 - MPMX19_00785 0.11 +1.2
804,257 - MPMX19_00785 0.11 +0.6
804,257 - MPMX19_00785 0.11 +1.2
804,257 - MPMX19_00785 0.11 +0.0
804,257 - MPMX19_00785 0.11 +0.2
804,257 - MPMX19_00785 0.11 -0.3
804,257 - MPMX19_00785 0.11 +1.0
804,257 - MPMX19_00785 0.11 +0.0
804,257 - MPMX19_00785 0.11 +1.2
804,257 - MPMX19_00785 0.11 -0.5
804,367 + MPMX19_00785 0.16 -0.8
804,368 - MPMX19_00785 0.16 -1.1
804,368 - MPMX19_00785 0.16 +0.0
804,368 - MPMX19_00785 0.16 -0.3
804,368 - MPMX19_00785 0.16 -1.7
804,368 - MPMX19_00785 0.16 -0.2

Or see this region's nucleotide sequence