Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05949 and MPMX19_05950 are separated by 628 nucleotides MPMX19_05950 and MPMX19_05951 are separated by 53 nucleotides
MPMX19_05949: MPMX19_05949 - Isoquinoline 1-oxidoreductase subunit beta, at 93,751 to 96,006
_05949
MPMX19_05950: MPMX19_05950 - G/U mismatch-specific DNA glycosylase, at 96,635 to 97,219
_05950
MPMX19_05951: MPMX19_05951 - Oxygen-dependent choline dehydrogenase, at 97,273 to 98,979
_05951
Position (kb) 96
97
98 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.818 kb on + strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 95.819 kb on - strand at 96.004 kb on + strand at 96.004 kb on + strand at 96.004 kb on + strand at 96.004 kb on + strand at 96.004 kb on + strand at 96.004 kb on + strand at 96.004 kb on + strand at 96.005 kb on - strand at 96.005 kb on - strand at 96.813 kb on + strand, within MPMX19_05950 at 96.813 kb on + strand, within MPMX19_05950 at 96.813 kb on + strand, within MPMX19_05950 at 96.813 kb on + strand, within MPMX19_05950 at 96.814 kb on - strand, within MPMX19_05950 at 96.814 kb on - strand, within MPMX19_05950 at 96.814 kb on - strand, within MPMX19_05950 at 96.814 kb on - strand, within MPMX19_05950 at 96.814 kb on - strand, within MPMX19_05950 at 96.814 kb on - strand, within MPMX19_05950 at 96.814 kb on - strand, within MPMX19_05950 at 96.831 kb on + strand, within MPMX19_05950 at 96.831 kb on + strand, within MPMX19_05950 at 96.831 kb on + strand, within MPMX19_05950 at 96.831 kb on + strand, within MPMX19_05950 at 96.832 kb on - strand, within MPMX19_05950 at 96.832 kb on - strand, within MPMX19_05950 at 96.832 kb on - strand, within MPMX19_05950 at 96.832 kb on - strand, within MPMX19_05950 at 96.832 kb on - strand, within MPMX19_05950 at 96.832 kb on - strand, within MPMX19_05950 at 96.832 kb on - strand, within MPMX19_05950 at 96.832 kb on - strand, within MPMX19_05950 at 96.996 kb on + strand, within MPMX19_05950 at 97.059 kb on + strand, within MPMX19_05950 at 97.059 kb on + strand, within MPMX19_05950 at 97.059 kb on + strand, within MPMX19_05950 at 97.059 kb on + strand, within MPMX19_05950 at 97.059 kb on + strand, within MPMX19_05950 at 97.059 kb on + strand, within MPMX19_05950 at 97.059 kb on + strand, within MPMX19_05950 at 97.059 kb on + strand, within MPMX19_05950 at 97.060 kb on - strand, within MPMX19_05950 at 97.060 kb on - strand, within MPMX19_05950 at 97.060 kb on - strand, within MPMX19_05950 at 97.060 kb on - strand, within MPMX19_05950 at 97.060 kb on - strand, within MPMX19_05950 at 97.060 kb on - strand, within MPMX19_05950 at 97.178 kb on + strand at 97.179 kb on - strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.252 kb on + strand at 97.253 kb on - strand at 97.253 kb on - strand at 97.253 kb on - strand at 97.253 kb