Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06000 and MPMX19_06001 are separated by 265 nucleotides MPMX19_06001 and MPMX19_06002 are separated by 397 nucleotides
MPMX19_06000: MPMX19_06000 - Fructokinase, at 154,146 to 155,135
_06000
MPMX19_06001: MPMX19_06001 - hypothetical protein, at 155,401 to 156,162
_06001
MPMX19_06002: MPMX19_06002 - High-affinity branched-chain amino acid transport system permease protein LivH, at 156,560 to 157,465
_06002
Position (kb) 155
156
157 Strain fitness (log2 ratio) -2
-1
0
1
2 at 154.549 kb on + strand, within MPMX19_06000 at 154.549 kb on + strand, within MPMX19_06000 at 154.549 kb on + strand, within MPMX19_06000 at 154.549 kb on + strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.969 kb on + strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 155.087 kb on - strand at 155.173 kb on - strand at 155.173 kb on - strand at 155.379 kb on + strand at 155.379 kb on + strand at 155.581 kb on + strand, within MPMX19_06001 at 155.581 kb on + strand, within MPMX19_06001 at 155.581 kb on + strand, within MPMX19_06001 at 155.581 kb on + strand, within MPMX19_06001 at 155.581 kb on + strand, within MPMX19_06001 at 155.582 kb on - strand, within MPMX19_06001 at 155.582 kb on - strand, within MPMX19_06001 at 155.582 kb on - strand, within MPMX19_06001 at 155.758 kb on + strand, within MPMX19_06001 at 155.758 kb on + strand, within MPMX19_06001 at 155.758 kb on + strand, within MPMX19_06001 at 155.758 kb on + strand, within MPMX19_06001 at 155.759 kb on - strand, within MPMX19_06001 at 155.759 kb on - strand, within MPMX19_06001 at 155.866 kb on + strand, within MPMX19_06001 at 155.867 kb on - strand, within MPMX19_06001 at 155.867 kb on - strand, within MPMX19_06001 at 156.301 kb on + strand at 156.301 kb on + strand at 156.301 kb on + strand at 156.302 kb on - strand at 156.304 kb on + strand at 156.397 kb on + strand at 156.397 kb on + strand at 156.398 kb on - strand at 156.398 kb on - strand at 156.398 kb on - strand at 156.398 kb on - strand at 156.398 kb on - strand at 156.560 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 154,549 + MPMX19_06000 0.41 +0.9 154,549 + MPMX19_06000 0.41 +0.4 154,549 + MPMX19_06000 0.41 -0.1 154,549 + MPMX19_06000 0.41 -0.1 154,550 - MPMX19_06000 0.41 +0.0 154,550 - MPMX19_06000 0.41 -0.1 154,550 - MPMX19_06000 0.41 -0.8 154,550 - MPMX19_06000 0.41 -1.7 154,550 - MPMX19_06000 0.41 -1.7 154,550 - MPMX19_06000 0.41 -1.1 154,550 - MPMX19_06000 0.41 -0.1 154,550 - MPMX19_06000 0.41 +0.9 154,550 - MPMX19_06000 0.41 -0.1 154,969 + MPMX19_06000 0.83 -0.5 154,970 - MPMX19_06000 0.83 +0.4 154,970 - MPMX19_06000 0.83 -0.7 154,970 - MPMX19_06000 0.83 -0.9 154,970 - MPMX19_06000 0.83 -0.1 154,970 - MPMX19_06000 0.83 -1.6 154,970 - MPMX19_06000 0.83 -0.4 154,970 - MPMX19_06000 0.83 -0.2 154,970 - MPMX19_06000 0.83 -0.1 155,087 - -0.5 155,173 - +0.3 155,173 - -0.6 155,379 + -1.1 155,379 + +0.3 155,581 + MPMX19_06001 0.24 -1.1 155,581 + MPMX19_06001 0.24 -1.6 155,581 + MPMX19_06001 0.24 -2.1 155,581 + MPMX19_06001 0.24 -1.6 155,581 + MPMX19_06001 0.24 -1.1 155,582 - MPMX19_06001 0.24 -0.7 155,582 - MPMX19_06001 0.24 -0.7 155,582 - MPMX19_06001 0.24 -0.9 155,758 + MPMX19_06001 0.47 -0.7 155,758 + MPMX19_06001 0.47 -1.1 155,758 + MPMX19_06001 0.47 -0.7 155,758 + MPMX19_06001 0.47 -2.1 155,759 - MPMX19_06001 0.47 -1.1 155,759 - MPMX19_06001 0.47 -0.7 155,866 + MPMX19_06001 0.61 -1.7 155,867 - MPMX19_06001 0.61 -0.7 155,867 - MPMX19_06001 0.61 -1.9 156,301 + +0.3 156,301 + +0.2 156,301 + -0.3 156,302 - -1.1 156,304 + -1.4 156,397 + -0.9 156,397 + -1.6 156,398 - -0.7 156,398 - -1.4 156,398 - -1.4 156,398 - +1.9 156,398 - -0.6 156,560 - -1.9
Or see this region's nucleotide sequence