Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06915 and MPMX19_06916 are separated by 50 nucleotides MPMX19_06916 and MPMX19_06917 are separated by 141 nucleotides MPMX19_06917 and MPMX19_06918 are separated by 115 nucleotides
MPMX19_06915: MPMX19_06915 - Putative acyl-CoA dehydrogenase FadE17, at 190,752 to 191,894
_06915
MPMX19_06916: MPMX19_06916 - Crotonyl-CoA hydratase, at 191,945 to 192,745
_06916
MPMX19_06917: MPMX19_06917 - HTH-type transcriptional regulator PgrR, at 192,887 to 193,819
_06917
MPMX19_06918: MPMX19_06918 - Esterase EstB, at 193,935 to 195,125
_06918
Position (kb) 192
193
194 Strain fitness (log2 ratio) -2
-1
0
1
2 at 192.206 kb on + strand, within MPMX19_06916 at 192.206 kb on + strand, within MPMX19_06916 at 192.206 kb on + strand, within MPMX19_06916 at 192.207 kb on - strand, within MPMX19_06916 at 192.207 kb on - strand, within MPMX19_06916 at 192.207 kb on - strand, within MPMX19_06916 at 192.207 kb on - strand, within MPMX19_06916 at 192.743 kb on + strand at 192.743 kb on + strand at 192.744 kb on - strand at 193.107 kb on + strand, within MPMX19_06917 at 193.107 kb on + strand, within MPMX19_06917 at 193.108 kb on - strand, within MPMX19_06917 at 193.251 kb on + strand, within MPMX19_06917 at 193.251 kb on + strand, within MPMX19_06917 at 193.251 kb on + strand, within MPMX19_06917 at 193.314 kb on + strand, within MPMX19_06917 at 193.315 kb on - strand, within MPMX19_06917 at 193.467 kb on + strand, within MPMX19_06917 at 193.736 kb on + strand at 193.852 kb on + strand at 193.852 kb on + strand at 193.853 kb on - strand at 193.853 kb on - strand at 193.870 kb on + strand at 193.896 kb on + strand at 193.896 kb on + strand at 193.897 kb on - strand at 193.897 kb on - strand at 193.897 kb on - strand at 193.897 kb on - strand at 193.897 kb on - strand at 193.949 kb on - strand at 194.403 kb on - strand, within MPMX19_06918 at 194.451 kb on + strand, within MPMX19_06918 at 194.451 kb on + strand, within MPMX19_06918 at 194.451 kb on + strand, within MPMX19_06918 at 194.451 kb on + strand, within MPMX19_06918 at 194.451 kb on + strand, within MPMX19_06918 at 194.452 kb on - strand, within MPMX19_06918 at 194.452 kb on - strand, within MPMX19_06918 at 194.452 kb on - strand, within MPMX19_06918 at 194.475 kb on + strand, within MPMX19_06918 at 194.625 kb on + strand, within MPMX19_06918 at 194.626 kb on - strand, within MPMX19_06918 at 194.626 kb on - strand, within MPMX19_06918 at 194.626 kb on - strand, within MPMX19_06918 at 194.626 kb on - strand, within MPMX19_06918 at 194.706 kb on + strand, within MPMX19_06918 at 194.706 kb on + strand, within MPMX19_06918
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 192,206 + MPMX19_06916 0.33 +1.1 192,206 + MPMX19_06916 0.33 +1.9 192,206 + MPMX19_06916 0.33 -0.9 192,207 - MPMX19_06916 0.33 -1.2 192,207 - MPMX19_06916 0.33 -1.4 192,207 - MPMX19_06916 0.33 -0.5 192,207 - MPMX19_06916 0.33 -1.5 192,743 + -2.6 192,743 + +1.1 192,744 - -0.6 193,107 + MPMX19_06917 0.24 -0.2 193,107 + MPMX19_06917 0.24 -1.2 193,108 - MPMX19_06917 0.24 -0.5 193,251 + MPMX19_06917 0.39 -1.5 193,251 + MPMX19_06917 0.39 -0.9 193,251 + MPMX19_06917 0.39 -2.1 193,314 + MPMX19_06917 0.46 -1.5 193,315 - MPMX19_06917 0.46 -1.2 193,467 + MPMX19_06917 0.62 -2.2 193,736 + +0.1 193,852 + -0.9 193,852 + -0.9 193,853 - -0.6 193,853 - +0.2 193,870 + +1.1 193,896 + -2.0 193,896 + -2.6 193,897 - -0.3 193,897 - +0.1 193,897 - +0.6 193,897 - -1.5 193,897 - -2.4 193,949 - -0.7 194,403 - MPMX19_06918 0.39 -0.1 194,451 + MPMX19_06918 0.43 -1.0 194,451 + MPMX19_06918 0.43 -0.4 194,451 + MPMX19_06918 0.43 +1.5 194,451 + MPMX19_06918 0.43 -1.5 194,451 + MPMX19_06918 0.43 -0.9 194,452 - MPMX19_06918 0.43 +1.1 194,452 - MPMX19_06918 0.43 +0.5 194,452 - MPMX19_06918 0.43 -1.1 194,475 + MPMX19_06918 0.45 -0.3 194,625 + MPMX19_06918 0.58 +0.3 194,626 - MPMX19_06918 0.58 -1.7 194,626 - MPMX19_06918 0.58 -0.5 194,626 - MPMX19_06918 0.58 +0.5 194,626 - MPMX19_06918 0.58 -1.3 194,706 + MPMX19_06918 0.65 -1.3 194,706 + MPMX19_06918 0.65 -0.9
Or see this region's nucleotide sequence