Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06204

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06201 and MPMX19_06202 overlap by 4 nucleotidesMPMX19_06202 and MPMX19_06203 are separated by 4 nucleotidesMPMX19_06203 and MPMX19_06204 overlap by 11 nucleotidesMPMX19_06204 and MPMX19_06205 are separated by 186 nucleotides MPMX19_06201: MPMX19_06201 - hypothetical protein, at 388,966 to 389,757 _06201 MPMX19_06202: MPMX19_06202 - hypothetical protein, at 389,754 to 390,149 _06202 MPMX19_06203: MPMX19_06203 - flagellum biosynthesis repressor protein FlbT, at 390,154 to 390,639 _06203 MPMX19_06204: MPMX19_06204 - hypothetical protein, at 390,629 to 391,033 _06204 MPMX19_06205: MPMX19_06205 - hypothetical protein, at 391,220 to 392,464 _06205 Position (kb) 390 391 392Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 389.660 kb on + strand, within MPMX19_06201at 389.660 kb on + strand, within MPMX19_06201at 389.660 kb on + strand, within MPMX19_06201at 389.660 kb on + strand, within MPMX19_06201at 389.660 kb on + strand, within MPMX19_06201at 389.661 kb on - strand, within MPMX19_06201at 389.661 kb on - strand, within MPMX19_06201at 389.661 kb on - strand, within MPMX19_06201at 389.661 kb on - strand, within MPMX19_06201at 389.708 kb on + strandat 389.709 kb on - strandat 389.709 kb on - strandat 389.709 kb on - strandat 389.709 kb on - strandat 389.837 kb on - strand, within MPMX19_06202at 389.893 kb on + strand, within MPMX19_06202at 389.893 kb on + strand, within MPMX19_06202at 389.894 kb on - strand, within MPMX19_06202at 389.894 kb on - strand, within MPMX19_06202at 390.217 kb on + strand, within MPMX19_06203at 390.217 kb on + strand, within MPMX19_06203at 390.218 kb on - strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.275 kb on + strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.276 kb on - strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.311 kb on + strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.312 kb on - strand, within MPMX19_06203at 390.314 kb on + strand, within MPMX19_06203at 390.314 kb on + strand, within MPMX19_06203at 390.314 kb on + strand, within MPMX19_06203at 390.315 kb on - strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.386 kb on + strand, within MPMX19_06203at 390.387 kb on - strand, within MPMX19_06203at 390.387 kb on - strand, within MPMX19_06203at 390.387 kb on - strand, within MPMX19_06203at 390.387 kb on - strand, within MPMX19_06203at 390.387 kb on - strand, within MPMX19_06203at 390.387 kb on - strand, within MPMX19_06203at 390.470 kb on + strand, within MPMX19_06203at 390.470 kb on + strand, within MPMX19_06203at 390.470 kb on + strand, within MPMX19_06203at 390.470 kb on + strand, within MPMX19_06203at 390.470 kb on + strand, within MPMX19_06203at 390.471 kb on - strand, within MPMX19_06203at 390.471 kb on - strand, within MPMX19_06203at 390.471 kb on - strand, within MPMX19_06203at 390.471 kb on - strand, within MPMX19_06203at 390.560 kb on + strand, within MPMX19_06203at 390.561 kb on - strand, within MPMX19_06203at 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.630 kb on + strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.631 kb on - strandat 390.639 kb on + strandat 390.639 kb on + strandat 390.640 kb on - strandat 390.640 kb on - strandat 390.640 kb on - strandat 390.640 kb on - strandat 390.640 kb on - strandat 