Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06805 and MPMX19_06806 are separated by 82 nucleotides MPMX19_06806 and MPMX19_06807 are separated by 58 nucleotides MPMX19_06807 and MPMX19_06808 are separated by 213 nucleotides
MPMX19_06805: MPMX19_06805 - hypothetical protein, at 69,755 to 70,840
_06805
MPMX19_06806: MPMX19_06806 - Decarboxylase NovR, at 70,923 to 71,693
_06806
MPMX19_06807: MPMX19_06807 - Solute-binding protein, at 71,752 to 72,792
_06807
MPMX19_06808: MPMX19_06808 - HTH-type transcriptional regulator DmlR, at 73,006 to 73,947
_06808
Position (kb) 71
72
73 Strain fitness (log2 ratio) -2
-1
0
1
2 at 70.934 kb on - strand at 70.934 kb on - strand at 70.934 kb on - strand at 70.934 kb on - strand at 70.934 kb on - strand at 70.996 kb on + strand at 70.997 kb on - strand at 71.261 kb on - strand, within MPMX19_06806 at 71.275 kb on + strand, within MPMX19_06806 at 71.290 kb on + strand, within MPMX19_06806 at 71.290 kb on + strand, within MPMX19_06806 at 71.290 kb on + strand, within MPMX19_06806 at 71.290 kb on + strand, within MPMX19_06806 at 71.291 kb on - strand, within MPMX19_06806 at 71.500 kb on + strand, within MPMX19_06806 at 71.500 kb on + strand, within MPMX19_06806 at 71.500 kb on + strand, within MPMX19_06806 at 71.501 kb on - strand, within MPMX19_06806 at 71.501 kb on - strand, within MPMX19_06806 at 71.569 kb on + strand, within MPMX19_06806 at 71.569 kb on + strand, within MPMX19_06806 at 71.569 kb on + strand, within MPMX19_06806 at 71.569 kb on + strand, within MPMX19_06806 at 71.570 kb on - strand, within MPMX19_06806 at 71.570 kb on - strand, within MPMX19_06806 at 71.570 kb on - strand, within MPMX19_06806 at 71.608 kb on + strand, within MPMX19_06806 at 71.674 kb on + strand at 71.675 kb on - strand at 71.719 kb on + strand at 71.719 kb on + strand at 71.719 kb on + strand at 71.719 kb on + strand at 71.720 kb on - strand at 71.750 kb on + strand at 71.876 kb on + strand, within MPMX19_06807 at 71.876 kb on + strand, within MPMX19_06807 at 71.876 kb on + strand, within MPMX19_06807 at 71.985 kb on + strand, within MPMX19_06807 at 71.986 kb on - strand, within MPMX19_06807 at 71.986 kb on - strand, within MPMX19_06807 at 72.371 kb on + strand, within MPMX19_06807 at 72.371 kb on + strand, within MPMX19_06807 at 72.371 kb on + strand, within MPMX19_06807 at 72.372 kb on - strand, within MPMX19_06807 at 72.372 kb on - strand, within MPMX19_06807 at 72.372 kb on - strand, within MPMX19_06807 at 72.372 kb on - strand, within MPMX19_06807 at 72.380 kb on + strand, within MPMX19_06807 at 72.380 kb on + strand, within MPMX19_06807 at 72.380 kb on + strand, within MPMX19_06807 at 72.381 kb on - strand, within MPMX19_06807 at 72.405 kb on - strand, within MPMX19_06807 at 72.405 kb on - strand, within MPMX19_06807 at 72.405 kb on - strand, within MPMX19_06807 at 72.405 kb on - strand, within MPMX19_06807 at 72.405 kb on - strand, within MPMX19_06807 at 72.500 kb on + strand, within MPMX19_06807 at 72.501 kb on - strand, within MPMX19_06807 at 72.590 kb on + strand, within MPMX19_06807 at 72.591 kb on - strand, within MPMX19_06807 at 72.757 kb on + strand at 72.757 kb on + strand at 72.758 kb on - strand at 72.758 kb on - strand at 72.758 kb on - strand at 72.758 kb on - strand at 72.758 kb on - strand at 72.796 kb on + strand at 72.796 kb on + strand