Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06223 and MPMX19_06224 are separated by 165 nucleotides MPMX19_06224 and MPMX19_06225 are separated by 84 nucleotides
MPMX19_06223: MPMX19_06223 - HTH-type transcriptional regulator GbpR, at 407,960 to 408,952
_06223
MPMX19_06224: MPMX19_06224 - Multiple sugar-binding periplasmic protein SbpA, at 409,118 to 410,209
_06224
MPMX19_06225: MPMX19_06225 - Xylose import ATP-binding protein XylG, at 410,294 to 411,889
_06225
Position (kb)
409
410
411 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 408.182 kb on + strand, within MPMX19_06223 at 408.458 kb on + strand, within MPMX19_06223 at 408.458 kb on + strand, within MPMX19_06223 at 408.458 kb on + strand, within MPMX19_06223 at 408.458 kb on + strand, within MPMX19_06223 at 408.459 kb on - strand, within MPMX19_06223 at 408.459 kb on - strand, within MPMX19_06223 at 408.459 kb on - strand, within MPMX19_06223 at 408.459 kb on - strand, within MPMX19_06223 at 408.459 kb on - strand, within MPMX19_06223 at 408.480 kb on - strand, within MPMX19_06223 at 408.480 kb on - strand, within MPMX19_06223 at 408.818 kb on + strand, within MPMX19_06223 at 408.819 kb on - strand, within MPMX19_06223 at 409.094 kb on + strand at 409.094 kb on + strand at 409.098 kb on - strand at 409.098 kb on - strand at 409.098 kb on - strand at 409.098 kb on - strand at 409.298 kb on + strand, within MPMX19_06224 at 409.298 kb on + strand, within MPMX19_06224 at 409.299 kb on - strand, within MPMX19_06224 at 409.316 kb on + strand, within MPMX19_06224 at 409.317 kb on - strand, within MPMX19_06224 at 409.334 kb on + strand, within MPMX19_06224 at 409.334 kb on + strand, within MPMX19_06224 at 409.335 kb on - strand, within MPMX19_06224 at 409.335 kb on - strand, within MPMX19_06224 at 409.335 kb on - strand, within MPMX19_06224 at 409.335 kb on - strand, within MPMX19_06224 at 409.335 kb on - strand, within MPMX19_06224 at 409.484 kb on + strand, within MPMX19_06224 at 409.484 kb on + strand, within MPMX19_06224 at 409.484 kb on + strand, within MPMX19_06224 at 409.485 kb on - strand, within MPMX19_06224 at 409.485 kb on - strand, within MPMX19_06224 at 409.485 kb on - strand, within MPMX19_06224 at 409.485 kb on - strand, within MPMX19_06224 at 409.485 kb on - strand, within MPMX19_06224 at 409.485 kb on - strand, within MPMX19_06224 at 409.485 kb on - strand, within MPMX19_06224 at 409.520 kb on + strand, within MPMX19_06224 at 409.520 kb on + strand, within MPMX19_06224 at 409.520 kb on + strand, within MPMX19_06224 at 409.520 kb on + strand, within MPMX19_06224 at 409.521 kb on - strand, within MPMX19_06224 at 409.521 kb on - strand, within MPMX19_06224 at 409.521 kb on - strand, within MPMX19_06224 at 409.521 kb on - strand, within MPMX19_06224 at 409.523 kb on + strand, within MPMX19_06224 at 409.523 kb on + strand, within MPMX19_06224 at 