Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06014 and MPMX19_06015 are separated by 204 nucleotides MPMX19_06015 and MPMX19_06016 are separated by 0 nucleotides MPMX19_06016 and MPMX19_06017 are separated by 140 nucleotides MPMX19_06017 and MPMX19_06018 are separated by 28 nucleotides
MPMX19_06014: MPMX19_06014 - Histidinol-phosphate aminotransferase, at 167,174 to 168,580
_06014
MPMX19_06015: MPMX19_06015 - Aerobic respiration control protein ArcA, at 168,785 to 169,480
_06015
MPMX19_06016: MPMX19_06016 - putative N-octanoylanthranilate hydrolase AqdA1, at 169,481 to 170,311
_06016
MPMX19_06017: MPMX19_06017 - hypothetical protein, at 170,452 to 171,081
_06017
MPMX19_06018: MPMX19_06018 - hypothetical protein, at 171,110 to 171,673
_06018
Position (kb) 169
170
171 Strain fitness (log2 ratio) -2
-1
0
1
2 at 168.534 kb on + strand at 168.535 kb on - strand at 168.691 kb on - strand at 168.724 kb on + strand at 168.724 kb on + strand at 168.725 kb on - strand at 168.725 kb on - strand at 168.725 kb on - strand at 168.725 kb on - strand at 168.725 kb on - strand at 168.725 kb on - strand at 168.843 kb on - strand at 168.843 kb on - strand at 168.843 kb on - strand at 169.076 kb on + strand, within MPMX19_06015 at 169.076 kb on + strand, within MPMX19_06015 at 169.076 kb on + strand, within MPMX19_06015 at 169.076 kb on + strand, within MPMX19_06015 at 169.077 kb on - strand, within MPMX19_06015 at 169.077 kb on - strand, within MPMX19_06015 at 169.077 kb on - strand, within MPMX19_06015 at 169.077 kb on - strand, within MPMX19_06015 at 169.077 kb on - strand, within MPMX19_06015 at 169.077 kb on - strand, within MPMX19_06015 at 169.077 kb on - strand, within MPMX19_06015 at 169.077 kb on - strand, within MPMX19_06015 at 169.077 kb on - strand, within MPMX19_06015 at 169.077 kb on - strand, within MPMX19_06015 at 169.077 kb on - strand, within MPMX19_06015 at 169.077 kb on - strand, within MPMX19_06015 at 169.077 kb on - strand, within MPMX19_06015 at 169.356 kb on - strand, within MPMX19_06015 at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.454 kb on + strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.455 kb on - strand at 169.599 kb on + strand, within MPMX19_06016 at 169.599 kb on + strand, within MPMX19_06016 at 169.599 kb on + strand, within MPMX19_06016 at 169.599 kb on + strand, within MPMX19_06016 at 169.599 kb on + strand, within MPMX19_06016 at 169.599 kb on + strand, within MPMX19_06016 at 169.599 kb on + strand, within MPMX19_06016 at 169.599 kb on + strand, within MPMX19_06016 at 169.599 kb on + strand, within MPMX19_06016 at 169.812 kb on + strand, within MPMX19_06016 at 169.813 kb on - strand, within MPMX19_06016 at 169.813 kb on - strand, within MPMX19_06016 at 169.813 kb on - strand, within MPMX19_06016 at 169.813 kb on - strand, within MPMX19_06016 at 169.911 kb on + strand, within MPMX19_06016 at 169.911 kb on + strand, within MPMX19_06016 at 169.911 kb on + strand, within MPMX19_06016 at 169.911 kb on + strand, within MPMX19_06016 at 169.911 