Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05952 and MPMX19_05953 are separated by 89 nucleotides MPMX19_05953 and MPMX19_05954 are separated by 87 nucleotides MPMX19_05954 and MPMX19_05955 are separated by 207 nucleotides
MPMX19_05952: MPMX19_05952 - hypothetical protein, at 99,275 to 100,270
_05952
MPMX19_05953: MPMX19_05953 - hypothetical protein, at 100,360 to 100,593
_05953
MPMX19_05954: MPMX19_05954 - hypothetical protein, at 100,681 to 103,374
_05954
MPMX19_05955: MPMX19_05955 - Riboflavin transporter, at 103,582 to 104,520
_05955
Position (kb) 100
101
102
103
104 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 99.882 kb on - strand, within MPMX19_05952 at 99.882 kb on - strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.013 kb on + strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.014 kb on - strand, within MPMX19_05952 at 100.097 kb on + strand, within MPMX19_05952 at 100.097 kb on + strand, within MPMX19_05952 at 100.097 kb on + strand, within MPMX19_05952 at 100.098 kb on - strand, within MPMX19_05952 at 100.098 kb on - strand, within MPMX19_05952 at 100.098 kb on - strand, within MPMX19_05952 at 100.660 kb on + strand at 100.661 kb on - strand at 100.661 kb on - strand at 100.709 kb on + strand at 100.709 kb on + strand at 100.709 kb on + strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.710 kb on - strand at 100.737 kb on - strand at 100.835 kb on + strand at 101.882 kb on + strand, within MPMX19_05954 at 101.882 kb on + strand, within MPMX19_05954 at 101.882 kb on + strand, within MPMX19_05954 at 101.883 kb on - strand, within MPMX19_05954 at 101.883 kb on - strand, within MPMX19_05954 at 101.883 kb on - strand, within MPMX19_05954 at 101.883 kb on - strand, within MPMX19_05954 at 101.883 kb on - strand, within MPMX19_05954 at 101.883 kb on - strand, within MPMX19_05954 at 102.222 kb on + strand, within MPMX19_05954 at 102.222 kb on + strand, within MPMX19_05954 at 102.223 kb on - strand, within MPMX19_05954 at 102.223 kb on - strand, within MPMX19_05954 at 102.305 kb on + strand, within MPMX19_05954 at 102.323 kb on + strand, within MPMX19_05954 at 102.323 kb on + strand, within MPMX19_05954 at 102.323 kb on + strand, within MPMX19_05954 at 102.324 kb on - strand, within MPMX19_05954 at 102.324 kb on - strand, within MPMX19_05954 at 102.324 kb on - strand, within MPMX19_05954 at 102.324 kb on - strand, within MPMX19_05954 at 102.324 kb on - strand, within MPMX19_05954 at 102.324 kb on - strand, within MPMX19_05954 at 102.720 kb on - strand, within MPMX19_05954 at 102.878 kb on + strand, within MPMX19_05954 at 102.878 kb on + strand, within MPMX19_05954 at 102.879 kb on - strand, within MPMX19_05954 at 102.879 kb on - strand, within MPMX19_05954 at 102.879 kb on - strand, within MPMX19_05954 at 103.117 kb on + strand at 103.117 kb on + strand at 103.117 kb on + strand at 103.117 kb on + strand at 103.117 kb on + strand at 103.117 kb on + strand at 103.117 kb on + strand at 103.118 kb on - strand at 103.118 kb on - strand at 103.118 kb on - strand at 103.118 kb on - strand at 103.393 kb on + strand at 103.393 kb on + strand at 103.394 kb on - strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.456 kb on - strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.457 kb on + strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.458 kb on - strand at 103.509 kb on + strand at 103.509 kb on + strand at 103.509 kb on + strand at 103.509 kb on + strand at 103.510 kb on - strand at 103.510 kb on - strand at 103.510 kb on - strand at 103.510 kb on - strand at 103.538 kb on + strand at 103.538 kb on + strand at 103.539 kb on - strand at 103.539 kb on - strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.652 kb on + strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.653 kb on - strand at 103.757 kb on + strand, within MPMX19_05955 at 103.757 kb on + strand, within MPMX19_05955 at 103.757 kb on + strand, within MPMX19_05955 at 103.757 kb on + strand, within MPMX19_05955 at 103.757 kb on + strand, within MPMX19_05955 at 103.758 kb on - strand, within MPMX19_05955 at 103.758 kb on - strand, within MPMX19_05955 at 103.758 kb on - strand, within MPMX19_05955 at 103.758 kb on - strand, within MPMX19_05955 at 103.796 kb on + strand, within MPMX19_05955 at 103.797 kb on - strand, within MPMX19_05955 at 103.797 kb on - strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.934 kb on + strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 103.935 kb on - strand, within MPMX19_05955 at 104.265 kb on + strand, within MPMX19_05955 at 104.266 kb on - strand, within MPMX19_05955 at 104.266 kb on - strand, within MPMX19_05955 at 104.280 kb on - strand, within MPMX19_05955 at 104.280 kb on - strand, within MPMX19_05955
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 99,882 - MPMX19_05952 0.61 -2.5 99,882 - MPMX19_05952 0.61 -1.3 100,013 + MPMX19_05952 0.74 +0.0 100,013 + MPMX19_05952 0.74 +0.3 100,013 + MPMX19_05952 0.74 -0.1 100,013 + MPMX19_05952 0.74 -0.9 100,013 + MPMX19_05952 0.74 -1.4 100,013 + MPMX19_05952 0.74 -1.0 100,013 + MPMX19_05952 0.74 +0.1 100,013 + MPMX19_05952 0.74 +0.6 100,013 + MPMX19_05952 0.74 -1.4 100,013 + MPMX19_05952 0.74 -0.1 100,014 - MPMX19_05952 0.74 +0.9 100,014 - MPMX19_05952 0.74 -0.4 100,014 - MPMX19_05952 0.74 -0.1 100,014 - MPMX19_05952 0.74 -1.1 100,014 - MPMX19_05952 0.74 -0.7 100,014 - MPMX19_05952 0.74 -0.7 100,014 - MPMX19_05952 0.74 -0.9 100,097 + MPMX19_05952 0.83 -1.7 100,097 + MPMX19_05952 0.83 -0.1 100,097 + MPMX19_05952 0.83 -0.1 100,098 - MPMX19_05952 0.83 -1.9 100,098 - MPMX19_05952 0.83 -1.6 100,098 - MPMX19_05952 0.83 -1.6 100,660 + -1.7 100,661 - -1.4 100,661 - -1.9 100,709 + -1.0 100,709 + -1.4 100,709 + -1.7 100,710 - -0.7 100,710 - -1.7 100,710 - -1.9 100,710 - -2.4 100,710 - -1.4 100,710 - -1.7 100,737 - -2.1 100,835 + -3.1 101,882 + MPMX19_05954 0.45 -1.4 101,882 + MPMX19_05954 0.45 -0.4 101,882 + MPMX19_05954 0.45 -1.7 101,883 - MPMX19_05954 0.45 -2.6 101,883 - MPMX19_05954 0.45 -1.1 101,883 - MPMX19_05954 0.45 -1.4 101,883 - MPMX19_05954 0.45 -1.8 101,883 - MPMX19_05954 0.45 -1.1 101,883 - MPMX19_05954 0.45 -0.7 102,222 + MPMX19_05954 0.57 -2.7 102,222 + MPMX19_05954 0.57 -1.4 102,223 - MPMX19_05954 0.57 -1.4 102,223 - MPMX19_05954 0.57 -2.6 102,305 + MPMX19_05954 0.60 -2.1 102,323 + MPMX19_05954 0.61 -1.4 102,323 + MPMX19_05954 0.61 -2.4 102,323 + MPMX19_05954 0.61 -1.4 102,324 - MPMX19_05954 0.61 -0.1 102,324 - MPMX19_05954 0.61 -0.7 