on - strand at 97.253 kb on - strand at 97.253 kb on - strand at 97.253 kb on - strand at 97.253 kb on - strand at 97.253 kb on - strand at 97.253 kb on - strand at 97.253 kb on - strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.254 kb on + strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.255 kb on - strand at 97.427 kb on + strand at 97.427 kb on + strand at 97.427 kb on + strand at 97.427 kb on + strand at 97.427 kb on + strand at 97.428 kb on - strand at 97.428 kb on - strand at 97.428 kb on - strand at 97.428 kb on - strand at 97.428 kb on - strand at 97.428 kb on - strand at 97.428 kb on - strand at 97.428 kb on - strand at 97.428 kb on - strand at 97.428 kb on - strand at 97.509 kb on + strand, within MPMX19_05951 at 97.509 kb on + strand, within MPMX19_05951 at 97.509 kb on + strand, within MPMX19_05951 at 97.509 kb on + strand, within MPMX19_05951 at 97.509 kb on + strand, within MPMX19_05951 at 97.510 kb on - strand, within MPMX19_05951 at 97.510 kb on - strand, within MPMX19_05951 at 97.510 kb on - strand, within MPMX19_05951 at 97.510 kb on - strand, within MPMX19_05951 at 97.510 kb on - strand, within MPMX19_05951 at 97.510 kb on - strand, within MPMX19_05951 at 97.510 kb on - strand, within MPMX19_05951 at 97.510 kb on - strand, within MPMX19_05951 at 97.552 kb on + strand, within MPMX19_05951 at 97.552 kb on + strand, within MPMX19_05951 at 97.552 kb on + strand, within MPMX19_05951 at 97.552 kb on + strand, within MPMX19_05951 at 97.552 kb on + strand, within MPMX19_05951 at 97.553 kb on - strand, within MPMX19_05951 at 97.553 kb on - strand, within MPMX19_05951 at 97.553 kb on - strand, within MPMX19_05951 at 97.553 kb on - strand, within MPMX19_05951 at 97.553 kb on - strand, within MPMX19_05951 at 97.982 kb on + strand, within MPMX19_05951 at 97.982 kb on + strand, within MPMX19_05951 at 97.983 kb on - strand, within MPMX19_05951 at 97.983 kb on - strand, within MPMX19_05951 at 97.983 kb on - strand, within MPMX19_05951 at 97.983 kb on - strand, within MPMX19_05951 at 97.983 kb on - strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.997 kb on + strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 97.998 kb on - strand, within MPMX19_05951 at 98.117 kb on + strand, within MPMX19_05951 at 98.117 kb on + strand, within MPMX19_05951 at 98.118 kb on - strand, within MPMX19_05951 at 98.118 kb on - strand, within MPMX19_05951 at 98.118 kb on - strand, within MPMX19_05951 at 98.118 kb on - strand, within MPMX19_05951 at 98.118 kb on - strand, within MPMX19_05951 at 98.118 kb on - strand, within MPMX19_05951 at 98.118 kb on - strand, within MPMX19_05951 at 98.189 kb on + strand, within MPMX19_05951 at 98.189 kb on + strand, within MPMX19_05951 at 98.189 kb on + strand, within MPMX19_05951 at 98.190 kb on - strand, within MPMX19_05951