kb on + strand, within MPMX19_06016 at 169.911 kb on + strand, within MPMX19_06016 at 169.911 kb on + strand, within MPMX19_06016 at 169.911 kb on + strand, within MPMX19_06016 at 169.911 kb on + strand, within MPMX19_06016 at 169.911 kb on + strand, within MPMX19_06016 at 169.912 kb on - strand, within MPMX19_06016 at 169.912 kb on - strand, within MPMX19_06016 at 169.912 kb on - strand, within MPMX19_06016 at 169.912 kb on - strand, within MPMX19_06016 at 169.912 kb on - strand, within MPMX19_06016 at 169.912 kb on - strand, within MPMX19_06016 at 169.912 kb on - strand, within MPMX19_06016 at 169.912 kb on - strand, within MPMX19_06016 at 170.040 kb on + strand, within MPMX19_06016 at 170.040 kb on + strand, within MPMX19_06016 at 170.041 kb on - strand, within MPMX19_06016 at 170.049 kb on + strand, within MPMX19_06016 at 170.070 kb on + strand, within MPMX19_06016 at 170.070 kb on + strand, within MPMX19_06016 at 170.071 kb on - strand, within MPMX19_06016 at 170.071 kb on - strand, within MPMX19_06016 at 170.071 kb on - strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.106 kb on + strand, within MPMX19_06016 at 170.107 kb on - strand, within MPMX19_06016 at 170.107 kb on - strand, within MPMX19_06016 at 170.107 kb on - strand, within MPMX19_06016 at 170.107 kb on - strand, within MPMX19_06016 at 170.107 kb on - strand, within MPMX19_06016 at 170.142 kb on + strand, within MPMX19_06016 at 170.142 kb on + strand, within MPMX19_06016 at 170.142 kb on + strand, within MPMX19_06016 at 170.142 kb on + strand, within MPMX19_06016 at 170.142 kb on + strand, within MPMX19_06016 at 170.142 kb on + strand, within MPMX19_06016 at 170.142 kb on + strand, within MPMX19_06016 at 170.142 kb on + strand, within MPMX19_06016 at 170.142 kb on + strand, within MPMX19_06016 at 170.143 kb on - strand, within MPMX19_06016 at 170.143 kb on - strand, within MPMX19_06016 at 170.190 kb on + strand, within MPMX19_06016 at 170.190 kb on + strand, within MPMX19_06016 at 170.248 kb on - strand at 170.248 kb on - strand at 170.248 kb on - strand at 170.389 kb on + strand at 170.389 kb on + strand at 170.389 kb on + strand at 170.389 kb on + strand at 170.389 kb on + strand at 170.390 kb on - strand at 170.390 kb on - strand at 170.390 kb on - strand at 170.390 kb on - strand at 170.390 kb on - strand at 170.390 kb on - strand at 170.390 kb on - strand at 170.622 kb on - strand, within MPMX19_06017 at 170.801 kb on + strand, within MPMX19_06017 at 170.801 kb on + strand, within MPMX19_06017 at 170.801 kb on + strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.802 kb on - strand, within MPMX19_06017 at 170.897 kb on + strand, within MPMX19_06017 at 170.898 kb on - strand, within MPMX19_06017 at 170.898 kb on - strand, within MPMX19_06017 at 170.898 kb on - strand, within MPMX19_06017 at 170.898 kb on - strand, within MPMX19_06017 at 170.918 kb on + strand, within MPMX19_06017 at 170.918 kb on + strand, within MPMX19_06017 at 170.918 kb on + strand, within MPMX19_06017 at 170.919 kb on - strand, within