409.524 kb on - strand, within MPMX19_06224 at 409.524 kb on - strand, within MPMX19_06224 at 409.524 kb on - strand, within MPMX19_06224 at 409.524 kb on - strand, within MPMX19_06224 at 409.568 kb on + strand, within MPMX19_06224 at 409.568 kb on + strand, within MPMX19_06224 at 409.568 kb on + strand, within MPMX19_06224 at 409.568 kb on + strand, within MPMX19_06224 at 409.568 kb on + strand, within MPMX19_06224 at 409.568 kb on + strand, within MPMX19_06224 at 409.568 kb on + strand, within MPMX19_06224 at 409.568 kb on + strand, within MPMX19_06224 at 409.568 kb on + strand, within MPMX19_06224 at 409.569 kb on - strand, within MPMX19_06224 at 409.569 kb on - strand, within MPMX19_06224 at 409.569 kb on - strand, within MPMX19_06224 at 409.569 kb on - strand, within MPMX19_06224 at 409.569 kb on - strand, within MPMX19_06224 at 409.569 kb on - strand, within MPMX19_06224 at 409.569 kb on - strand, within MPMX19_06224 at 409.569 kb on - strand, within MPMX19_06224 at 409.655 kb on + strand, within MPMX19_06224 at 409.655 kb on + strand, within MPMX19_06224 at 409.655 kb on + strand, within MPMX19_06224 at 409.655 kb on + strand, within MPMX19_06224 at 409.655 kb on + strand, within MPMX19_06224 at 409.655 kb on + strand, within MPMX19_06224 at 409.656 kb on - strand, within MPMX19_06224 at 409.656 kb on - strand, within MPMX19_06224 at 409.656 kb on - strand, within MPMX19_06224 at 409.656 kb on - strand, within MPMX19_06224 at 409.656 kb on - strand, within MPMX19_06224 at 409.656 kb on - strand, within MPMX19_06224 at 409.664 kb on + strand, within MPMX19_06224 at 409.664 kb on + strand, within MPMX19_06224 at 409.664 kb on + strand, within MPMX19_06224 at 409.664 kb on + strand, within MPMX19_06224 at 409.664 kb on + strand, within MPMX19_06224 at 409.665 kb on - strand, within MPMX19_06224 at 409.694 kb on + strand, within MPMX19_06224 at 409.694 kb on + strand, within MPMX19_06224 at 409.694 kb on + strand, within MPMX19_06224 at 409.694 kb on + strand, within MPMX19_06224 at 409.694 kb on + strand, within MPMX19_06224 at 409.694 kb on + strand, within MPMX19_06224 at 409.694 kb on + strand, within MPMX19_06224 at 409.694 kb on + strand, within MPMX19_06224 at 409.694 kb on + strand, within MPMX19_06224 at 409.694 kb on + strand, within MPMX19_06224 at 409.695 kb on - strand, within MPMX19_06224 at 409.695 kb on - strand, within MPMX19_06224 at 409.695 kb on - strand, within MPMX19_06224 at 409.695 kb on - strand, within MPMX19_06224 at 409.695 kb on - strand, within MPMX19_06224 at 409.695 kb on - strand, within MPMX19_06224 at 409.695 kb on - strand, within MPMX19_06224 at 409.811 kb on + strand, within MPMX19_06224 at 409.811 kb on + strand, within MPMX19_06224 at 409.811 kb on + strand, within MPMX19_06224 at 409.811 kb on + strand, within MPMX19_06224 at 409.811 kb on + strand, within MPMX19_06224 at 409.812 