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 95,818 + +0.7 95,818 + +0.2 95,818 + +0.6 95,818 + +0.9 95,818 + -2.4 95,818 + +0.2 95,818 + +1.1 95,818 + +1.1 95,818 + -1.4 95,818 + +0.6 95,818 + +0.0 95,818 + -0.7 95,818 + +0.2 95,818 + -0.4 95,818 + -0.4 95,818 + -0.4 95,818 + +0.9 95,818 + +0.6 95,818 + +2.5 95,819 - -0.4 95,819 - -0.1 95,819 - -0.7 95,819 - +0.0 95,819 - +1.3 95,819 - -1.1 95,819 - -1.4 95,819 - -0.4 95,819 - -1.7 95,819 - +0.8 95,819 - -0.5 95,819 - -0.1 95,819 - -0.5 95,819 - -1.4 95,819 - -0.7 95,819 - -1.1 95,819 - +0.2 95,819 - -1.4 95,819 - -0.0 95,819 - -0.4 95,819 - -0.7 95,819 - -0.4 95,819 - -0.6 96,004 + -1.3 96,004 + -0.6 96,004 + -0.7 96,004 + -1.9 96,004 + -1.4 96,004 + +0.9 96,004 + -1.9 96,005 - -1.1 96,005 - +1.2 96,813 + MPMX19_05950 0.30 -0.1 96,813 + MPMX19_05950 0.30 -1.7 96,813 + MPMX19_05950 0.30 -0.4 96,813 + MPMX19_05950 0.30 +0.7 96,814 - MPMX19_05950 0.31 -1.1 96,814 - MPMX19_05950 0.31 -0.1 96,814 - MPMX19_05950 0.31 +0.9 96,814 - MPMX19_05950 0.31 +0.1 96,814 - MPMX19_05950 0.31 -0.1 96,814 - MPMX19_05950 0.31 -1.3 96,814 - MPMX19_05950 0.31 +0.6 96,831 + MPMX19_05950 0.34 -0.7 96,831 + MPMX19_05950 0.34 -0.4 96,831 + MPMX19_05950 0.34 -0.3 96,831 + MPMX19_05950 0.34 +0.9 96,832 - MPMX19_05950 0.34 -0.9 96,832 - MPMX19_05950 0.34 -0.8 96,832 - MPMX19_05950 0.34 +0.3 96,832 - MPMX19_05950 0.34 -2.1 96,832 - MPMX19_05950 0.34 -0.1 96,832 - MPMX19_05950 0.34 -1.4 96,832 - MPMX19_05950 0.34 -0.5 96,832 - MPMX19_05950 0.34 -0.3 96,996 + MPMX19_05950 0.62 -2.3 97,059 + MPMX19_05950 0.72 -0.4 97,059 + MPMX19_05950 0.72 +1.0 97,059 + MPMX19_05950 0.72 -0.5 97,059 + MPMX19_05950 0.72 +0.9 97,059 + MPMX19_05950 0.72 -0.7 97,059 + MPMX19_05950 0.72 +0.5 97,059 + MPMX19_05950 0.72 -0.9 97,059 + MPMX19_05950 0.72 -1.4 97,060 - MPMX19_05950 0.73 +0.7 97,060 - MPMX19_05950 0.73 -2.3 97,060 - MPMX19_05950 0.73 +0.5 97,060 - MPMX19_05950 0.73 -1.7 97,060 - MPMX19_05950 0.73 -1.1 97,060 - MPMX19_05950 0.73 -1.1 97,178 + -0.1 97,179 - +0.2 97,252 + -0.4 97,252 + -0.3 97,252 + +0.2 97,252 + +0.9 97,252 + -0.5 97,252 + -1.0 97,252 + -2.2 97,252 + -1.6 97,252 + -1.7 97,252 + -0.1 97,252 + -0.7 97,252 + -1.1 97,253 - +0.5 97,253 - -1.3 97,253 - -0.9 97,253 - -2.1 97,253 - -0.4 97,253 - -0.0 97,253 - -1.4 97,253 - -1.8 97,253 - -2.4 97,253 - -0.7 97,253 - -0.4 97,254 + -0.1 97,254 + -1.4 97,254 + -1.4 97,254 + +0.6 97,254 + -0.6 97,254 + -0.6 97,254 + -0.9 97,254 + -2.1 97,254 + -1.0 97,254 + -0.4 97,254 + -0.4 97,254 + +0.9 97,254 + -0.7 97,254 + -1.4 97,254 + -1.1 97,254 + -0.3 97,254 + -1.4 97,254 + +2.2 97,254 + -0.7 97,254 + -0.4 97,254 + -0.3 97,254 + +0.6 97,254 + -2.3 97,254 + -0.1 97,254 + -0.3 97,254 + +0.6 97,254 + +1.9 97,254 + -1.1 97,254 + -0.4 97,255 - +0.2 97,255 - -2.1 97,255 - +0.7 97,255 - -0.1 