391.017 kb on + strandat 391.018 kb on - strandat 391.221 kb on + strandat 391.221 kb on + strandat 391.734 kb on + strand, within MPMX19_06205at 391.734 kb on + strand, within MPMX19_06205at 391.734 kb on + strand, within MPMX19_06205at 391.734 kb on + strand, within MPMX19_06205at 391.734 kb on + strand, within MPMX19_06205at 391.735 kb on - strand, within MPMX19_06205at 391.735 kb on - strand, within MPMX19_06205at 391.735 kb on - strand, within MPMX19_06205at 391.735 kb on - strand, within MPMX19_06205at 391.735 kb on - strand, within MPMX19_06205at 391.735 kb on - strand, within MPMX19_06205at 391.968 kb on + strand, within MPMX19_06205at 391.968 kb on + strand, within MPMX19_06205at 391.968 kb on + strand, within MPMX19_06205at 391.968 kb on + strand, within MPMX19_06205at 391.968 kb on + strand, within MPMX19_06205at 391.968 kb on + strand, within MPMX19_06205at 391.968 kb on + strand, within MPMX19_06205at 391.968 kb on + strand, within MPMX19_06205at 391.968 kb on + strand, within MPMX19_06205at 391.968 kb on + strand, within MPMX19_06205at 391.968 kb on + strand, within MPMX19_06205at 391.968 kb on + strand, within MPMX19_06205at 391.968 kb on + strand, within MPMX19_06205at 391.968 kb on + strand, within MPMX19_06205at 391.968 kb on + strand, within MPMX19_06205at 391.968 kb on + strand, within MPMX19_06205at 391.969 kb on - strand, within MPMX19_06205at 391.969 kb on - strand, within MPMX19_06205at 391.969 kb on - strand, within MPMX19_06205at 391.969 kb on - strand, within MPMX19_06205at 391.969 kb on - strand, within MPMX19_06205at 391.969 kb on - strand, within MPMX19_06205at 391.969 kb on - strand, within MPMX19_06205at 391.969 kb on - strand, within MPMX19_06205

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
389,660 + MPMX19_06201 0.88 +0.9
389,660 + MPMX19_06201 0.88 -0.1
389,660 + MPMX19_06201 0.88 +0.9
389,660 + MPMX19_06201 0.88 -0.5
389,660 + MPMX19_06201 0.88 -1.4
389,661 - MPMX19_06201 0.88 -1.1
389,661 - MPMX19_06201 0.88 +0.3
389,661 - MPMX19_06201 0.88 -0.3
389,661 - MPMX19_06201 0.88 -0.3
389,708 + +0.7
389,709 - +0.2
389,709 - -1.6
389,709 - +0.1
389,709 - +0.4
389,837 - MPMX19_06202 0.21 +2.5
389,893 + MPMX19_06202 0.35 -0.4
389,893 + MPMX19_06202 0.35 -1.3
389,894 - MPMX19_06202 0.35 +0.8
389,894 - MPMX19_06202 0.35 -0.9
390,217 + MPMX19_06203 0.13 +1.5
390,217 + MPMX19_06203 0.13 +0.1
390,218 - MPMX19_06203 0.13 -1.5
390,275 + MPMX19_06203 0.25 +0.1
390,275 + MPMX19_06203 0.25 -1.8
390,275 + MPMX19_06203 0.25 -1.7
390,275 + MPMX19_06203 0.25 +0.9
390,275 + MPMX19_06203 0.25 -0.4
390,275 + MPMX19_06203 0.25 -0.3
390,275 + MPMX19_06203 0.25 -1.1
390,275 + MPMX19_06203 0.25 +0.2
390,275 + MPMX19_06203 0.25 -1.2
390,275 + MPMX19_06203 0.25 -2.6
390,275 + MPMX19_06203 0.25 -1.3
390,275 + MPMX19_06203 0.25 +1.0
390,275 + MPMX19_06203 0.25 -0.4
390,275 + MPMX19_06203 0.25 -1.0
390,275 + MPMX19_06203 0.25 -1.1
390,276 - MPMX19_06203 0.25 -0.1
390,276 - MPMX19_06203 0.25 -0.4
390,276 - MPMX19_06203 0.25 -0.1
390,276 - MPMX19_06203 0.25 -1.3
390,276 - MPMX19_06203 0.25 +0.3
390,276 - MPMX19_06203 0.25 +0.4
390,276 - MPMX19_06203 0.25 -1.1
390,276 - MPMX19_06203 0.25 -1.1
390,276 - MPMX19_06203 0.25 -1.1
390,276 - MPMX19_06203 0.25 -0.9
390,311 + MPMX19_06203 0.32 -1.7
390,311 + MPMX19_06203 0.32 -0.7
390,311 + MPMX19_06203 0.32 +0.1
390,311 + MPMX19_06203 0.32 -0.3
390,311 + MPMX19_06203 0.32 -0.7