MPMX19_06017 at 170.919 kb on - strand, within MPMX19_06017 at 170.919 kb on - strand, within MPMX19_06017 at 171.018 kb on - strand, within MPMX19_06017 at 171.018 kb on - strand, within MPMX19_06017 at 171.062 kb on + strand at 171.062 kb on + strand at 171.062 kb on + strand at 171.062 kb on + strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.063 kb on - strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.100 kb on + strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.101 kb on - strand at 171.261 kb on + strand, within MPMX19_06018
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 168,534 + +0.2 168,535 - +2.5 168,691 - -2.1 168,724 + -1.4 168,724 + -1.7 168,725 - +0.5 168,725 - -0.7 168,725 - +0.0 168,725 - -1.1 168,725 - +0.5 168,725 - -0.7 168,843 - -0.5 168,843 - -1.4 168,843 - -1.7 169,076 + MPMX19_06015 0.42 +0.6 169,076 + MPMX19_06015 0.42 -0.7 169,076 + MPMX19_06015 0.42 -0.2 169,076 + MPMX19_06015 0.42 -0.3 169,077 - MPMX19_06015 0.42 -1.7 169,077 - MPMX19_06015 0.42 -0.7 169,077 - MPMX19_06015 0.42 -0.1 169,077 - MPMX19_06015 0.42 +1.9 169,077 - MPMX19_06015 0.42 -1.1 169,077 - MPMX19_06015 0.42 -0.1 169,077 - MPMX19_06015 0.42 -0.8 169,077 - MPMX19_06015 0.42 -0.7 169,077 - MPMX19_06015 0.42 -0.7 169,077 - MPMX19_06015 0.42 -1.7 169,077 - MPMX19_06015 0.42 -0.1 169,077 - MPMX19_06015 0.42 +0.3 169,077 - MPMX19_06015 0.42 +0.5 169,356 - MPMX19_06015 0.82 -0.4 169,454 + -1.7 169,454 + +0.3 169,454 + +0.5 169,454 + +0.9 169,454 + -1.4 169,454 + +0.9 169,454 + -1.7 169,454 + -0.9 169,454 + -1.3 169,454 + -0.9 169,454 + -1.6 169,454 + +0.9 169,454 + +0.6 169,454 + -1.7 169,454 + -0.7 169,454 + +0.5 169,454 + -0.4 169,454 + +0.4 169,454 + +0.9 169,455 - -1.0 169,455 - +0.9 169,455 - +1.3 169,455 - -0.4 169,455 - -0.1 169,455 - -0.7 169,455 - +0.3 169,455 - -0.0 169,455 - -0.7 169,455 - -1.1 169,455 - +1.6 169,455 - -0.1 169,455 - -0.3 169,455 - -0.6 169,455 - -1.4 169,455 - -0.3 169,455 - -0.1 169,599 + MPMX19_06016 0.14 -0.7 169,599 + MPMX19_06016 0.14 +0.2 169,599 + MPMX19_06016 0.14 -1.1 169,599 + MPMX19_06016 0.14 -0.7 169,599 + MPMX19_06016 0.14 -0.4 169,599 + MPMX19_06016 0.14 -1.9 169,599 + MPMX19_06016 0.14 -0.1 169,599 + MPMX19_06016 0.14 -1.7 169,599 + MPMX19_06016 0.14 -0.4 169,812 + MPMX19_06016 0.40 +0.9 169,813 - MPMX19_06016 0.40 +0.3 169,813 - MPMX19_06016 0.40 -1.1 169,813 - MPMX19_06016 0.40 -0.4 169,813 - MPMX19_06016 0.40 +0.3 169,911 + MPMX19_06016 0.52 -0.7 169,911 + MPMX19_06016 0.52 -0.8 169,911 + MPMX19_06016 0.52 +0.5 169,911 + MPMX19_06016 0.52 -0.9 169,911 + MPMX19_06016 0.52 -1.1 169,911 + MPMX19_06016 0.52 +0.3 169,911 + MPMX19_06016 0.52 -0.1 169,911 + MPMX19_06016 0.52 -1.4 169,911 + MPMX19_06016 0.52 +0.2 169,911 + MPMX19_06016 0.52 +0.0 169,912 - MPMX19_06016 0.52 +0.9 169,912 - MPMX19_06016 0.52 +0.9 169,912 - MPMX19_06016 0.52 -0.3 169,912 - MPMX19_06016 0.52 -1.4 169,912 - MPMX19_06016 0.52 -0.1 169,912 - MPMX19_06016 0.52 -0.4 169,912 - MPMX19_06016 0.52 -1.2 169,912 - MPMX19_06016 0.52 +0.4 170,040 + MPMX19_06016 0.67 -0.4 170,040 + MPMX19_06016 0.67 +1.9 170,041 - MPMX19_06016 0.67 +0.9 170,049 + MPMX19_06016 0.68 -0.1 170,070 + MPMX19_06016 0.71 -0.1 170,070 + MPMX19_06016 0.71 -0.4 170,071 - MPMX19_06016 0.71 -1.1 170,071 - MPMX19_06016 0.71 -0.7 170,071 - MPMX19_06016 0.71 -1.7 170,106 + MPMX19_06016 0.75 +0.6 170,106 + MPMX19_06016 0.75 +0.6 170,106 + MPMX19_06016 0.75 -2.6 170,106 + MPMX19_06016 0.75 +1.3 170,106 + MPMX19_06016 0.75 -0.3 170,106 + MPMX19_06016 0.75 +0.6 170,106 + MPMX19_06016 0.75 -1.9 170,106 + MPMX19_06016 0.75 -0.7 170,106 + MPMX19_06016 0.75 -0.9 170,106 + MPMX19_06016 0.75 -0.5 170,106 + MPMX19_06016 0.75 -0.2 170,107 - MPMX19_06016 0.75 +0.7 170,107 - MPMX19_06016 0.75 +0.8 170,107 - MPMX19_06016 0.75 -1.1 170,107 - MPMX19_06016 0.75 +0.3 170,107 - MPMX19_06016 0.75 -0.9 170,142 + MPMX19_06016 0.80 -2.5 170,142 + MPMX19_06016 0.80 +0.2 170,142 + MPMX19_06016 0.80 -1.6 170,142 + MPMX19_06016 0.80 +2.5 170,142 + MPMX19_06016 0.80 -1.2 170,142 + MPMX19_06016 0.80 -2.6 170,142 + MPMX19_06016 0.80 +0.9 170,142 + MPMX19_06016 0.80 -0.7 170,142 + MPMX19_06016 0.80 -1.7 170,143 - MPMX19_06016 0.80 +1.2 170,143 - MPMX19_06016 0.80 +1.2 170,190 + MPMX19_06016 0.85 +0.5 170,190 + MPMX19_06016 0.85 -0.4 170,248 - -1.1 170,248 - -1.1 170,248 - -1.8 170,389 + -0.9 170,389 + -1.7 170,389 + -1.9 170,389 + -0.3 170,389 + -0.1 170,390 - -1.9 170,390 - -0.3 170,390 - -0.3 170,390 - -0.3 170,390 - -0.7 170,390 - +1.2 170,390 - -0.7 170,622 - MPMX19_06017 0.27 -1.3 170,801 + MPMX19_06017 0.55 -1.9 170,801 + MPMX19_06017 0.55 -1.4 170,801 + MPMX19_06017 0.55 -0.3 170,802 - MPMX19_06017 0.56 +0.7 170,802 - MPMX19_06017 0.56 -0.1 170,802 - MPMX19_06017 0.56 -1.3 170,802 - MPMX19_06017 0.56 -0.1 170,802 - MPMX19_06017 0.56 -0.7 170,802 - MPMX19_06017 0.56 -0.5 170,802 - MPMX19_06017 0.56 -0.6 170,802 - MPMX19_06017 0.56 -0.9 170,802 - MPMX19_06017 0.56 -1.3 170,802 - MPMX19_06017 0.56 +0.3 170,802 - MPMX19_06017 0.56 -0.7 170,802 - MPMX19_06017 0.56 -0.3 170,897 + MPMX19_06017 0.71 -1.8 170,898 - MPMX19_06017 0.71 -1.1 170,898 - MPMX19_06017 0.71 -1.4 170,898 - MPMX19_06017 0.71 +0.6 170,898 - MPMX19_06017 0.71 +0.6 170,918 + MPMX19_06017 0.74 -0.3 170,918 + MPMX19_06017 0.74 -1.1 170,918 + MPMX19_06017 0.74 +0.6 170,919 - MPMX19_06017 0.74 -1.4 170,919 - MPMX19_06017 0.74 -0.2 170,919 - MPMX19_06017 0.74 -0.5 171,018 - MPMX19_06017 0.90 -2.3 171,018 - MPMX19_06017 0.90 -0.6 171,062 + -1.7 171,062 + -0.7 171,062 + +0.9 171,062 + -1.1 171,063 - -1.7 171,063 - +0.1 171,063 - -0.1 171,063 - -1.0 171,063 - -1.2 171,063 - -0.7 171,063 - +0.4 171,100 + +0.4 171,100 + -0.6 171,100 + -0.2 171,100 + -1.9 171,100 + -1.8 171,100 + -0.4 171,100 + -1.2 171,100 + -0.8 171,100 + -1.4 171,100 + -1.9 171,100 + -1.9 171,100 + +0.5 171,100 + -0.1 171,100 + -2.1 171,100 + -0.2 171,101 - +0.1 171,101 - -0.8 171,101 - +0.9 171,101 - -1.4 171,101 - -0.6 171,101 - -0.1 171,101 - +0.9 171,101 - -2.0 171,101 - -1.6 171,101 - +0.9 171,261 + MPMX19_06018 0.27 -0.1
Or see this region's nucleotide sequence