Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06279 and MPMX19_06280 are separated by 261 nucleotides MPMX19_06280 and MPMX19_06281 are separated by 13 nucleotides MPMX19_06281 and MPMX19_06282 are separated by 946 nucleotides
MPMX19_06279: MPMX19_06279 - L-threonine kinase, at 27,690 to 28,655
_06279
MPMX19_06280: MPMX19_06280 - Leucine-responsive regulatory protein, at 28,917 to 29,390
_06280
MPMX19_06281: MPMX19_06281 - hypothetical protein, at 29,404 to 29,859
_06281
MPMX19_06282: MPMX19_06282 - ATP-dependent RecD-like DNA helicase, at 30,806 to 33,031
_06282
Position (kb) 29
30 Strain fitness (log2 ratio) -2
-1
0
1
2 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.479 kb on + strand, within MPMX19_06279 at 28.480 kb on - strand, within MPMX19_06279 at 28.480 kb on - strand, within MPMX19_06279 at 28.480 kb on - strand, within MPMX19_06279 at 28.480 kb on - strand, within MPMX19_06279 at 28.480 kb on - strand, within MPMX19_06279 at 28.480 kb on - strand, within MPMX19_06279 at 28.480 kb on - strand, within MPMX19_06279 at 28.480 kb on - strand, within MPMX19_06279 at 28.570 kb on - strand at 28.570 kb on - strand at 28.570 kb on - strand at 28.570 kb on - strand at 28.687 kb on + strand at 28.700 kb on + strand at 28.701 kb on - strand at 28.732 kb on + strand at 28.732 kb on + strand at 28.732 kb on + strand at 28.732 kb on + strand at 28.732 kb on + strand at 28.732 kb on + strand at 28.736 kb on + strand at 28.737 kb on - strand at 28.737 kb on - strand at 28.737 kb on - strand at 28.795 kb on + strand at 28.813 kb on - strand at 29.217 kb on + strand, within MPMX19_06280 at 29.217 kb on + strand, within MPMX19_06280 at 29.217 kb on + strand, within MPMX19_06280 at 29.217 kb on + strand, within MPMX19_06280 at 29.218 kb on - strand, within MPMX19_06280 at 29.218 kb on - strand, within MPMX19_06280 at 29.218 kb on - strand, within MPMX19_06280 at 29.218 kb on - strand, within MPMX19_06280 at 29.218 kb on - strand, within MPMX19_06280 at 29.241 kb on + strand, within MPMX19_06280 at 29.241 kb on + strand, within MPMX19_06280 at 29.241 kb on + strand, within MPMX19_06280 at 29.241 kb on + strand, within MPMX19_06280 at 29.241 kb on + strand, within MPMX19_06280 at 29.241 kb on + strand, within MPMX19_06280 at 29.242 kb on - strand, within MPMX19_06280 at 29.242 kb on - strand, within MPMX19_06280 at 29.242 kb on - strand, within MPMX19_06280 at 29.242 kb on - strand, within MPMX19_06280 at 29.242 kb on - strand, within MPMX19_06280 at 29.242 kb on - strand, within MPMX19_06280 at 29.242 kb on - strand, within MPMX19_06280 at 29.242 kb on - strand, within MPMX19_06280 at 29.242 kb on - strand, within MPMX19_06280 at 29.242 kb on - strand, within MPMX19_06280 at 29.304 kb on + strand, within MPMX19_06280 at 29.304 kb on + strand, within MPMX19_06280 at 29.304 kb on + strand, within MPMX19_06280 at 29.304 kb on + strand, within MPMX19_06280 at 29.304 kb on + strand, within MPMX19_06280 at 29.305 kb on - strand, within MPMX19_06280 at 29.411 kb on + strand at 29.411 kb on + strand at 29.411 kb on + strand at 29.411 kb on + strand at 29.411 kb on + strand at 