kb on - strand, within MPMX19_06224 at 409.812 kb on - strand, within MPMX19_06224 at 409.812 kb on - strand, within MPMX19_06224 at 409.814 kb on + strand, within MPMX19_06224 at 409.814 kb on + strand, within MPMX19_06224 at 409.814 kb on + strand, within MPMX19_06224 at 409.814 kb on + strand, within MPMX19_06224 at 409.815 kb on - strand, within MPMX19_06224 at 409.815 kb on - strand, within MPMX19_06224 at 409.815 kb on - strand, within MPMX19_06224 at 409.850 kb on + strand, within MPMX19_06224 at 409.850 kb on + strand, within MPMX19_06224 at 409.851 kb on - strand, within MPMX19_06224 at 409.898 kb on + strand, within MPMX19_06224 at 410.090 kb on + strand, within MPMX19_06224 at 410.090 kb on + strand, within MPMX19_06224 at 410.090 kb on + strand, within MPMX19_06224 at 410.090 kb on + strand, within MPMX19_06224 at 410.091 kb on - strand, within MPMX19_06224 at 410.091 kb on - strand, within MPMX19_06224 at 410.091 kb on - strand, within MPMX19_06224 at 410.091 kb on - strand, within MPMX19_06224 at 410.091 kb on - strand, within MPMX19_06224 at 410.120 kb on + strand at 410.120 kb on + strand at 410.120 kb on + strand at 410.120 kb on + strand at 410.121 kb on - strand at 410.121 kb on - strand at 410.121 kb on - strand at 410.121 kb on - strand at 410.121 kb on - strand at 410.121 kb on - strand at 410.121 kb on - strand at 410.183 kb on + strand at 410.183 kb on + strand at 410.184 kb on - strand at 410.184 kb on - strand at 410.186 kb on + strand at 410.186 kb on + strand at 410.186 kb on + strand at 410.186 kb on + strand at 410.186 kb on + strand at 410.186 kb on + strand at 410.186 kb on + strand at 410.186 kb on + strand at 410.186 kb on + strand at 410.186 kb on + strand at 410.187 kb on - strand at 410.187 kb on - strand at 410.187 kb on - strand at 410.187 kb on - strand at 410.187 kb on - strand at 410.187 kb on - strand at 410.187 kb on - strand at 410.187 kb on - strand at 410.187 kb on - strand at 410.453 kb on + strand at 410.453 kb on + strand at 410.453 kb on + strand at 410.453 kb on + strand at 410.468 kb on + strand, within MPMX19_06225 at 410.468 kb on + strand, within MPMX19_06225 at 410.468 kb on + strand, within MPMX19_06225 at 410.468 kb on + strand, within MPMX19_06225 at 410.468 kb on + strand, within MPMX19_06225 at 410.468 kb on + strand, within MPMX19_06225 at 410.468 kb on + strand, within MPMX19_06225 at 410.468 kb on + strand, within MPMX19_06225 at 410.469 kb on - strand, within MPMX19_06225 at 410.469 kb on - strand, within MPMX19_06225 at 410.469 kb on - strand, within MPMX19_06225 at 410.469 kb on - strand, within MPMX19_06225 at 410.469 kb on - strand, within MPMX19_06225 at 410.469 kb on - strand, within MPMX19_06225 at 410.469 kb on - strand, within MPMX19_06225 at 410.469 kb on - strand, within MPMX19_06225 at 410.469 kb on - strand, within MPMX19_06225 at 410.469 kb on - strand, within MPMX19_06225 at 410.469 kb on - strand, within MPMX19_06225