390,311 + MPMX19_06203 0.32 -0.6
390,311 + MPMX19_06203 0.32 -1.3
390,311 + MPMX19_06203 0.32 -0.7
390,312 - MPMX19_06203 0.33 -1.7
390,312 - MPMX19_06203 0.33 -2.0
390,312 - MPMX19_06203 0.33 -2.1
390,312 - MPMX19_06203 0.33 -0.1
390,312 - MPMX19_06203 0.33 -1.1
390,312 - MPMX19_06203 0.33 -1.9
390,312 - MPMX19_06203 0.33 +0.3
390,314 + MPMX19_06203 0.33 +1.1
390,314 + MPMX19_06203 0.33 +2.2
390,314 + MPMX19_06203 0.33 -1.9
390,315 - MPMX19_06203 0.33 +0.5
390,386 + MPMX19_06203 0.48 +0.5
390,386 + MPMX19_06203 0.48 -1.7
390,386 + MPMX19_06203 0.48 +0.7
390,386 + MPMX19_06203 0.48 -0.1
390,386 + MPMX19_06203 0.48 -0.9
390,386 + MPMX19_06203 0.48 +0.5
390,386 + MPMX19_06203 0.48 -1.1
390,386 + MPMX19_06203 0.48 -0.8
390,386 + MPMX19_06203 0.48 +0.0
390,387 - MPMX19_06203 0.48 -2.4
390,387 - MPMX19_06203 0.48 -1.3
390,387 - MPMX19_06203 0.48 -0.7
390,387 - MPMX19_06203 0.48 +0.5
390,387 - MPMX19_06203 0.48 -1.4
390,387 - MPMX19_06203 0.48 +1.3
390,470 + MPMX19_06203 0.65 -1.0
390,470 + MPMX19_06203 0.65 +0.9
390,470 + MPMX19_06203 0.65 -0.8
390,470 + MPMX19_06203 0.65 -2.3
390,470 + MPMX19_06203 0.65 -1.7
390,471 - MPMX19_06203 0.65 +0.4
390,471 - MPMX19_06203 0.65 -2.3
390,471 - MPMX19_06203 0.65 +0.8
390,471 - MPMX19_06203 0.65 -0.7
390,560 + MPMX19_06203 0.84 -0.6
390,561 - MPMX19_06203 0.84 +0.2
390,630 + -3.0
390,630 + -1.9
390,630 + +0.1
390,630 + -2.1
390,630 + -1.9
390,630 + -2.1
390,630 + -0.7
390,630 + -0.4
390,630 + -1.1
390,630 + -0.3
390,630 + +0.9
390,630 + -0.2
390,630 + +0.3
390,630 + -1.8
390,630 + -0.1
390,630 + +0.2
390,630 + -0.5
390,630 + -0.1
390,630 + -0.9
390,630 + -2.3
390,630 + -0.2
390,630 + +1.5
390,630 + -0.7
390,630 + -0.8
390,630 + -0.9
390,631 - -0.3
390,631 - +0.2
390,631 - -0.1
390,631 - -0.7
390,631 - -0.2
390,631 - -1.4
390,631 - +0.9
390,631 - -1.6
390,631 - +0.5
390,631 - -0.5
390,631 - +0.4
390,631 - +0.5
390,631 - +1.8
390,631 - -2.4
390,631 - +1.2
390,631 - +0.7
390,631 - +0.3
390,631 - -2.4
390,631 - -0.5
390,631 - -1.1
390,631 - -1.1
390,639 + -0.9
390,639 + -1.7
390,640 - -1.9
390,640 - -2.6
390,640 - -1.6
390,640 - +0.9
390,640 - -1.1
391,017 + -1.9
391,018 - +0.9
391,221 + +1.2
391,221 + -0.1
391,734 + MPMX19_06205 0.41 +0.5
391,734 + MPMX19_06205 0.41 -1.9
391,734 + MPMX19_06205 0.41 +0.5
391,734 + MPMX19_06205 0.41 -1.0
391,734 + MPMX19_06205 0.41 -0.4
391,735 - MPMX19_06205 0.41 +0.2
391,735 - MPMX19_06205 0.41 +0.7
391,735 - MPMX19_06205 0.41 -0.7
391,735 - MPMX19_06205 0.41 -1.3
391,735 - MPMX19_06205 0.41 +1.6
391,735 - MPMX19_06205 0.41 -0.9
391,968 + MPMX19_06205 0.60 +1.3
391,968 + MPMX19_06205 0.60 -0.1
391,968 + MPMX19_06205 0.60 -0.8
391,968 + MPMX19_06205 0.60 -1.4
391,968 + MPMX19_06205 0.60 -0.1
391,968 + MPMX19_06205 0.60 -0.6
391,968 + MPMX19_06205 0.60 +0.9
391,968 + MPMX19_06205 0.60 +0.4
391,968 + MPMX19_06205 0.60 -1.4
391,968 + MPMX19_06205 0.60 -1.0
391,968 + MPMX19_06205 0.60 -2.1
391,968 + MPMX19_06205 0.60 -0.4
391,968 + MPMX19_06205 0.60 +0.2
391,968 + MPMX19_06205 0.60 +0.5
391,968 + MPMX19_06205 0.60 -0.7
391,968 + MPMX19_06205 0.60 -1.1
391,969 - MPMX19_06205 0.60 +0.3
391,969 - MPMX19_06205 0.60 -1.1
391,969 - MPMX19_06205 0.60 -0.5
391,969 - MPMX19_06205 0.60 -1.9
391,969 - MPMX19_06205 0.60 -0.1
391,969 - MPMX19_06205 0.60 -0.8
391,969 - MPMX19_06205 0.60 +0.5
391,969 - MPMX19_06205 0.60 -1.0

Or see this region's nucleotide sequence