97,255 - -0.3 97,255 - -0.4 97,255 - -0.5 97,255 - +0.9 97,255 - +0.9 97,255 - -0.8 97,255 - -0.1 97,255 - -0.7 97,255 - -1.1 97,255 - -2.1 97,255 - -1.9 97,255 - -0.3 97,255 - -0.6 97,255 - -0.3 97,255 - +0.9 97,255 - -1.7 97,427 + -0.7 97,427 + -0.8 97,427 + -1.8 97,427 + -0.3 97,427 + -2.3 97,428 - -0.1 97,428 - -1.5 97,428 - -1.1 97,428 - -0.4 97,428 - -1.4 97,428 - -0.2 97,428 - +0.1 97,428 - -0.7 97,428 - -0.4 97,428 - +0.0 97,509 + MPMX19_05951 0.14 -1.9 97,509 + MPMX19_05951 0.14 -0.8 97,509 + MPMX19_05951 0.14 +0.1 97,509 + MPMX19_05951 0.14 +0.4 97,509 + MPMX19_05951 0.14 -1.7 97,510 - MPMX19_05951 0.14 +0.5 97,510 - MPMX19_05951 0.14 -1.1 97,510 - MPMX19_05951 0.14 +0.3 97,510 - MPMX19_05951 0.14 +0.9 97,510 - MPMX19_05951 0.14 +0.2 97,510 - MPMX19_05951 0.14 +0.8 97,510 - MPMX19_05951 0.14 -0.1 97,510 - MPMX19_05951 0.14 -0.7 97,552 + MPMX19_05951 0.16 -0.7 97,552 + MPMX19_05951 0.16 +2.5 97,552 + MPMX19_05951 0.16 +0.5 97,552 + MPMX19_05951 0.16 -0.7 97,552 + MPMX19_05951 0.16 -0.2 97,553 - MPMX19_05951 0.16 -0.2 97,553 - MPMX19_05951 0.16 +1.3 97,553 - MPMX19_05951 0.16 +1.6 97,553 - MPMX19_05951 0.16 -0.9 97,553 - MPMX19_05951 0.16 -0.4 97,982 + MPMX19_05951 0.42 -1.0 97,982 + MPMX19_05951 0.42 -0.5 97,983 - MPMX19_05951 0.42 -0.7 97,983 - MPMX19_05951 0.42 -0.4 97,983 - MPMX19_05951 0.42 +1.2 97,983 - MPMX19_05951 0.42 -0.5 97,983 - MPMX19_05951 0.42 +0.9 97,997 + MPMX19_05951 0.42 -0.6 97,997 + MPMX19_05951 0.42 -1.1 97,997 + MPMX19_05951 0.42 -0.1 97,997 + MPMX19_05951 0.42 -0.5 97,997 + MPMX19_05951 0.42 +1.3 97,997 + MPMX19_05951 0.42 -0.3 97,997 + MPMX19_05951 0.42 -0.7 97,997 + MPMX19_05951 0.42 -0.7 97,997 + MPMX19_05951 0.42 -1.1 97,997 + MPMX19_05951 0.42 -0.1 97,997 + MPMX19_05951 0.42 +0.6 97,997 + MPMX19_05951 0.42 -1.3 97,998 - MPMX19_05951 0.42 -0.7 97,998 - MPMX19_05951 0.42 +0.2 97,998 - MPMX19_05951 0.42 -0.4 97,998 - MPMX19_05951 0.42 +0.3 97,998 - MPMX19_05951 0.42 -1.7 97,998 - MPMX19_05951 0.42 -2.9 97,998 - MPMX19_05951 0.42 +0.3 97,998 - MPMX19_05951 0.42 -1.4 97,998 - MPMX19_05951 0.42 -1.5 97,998 - MPMX19_05951 0.42 -1.7 97,998 - MPMX19_05951 0.42 -0.2 97,998 - MPMX19_05951 0.42 -1.3 97,998 - MPMX19_05951 0.42 -1.2 97,998 - MPMX19_05951 0.42 -0.3 97,998 - MPMX19_05951 0.42 -0.1 97,998 - MPMX19_05951 0.42 -0.1 97,998 - MPMX19_05951 0.42 -1.7 97,998 - MPMX19_05951 0.42 -2.6 98,117 + MPMX19_05951 0.49 +0.9 98,117 + MPMX19_05951 0.49 -0.1 98,118 - MPMX19_05951 0.50 -0.7 98,118 - MPMX19_05951 0.50 -1.4 98,118 - MPMX19_05951 0.50 -1.1 98,118 - MPMX19_05951 0.50 +2.2 98,118 - MPMX19_05951 0.50 -1.5 98,118 - MPMX19_05951 0.50 +0.6 98,118 - MPMX19_05951 0.50 -0.0 98,189 + MPMX19_05951 0.54 -2.7 98,189 + MPMX19_05951 0.54 -1.7 98,189 + MPMX19_05951 0.54 -0.1 98,190 - MPMX19_05951 0.54 -1.1
Or see this region's nucleotide sequence