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 408,182 + MPMX19_06223 0.22 +0.5 408,458 + MPMX19_06223 0.50 -1.1 408,458 + MPMX19_06223 0.50 +0.5 408,458 + MPMX19_06223 0.50 -1.0 408,458 + MPMX19_06223 0.50 -1.7 408,459 - MPMX19_06223 0.50 +0.1 408,459 - MPMX19_06223 0.50 -1.1 408,459 - MPMX19_06223 0.50 -1.1 408,459 - MPMX19_06223 0.50 +0.7 408,459 - MPMX19_06223 0.50 -0.9 408,480 - MPMX19_06223 0.52 -1.1 408,480 - MPMX19_06223 0.52 -0.4 408,818 + MPMX19_06223 0.86 +0.9 408,819 - MPMX19_06223 0.87 -0.1 409,094 + -2.1 409,094 + -0.7 409,098 - -0.3 409,098 - +0.2 409,098 - -0.9 409,098 - +0.6 409,298 + MPMX19_06224 0.16 +0.4 409,298 + MPMX19_06224 0.16 +0.9 409,299 - MPMX19_06224 0.17 -1.4 409,316 + MPMX19_06224 0.18 +0.4 409,317 - MPMX19_06224 0.18 -0.5 409,334 + MPMX19_06224 0.20 -0.3 409,334 + MPMX19_06224 0.20 -1.8 409,335 - MPMX19_06224 0.20 +0.0 409,335 - MPMX19_06224 0.20 -1.9 409,335 - MPMX19_06224 0.20 -1.4 409,335 - MPMX19_06224 0.20 -0.4 409,335 - MPMX19_06224 0.20 -0.1 409,484 + MPMX19_06224 0.34 +0.6 409,484 + MPMX19_06224 0.34 -0.4 409,484 + MPMX19_06224 0.34 +0.3 409,485 - MPMX19_06224 0.34 +1.2 409,485 - MPMX19_06224 0.34 +0.1 409,485 - MPMX19_06224 0.34 -1.1 409,485 - MPMX19_06224 0.34 -1.3 409,485 - MPMX19_06224 0.34 -0.4 409,485 - MPMX19_06224 0.34 +0.6 409,485 - MPMX19_06224 0.34 -1.4 409,520 + MPMX19_06224 0.37 -0.7 409,520 + MPMX19_06224 0.37 +0.3 409,520 + MPMX19_06224 0.37 -0.2 409,520 + MPMX19_06224 0.37 +0.3 409,521 - MPMX19_06224 0.37 -0.7 409,521 - MPMX19_06224 0.37 +0.7 409,521 - MPMX19_06224 0.37 -0.1 409,521 - MPMX19_06224 0.37 +0.0 409,523 + MPMX19_06224 0.37 -0.4 409,523 + MPMX19_06224 0.37 -0.1 409,524 - MPMX19_06224 0.37 +0.5 409,524 - MPMX19_06224 0.37 -0.4 409,524 - MPMX19_06224 0.37 +0.5 409,524 - MPMX19_06224 0.37 -0.3 409,568 + MPMX19_06224 0.41 +0.2 409,568 + MPMX19_06224 0.41 -0.1 409,568 + MPMX19_06224 0.41 -0.5 409,568 + MPMX19_06224 0.41 -0.4 409,568 + MPMX19_06224 0.41 +0.5 409,568 + MPMX19_06224 0.41 -0.1 409,568 + MPMX19_06224 0.41 -0.8 409,568 + MPMX19_06224 0.41 +0.5 409,568 + MPMX19_06224 0.41 -1.1 409,569 - MPMX19_06224 0.41 -1.9 409,569 - MPMX19_06224 0.41 +0.2 409,569 - MPMX19_06224 0.41 -2.3 409,569 - MPMX19_06224 0.41 -1.7 409,569 - MPMX19_06224 0.41 -1.5 409,569 - MPMX19_06224 0.41 -0.9 409,569 - MPMX19_06224 0.41 +0.5 409,569 - MPMX19_06224 0.41 -0.6 409,655 + MPMX19_06224 0.49 +0.1 409,655 + MPMX19_06224 0.49 -0.2 409,655 + MPMX19_06224 0.49 -0.1 409,655 + MPMX19_06224 0.49 +0.5 409,655 + MPMX19_06224 0.49 -0.7 409,655 + MPMX19_06224 0.49 +0.1 409,656 - MPMX19_06224 0.49 -0.3 409,656 - MPMX19_06224 0.49 -1.9 409,656 - MPMX19_06224 0.49 -0.7 409,656 - MPMX19_06224 0.49 +1.1 409,656 - MPMX19_06224 0.49 -0.8 409,656 - MPMX19_06224 0.49 -0.5 409,664 + MPMX19_06224 0.50 +0.4 409,664 + MPMX19_06224 0.50 -1.0 409,664 + MPMX19_06224 0.50 +1.2 409,664 + MPMX19_06224 0.50 -0.7 409,664 + MPMX19_06224 0.50 +0.6 409,665 - MPMX19_06224 0.50 -2.7 409,694 + MPMX19_06224 0.53 -1.4 409,694 + MPMX19_06224 0.53 -2.3 409,694 + MPMX19_06224 0.53 +0.5 409,694 + MPMX19_06224 0.53 -0.1 409,694 + MPMX19_06224 0.53 -0.1 409,694 + MPMX19_06224 0.53 -0.7 409,694 + MPMX19_06224 0.53 +0.3 409,694 + MPMX19_06224 0.53 -1.6 409,694 + MPMX19_06224 0.53 -2.1 409,694 + MPMX19_06224 0.53 -0.8 409,695 - MPMX19_06224 0.53 -0.4 409,695 - MPMX19_06224 0.53 -0.8 409,695 - MPMX19_06224 0.53 +0.2 409,695 - MPMX19_06224 0.53 -0.1 409,695 - MPMX19_06224 0.53 -0.1 409,695 - MPMX19_06224 0.53 -1.9 409,695 - MPMX19_06224 0.53 -0.6 409,811 + MPMX19_06224 0.63 -0.1 409,811 + MPMX19_06224 0.63 +0.3 409,811 + MPMX19_06224 0.63 -1.9 409,811 + MPMX19_06224 0.63 -0.9 409,811 + MPMX19_06224 0.63 +1.4 409,812 - MPMX19_06224 0.64 +0.9 409,812 - MPMX19_06224 0.64 -0.7 409,812 - MPMX19_06224 0.64 +0.9 409,814 + MPMX19_06224 0.64 -0.1 409,814 + MPMX19_06224 0.64 +0.7 409,814 + MPMX19_06224 0.64 +0.5 409,814 + MPMX19_06224 0.64 -0.3 409,815 - MPMX19_06224 0.64 +0.1 409,815 - MPMX19_06224 0.64 -0.1 409,815 - MPMX19_06224 0.64 +1.6 409,850 + MPMX19_06224 0.67 -0.7 409,850 + MPMX19_06224 0.67 -0.1 409,851 - MPMX19_06224 0.67 -0.7 409,898 + MPMX19_06224 0.71 -1.4 410,090 + MPMX19_06224 0.89 -0.5 410,090 + MPMX19_06224 0.89 +1.6 410,090 + MPMX19_06224 0.89 -1.7 410,090 + MPMX19_06224 0.89 +2.5 410,091 - MPMX19_06224 0.89 +1.9 410,091 - MPMX19_06224 0.89 +1.5 410,091 - MPMX19_06224 0.89 -1.5 410,091 - MPMX19_06224 0.89 -1.0 410,091 - MPMX19_06224 0.89 -1.5 410,120 + -1.1 410,120 + -1.4 410,120 + -0.7 410,120 + -0.8 410,121 - -1.1 410,121 - -0.1 410,121 - -0.7 410,121 - -0.4 410,121 - +0.9 410,121 - +0.9 410,121 - -1.0 410,183 + -1.1 410,183 + +0.3 410,184 - +0.0 410,184 - +1.3 410,186 + -0.1 410,186 + +1.5 410,186 + -1.4 410,186 + -0.9 410,186 + +0.7 410,186 + -0.1 410,186 + -2.7 410,186 + -0.9 410,186 + -0.9 410,186 + -0.1 410,187 - +0.6 410,187 - +1.1 410,187 - -0.8 410,187 - +0.6 410,187 - +0.4 410,187 - -1.6 410,187 - +0.3 410,187 - -0.9 410,187 - -0.6 410,453 + -1.1 410,453 + -0.4 410,453 + -2.1 410,453 + -0.8 410,468 + MPMX19_06225 0.11 -0.7 410,468 + MPMX19_06225 0.11 -0.1 410,468 + MPMX19_06225 0.11 -0.3 410,468 + MPMX19_06225 0.11 -1.1 410,468 + MPMX19_06225 0.11 -1.4 410,468 + MPMX19_06225 0.11 +1.3 410,468 + MPMX19_06225 0.11 -1.4 410,468 + MPMX19_06225 0.11 -0.1 410,469 - MPMX19_06225 0.11 -0.6 410,469 - MPMX19_06225 0.11 -0.1 410,469 - MPMX19_06225 0.11 -0.7 410,469 - MPMX19_06225 0.11 +0.9 410,469 - MPMX19_06225 0.11 +0.2 410,469 - MPMX19_06225 0.11 -1.4 410,469 - MPMX19_06225 0.11 +0.4 410,469 - MPMX19_06225 0.11 -0.3 410,469 - MPMX19_06225 0.11 -1.7 410,469 - MPMX19_06225 0.11 -0.7 410,469 - MPMX19_06225 0.11 -0.7
Or see this region's nucleotide sequence