at 72.796 kb on + strand at 72.797 kb on - strand at 72.797 kb on - strand at 72.797 kb on - strand at 72.797 kb on - strand at 72.797 kb on - strand at 72.797 kb on - strand at 72.883 kb on + strand at 73.007 kb on + strand at 73.007 kb on + strand at 73.007 kb on + strand at 73.007 kb on + strand at 73.007 kb on + strand at 73.007 kb on + strand at 73.007 kb on + strand at 73.008 kb on - strand at 73.008 kb on - strand at 73.008 kb on - strand at 73.008 kb on - strand at 73.166 kb on + strand, within MPMX19_06808 at 73.167 kb on - strand, within MPMX19_06808 at 73.167 kb on - strand, within MPMX19_06808 at 73.167 kb on - strand, within MPMX19_06808 at 73.433 kb on + strand, within MPMX19_06808 at 73.433 kb on + strand, within MPMX19_06808 at 73.434 kb on - strand, within MPMX19_06808 at 73.434 kb on - strand, within MPMX19_06808 at 73.651 kb on - strand, within MPMX19_06808
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 70,934 - +0.1 70,934 - -0.0 70,934 - +1.1 70,934 - -1.9 70,934 - -1.2 70,996 + +0.5 70,997 - +0.1 71,261 - MPMX19_06806 0.44 -0.9 71,275 + MPMX19_06806 0.46 -1.5 71,290 + MPMX19_06806 0.48 +0.2 71,290 + MPMX19_06806 0.48 +0.5 71,290 + MPMX19_06806 0.48 -0.7 71,290 + MPMX19_06806 0.48 -1.1 71,291 - MPMX19_06806 0.48 -0.9 71,500 + MPMX19_06806 0.75 +0.5 71,500 + MPMX19_06806 0.75 -0.5 71,500 + MPMX19_06806 0.75 -1.2 71,501 - MPMX19_06806 0.75 -1.4 71,501 - MPMX19_06806 0.75 -1.0 71,569 + MPMX19_06806 0.84 -1.3 71,569 + MPMX19_06806 0.84 -1.9 71,569 + MPMX19_06806 0.84 +0.7 71,569 + MPMX19_06806 0.84 -2.4 71,570 - MPMX19_06806 0.84 -1.1 71,570 - MPMX19_06806 0.84 +0.3 71,570 - MPMX19_06806 0.84 +0.1 71,608 + MPMX19_06806 0.89 -0.3 71,674 + -0.7 71,675 - -0.5 71,719 + -0.4 71,719 + +0.1 71,719 + -1.0 71,719 + +0.6 71,720 - +0.9 71,750 + -2.0 71,876 + MPMX19_06807 0.12 -2.2 71,876 + MPMX19_06807 0.12 +1.1 71,876 + MPMX19_06807 0.12 -1.1 71,985 + MPMX19_06807 0.22 -2.1 71,986 - MPMX19_06807 0.22 +0.6 71,986 - MPMX19_06807 0.22 +0.4 72,371 + MPMX19_06807 0.59 +0.2 72,371 + MPMX19_06807 0.59 -0.4 72,371 + MPMX19_06807 0.59 -1.2 72,372 - MPMX19_06807 0.60 -1.8 72,372 - MPMX19_06807 0.60 +1.1 72,372 - MPMX19_06807 0.60 -0.2 72,372 - MPMX19_06807 0.60 +0.1 72,380 + MPMX19_06807 0.60 -0.1 72,380 + MPMX19_06807 0.60 -0.9 72,380 + MPMX19_06807 0.60 -1.7 72,381 - MPMX19_06807 0.60 -0.2 72,405 - MPMX19_06807 0.63 -1.4 72,405 - MPMX19_06807 0.63 +0.6 72,405 - MPMX19_06807 0.63 -0.9 72,405 - MPMX19_06807 0.63 -1.6 72,405 - MPMX19_06807 0.63 -0.9 72,500 + MPMX19_06807 0.72 +0.2 72,501 - MPMX19_06807 0.72 -0.2 72,590 + MPMX19_06807 0.80 -0.9 72,591 - MPMX19_06807 0.81 +1.1 72,757 + -0.7 72,757 + -2.5 72,758 - +0.2 72,758 - +0.8 72,758 - -0.3 72,758 - -0.2 72,758 - +0.5 72,796 + -1.4 72,796 + -0.5 72,796 + -0.9 72,797 - -1.9 72,797 - +2.1 72,797 - -0.8 72,797 - -0.8 72,797 - -0.7 72,797 - -0.7 72,883 + -1.5 73,007 + -0.1 73,007 + +0.1 73,007 + -0.7 73,007 + -0.6 73,007 + -0.9 73,007 + -1.0 73,007 + +0.1 73,008 - -1.0 73,008 - -0.8 73,008 - -0.3 73,008 - +0.5 73,166 + MPMX19_06808 0.17 +0.1 73,167 - MPMX19_06808 0.17 -0.8 73,167 - MPMX19_06808 0.17 +1.7 73,167 - MPMX19_06808 0.17 -1.2 73,433 + MPMX19_06808 0.45 -1.5 73,433 + MPMX19_06808 0.45 -0.5 73,434 - MPMX19_06808 0.45 -0.2 73,434 - MPMX19_06808 0.45 -1.5 73,651 - MPMX19_06808 0.68 +0.1
Or see this region's nucleotide sequence