102,324 - MPMX19_05954 0.61 -0.7 102,324 - MPMX19_05954 0.61 -1.3 102,324 - MPMX19_05954 0.61 -0.7 102,324 - MPMX19_05954 0.61 -3.0 102,720 - MPMX19_05954 0.76 -1.4 102,878 + MPMX19_05954 0.82 -1.0 102,878 + MPMX19_05954 0.82 -2.9 102,879 - MPMX19_05954 0.82 -2.6 102,879 - MPMX19_05954 0.82 -1.4 102,879 - MPMX19_05954 0.82 -1.3 103,117 + -1.1 103,117 + -1.1 103,117 + -0.7 103,117 + -1.7 103,117 + -2.1 103,117 + -1.1 103,117 + -2.9 103,118 - -1.1 103,118 - -2.1 103,118 - -1.6 103,118 - -2.6 103,393 + -0.3 103,393 + -0.1 103,394 - +0.6 103,455 + -1.6 103,455 + -1.7 103,455 + -2.7 103,455 + +0.2 103,455 + -2.3 103,455 + -0.7 103,455 + -2.3 103,455 + -2.1 103,455 + -2.3 103,455 + -1.6 103,455 + -0.9 103,455 + -2.1 103,455 + -1.5 103,455 + -4.0 103,455 + -2.6 103,455 + -1.1 103,455 + -0.9 103,455 + -2.4 103,455 + -1.4 103,455 + -0.7 103,455 + -1.0 103,455 + -0.4 103,456 - +0.2 103,456 - +1.6 103,456 - -0.7 103,456 - -1.4 103,456 - -0.9 103,456 - -0.1 103,456 - -0.7 103,456 - -0.1 103,456 - -2.1 103,456 - -0.5 103,456 - -0.5 103,456 - -1.4 103,456 - -0.6 103,456 - +2.2 103,456 - -0.1 103,456 - -1.7 103,456 - -3.0 103,456 - +0.6 103,456 - -0.7 103,456 - +1.2 103,456 - -0.7 103,456 - -1.9 103,457 + -0.9 103,457 + -0.4 103,457 + -1.1 103,457 + -0.4 103,457 + -1.4 103,457 + -1.3 103,457 + -2.1 103,457 + +0.4 103,458 - -0.7 103,458 - -0.7 103,458 - -0.1 103,458 - -0.7 103,458 - +0.9 103,458 - -2.3 103,458 - +1.6 103,458 - +0.7 103,458 - +0.9 103,458 - +0.2 103,458 - +0.1 103,458 - -2.3 103,509 + -1.4 103,509 + -2.0 103,509 + +0.9 103,509 + -0.7 103,510 - -1.1 103,510 - +0.3 103,510 - -0.1 103,510 - -0.3 103,538 + -2.1 103,538 + -1.1 103,539 - -0.4 103,539 - -1.1 103,652 + -0.8 103,652 + -1.4 103,652 + -1.4 103,652 + +0.2 103,652 + -0.3 103,652 + -1.1 103,652 + +0.5 103,652 + -1.1 103,652 + -0.1 103,652 + -0.1 103,652 + -1.7 103,652 + -0.1 103,652 + -0.2 103,653 - -1.4 103,653 - -0.6 103,653 - -0.6 103,653 - +0.2 103,653 - +0.9 103,653 - +0.9 103,653 - -0.1 103,653 - -0.9 103,653 - -0.5 103,653 - +0.1 103,653 - +0.9 103,653 - -1.4 103,653 - -0.1 103,757 + MPMX19_05955 0.19 +0.4 103,757 + MPMX19_05955 0.19 -0.4 103,757 + MPMX19_05955 0.19 -2.4 103,757 + MPMX19_05955 0.19 -0.9 103,757 + MPMX19_05955 0.19 -0.5 103,758 - MPMX19_05955 0.19 -0.7 103,758 - MPMX19_05955 0.19 +0.9 103,758 - MPMX19_05955 0.19 +0.9 103,758 - MPMX19_05955 0.19 -0.7 103,796 + MPMX19_05955 0.23 -1.0 103,797 - MPMX19_05955 0.23 -1.1 103,797 - MPMX19_05955 0.23 -2.4 103,934 + MPMX19_05955 0.37 -0.9 103,934 + MPMX19_05955 0.37 -0.1 103,934 + MPMX19_05955 0.37 +0.1 103,934 + MPMX19_05955 0.37 -1.0 103,934 + MPMX19_05955 0.37 -1.4 103,934 + MPMX19_05955 0.37 -1.4 103,934 + MPMX19_05955 0.37 -0.7 103,934 + MPMX19_05955 0.37 -1.1 103,934 + MPMX19_05955 0.37 -0.1 103,934 + MPMX19_05955 0.37 +0.2 103,935 - MPMX19_05955 0.38 +1.1 103,935 - MPMX19_05955 0.38 -1.9 103,935 - MPMX19_05955 0.38 -1.1 103,935 - MPMX19_05955 0.38 -0.9 103,935 - MPMX19_05955 0.38 +0.2 103,935 - MPMX19_05955 0.38 +0.3 103,935 - MPMX19_05955 0.38 -0.4 104,265 + MPMX19_05955 0.73 -0.6 104,266 - MPMX19_05955 0.73 -0.7 104,266 - MPMX19_05955 0.73 -0.9 104,280 - MPMX19_05955 0.74 -0.4 104,280 - MPMX19_05955 0.74 -0.1
Or see this region's nucleotide sequence