29.412 kb on - strand at 29.412 kb on - strand at 29.412 kb on - strand at 29.462 kb on + strand, within MPMX19_06281 at 29.462 kb on + strand, within MPMX19_06281 at 29.462 kb on + strand, within MPMX19_06281 at 29.463 kb on - strand, within MPMX19_06281 at 29.463 kb on - strand, within MPMX19_06281 at 29.463 kb on - strand, within MPMX19_06281 at 29.638 kb on + strand, within MPMX19_06281 at 29.800 kb on + strand, within MPMX19_06281 at 29.801 kb on - strand, within MPMX19_06281 at 29.801 kb on - strand, within MPMX19_06281 at 29.801 kb on - strand, within MPMX19_06281 at 29.890 kb on + strand at 29.890 kb on + strand at 29.891 kb on - strand at 29.891 kb on - strand at 30.000 kb on + strand at 30.000 kb on + strand at 30.000 kb on + strand at 30.000 kb on + strand at 30.213 kb on + strand at 30.213 kb on + strand at 30.214 kb on - strand at 30.214 kb on - strand at 30.244 kb on + strand at 30.244 kb on + strand at 30.285 kb on + strand at 30.285 kb on + strand at 30.285 kb on + strand at 30.286 kb on - strand at 30.286 kb on - strand at 30.286 kb on - strand at 30.286 kb on - strand at 30.292 kb on + strand at 30.292 kb on + strand at 30.292 kb on + strand at 30.293 kb on - strand at 30.293 kb on - strand at 30.305 kb on + strand at 30.305 kb on + strand at 30.306 kb on - strand at 30.307 kb on + strand at 30.307 kb on + strand at 30.307 kb on + strand at 30.307 kb on + strand at 30.307 kb on + strand at 30.307 kb on + strand at 30.308 kb on - strand at 30.308 kb on - strand at 30.308 kb on - strand at 30.308 kb on - strand at 30.308 kb on - strand at 30.313 kb on + strand at 30.314 kb on - strand at 30.339 kb on - strand at 30.339 kb on - strand at 30.433 kb on - strand at 30.538 kb on + strand at 30.538 kb on + strand at 30.539 kb on - strand at 30.616 kb on + strand at 30.617 kb on - strand at 30.617 kb on - strand at 30.617 kb on - strand at 30.617 kb on - strand at 30.688 kb on + strand at 30.688 kb on + strand at 30.688 kb on + strand at 30.688 kb on + strand at 30.688 kb on + strand at 30.688 kb on + strand at 30.689 kb on - strand at 30.689 kb on - strand at 30.689 kb on - strand at 30.689 kb on - strand at 30.690 kb on + strand at 30.690 kb on + strand at 30.690 kb on + strand at 30.690 kb on + strand at 30.690 kb on + strand at 30.690 kb on + strand at 30.691 kb on - strand at 30.691 kb on - strand at 30.691 kb on - strand at 30.691 kb on - strand at 30.691 kb on - strand at 30.691 kb on - strand at 30.691 kb on - strand at 30.723 kb on - strand at 30.723 kb on - strand at 30.723 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 28,479 + MPMX19_06279 0.82 +0.1 28,479 + MPMX19_06279 0.82 -1.4 28,479 + MPMX19_06279 0.82 -1.2 28,479 + MPMX19_06279 0.82 +1.0 28,479 + MPMX19_06279 0.82 +0.7 28,479 + MPMX19_06279 0.82 +0.1 28,479 + MPMX19_06279 0.82 -0.1 28,479 + MPMX19_06279 0.82 -0.0 28,479 + MPMX19_06279 0.82 +1.0 28,479 + MPMX19_06279 0.82 -0.7 28,479 + MPMX19_06279 0.82 -0.1 28,479 + MPMX19_06279 0.82 -0.7 28,479 + MPMX19_06279 0.82 -0.4 28,479 + MPMX19_06279 0.82 -0.4 28,479 + MPMX19_06279 0.82 -0.4 28,479 + MPMX19_06279 0.82 -1.0 28,479 + MPMX19_06279 0.82 -0.9 28,480 - MPMX19_06279 0.82 +0.6 28,480 - MPMX19_06279 0.82 -0.1 28,480 - MPMX19_06279 0.82 -1.0 28,480 - MPMX19_06279 0.82 -0.1 28,480 - MPMX19_06279 0.82 +0.1 28,480 - MPMX19_06279 0.82 +0.6 28,480 - MPMX19_06279 0.82 +0.7 28,480 - MPMX19_06279 0.82 -0.0 28,570 - +0.1 28,570 - -2.3 28,570 - +0.3 28,570 - -1.3 28,687 + -1.9 28,700 + +0.1 28,701 - +0.6 28,732 + -0.7 28,732 + -0.9 28,732 + -2.0 28,732 + -0.4 28,732 + -0.4 28,732 + -0.4 28,736 + -1.2 28,737 - -0.3 28,737 - +0.3 28,737 - -0.3 28,795 + -0.9 28,813 - -0.1 29,217 + MPMX19_06280 0.63 -0.9 29,217 + MPMX19_06280 0.63 -0.2 29,217 + MPMX19_06280 0.63 -1.6 29,217 + MPMX19_06280 0.63 -2.4 29,218 - MPMX19_06280 0.64 -0.9 29,218 - MPMX19_06280 0.64 +1.4 29,218 - MPMX19_06280 0.64 -1.4 29,218 - MPMX19_06280 0.64 -0.7 29,218 - MPMX19_06280 0.64 -0.0 29,241 + MPMX19_06280 0.68 -0.2 29,241 + MPMX19_06280 0.68 -0.4 29,241 + MPMX19_06280 0.68 -1.1 29,241 + MPMX19_06280 0.68 -0.4 29,241 + MPMX19_06280 0.68 -0.4 29,241 + MPMX19_06280 0.68 -1.2 29,242 - MPMX19_06280 0.69 -1.8 29,242 - MPMX19_06280 0.69 -1.0 29,242 - MPMX19_06280 0.69 -1.4 29,242 - MPMX19_06280 0.69 +0.3 29,242 - MPMX19_06280 0.69 -1.3 29,242 - MPMX19_06280 0.69 -1.3 29,242 - MPMX19_06280 0.69 -0.4 29,242 - MPMX19_06280 0.69 -0.6 29,242 - MPMX19_06280 0.69 +1.0 29,242 - MPMX19_06280 0.69 -1.2 29,304 + MPMX19_06280 0.82 -2.4 29,304 + MPMX19_06280 0.82 -1.0 29,304 + MPMX19_06280 0.82 -1.6 29,304 + MPMX19_06280 0.82 +0.6 29,304 + MPMX19_06280 0.82 -0.4 29,305 - MPMX19_06280 0.82 -2.1 29,411 + -0.2 29,411 + -1.9 29,411 + +0.4 29,411 + -0.9 29,411 + -0.9 29,412 - -1.3 29,412 - -0.0 29,412 - +0.7 29,462 + MPMX19_06281 0.13 -1.4 29,462 + MPMX19_06281 0.13 -1.6 29,462 + MPMX19_06281 0.13 -0.9 29,463 - MPMX19_06281 0.13 -2.7 29,463 - MPMX19_06281 0.13 -0.2 29,463 - MPMX19_06281 0.13 -0.8 29,638 + MPMX19_06281 0.51 -2.0 29,800 + MPMX19_06281 0.87 -1.4 29,801 - MPMX19_06281 0.87 -1.3 29,801 - MPMX19_06281 0.87 -2.4 29,801 - MPMX19_06281 0.87 -1.2 29,890 + -1.0 29,890 + +0.6 29,891 - +0.7 29,891 - -0.6 30,000 + -0.8 30,000 + +1.6 30,000 + -1.1 30,000 + -0.8 30,213 + -1.7 30,213 + +0.1 30,214 - -0.2 30,214 - +1.5 30,244 + -1.0 30,244 + -1.0 30,285 + -1.0 30,285 + -1.2 30,285 + -0.6 30,286 - -0.7 30,286 - -1.0 30,286 - -0.5 30,286 - -1.3 30,292 + -1.0 30,292 + -0.4 30,292 + -0.5 30,293 - +0.9 30,293 - +0.9 30,305 + +0.1 30,305 + +0.7 30,306 - -0.9 30,307 + -0.4 30,307 + +0.4 30,307 + -0.4 30,307 + -1.4 30,307 + -0.4 30,307 + +0.2 30,308 - -0.7 30,308 - +0.4 30,308 - -0.0 30,308 - -0.9 30,308 - -0.1 30,313 + -2.0 30,314 - -1.7 30,339 - -1.3 30,339 - -0.2 30,433 - -1.1 30,538 + +2.1 30,538 + +0.6 30,539 - -0.2 30,616 + -1.7 30,617 - -0.7 30,617 - -0.4 30,617 - +0.1 30,617 - -0.9 30,688 + +0.4 30,688 + -0.3 30,688 + +0.1 30,688 + -0.2 30,688 + -0.9 30,688 + -2.2 30,689 - -0.2 30,689 - +0.3 30,689 - -1.7 30,689 - -1.0 30,690 + -0.3 30,690 + +0.6 30,690 + -0.4 30,690 + +1.4 30,690 + -1.4 30,690 + -1.1 30,691 - -0.4 30,691 - -1.7 30,691 - -0.7 30,691 - -1.7 30,691 - +0.1 30,691 - -0.4 30,691 - -1.1 30,723 - -0.6 30,723 - +0.5 30,723 - -0.9
Or see this region's nucleotide sequence