Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05943

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	NF_with_fullN
				remove
87,286	+	MPMX19_05942	0.47	-0.7
87,286	+	MPMX19_05942	0.47	+0.0
87,286	+	MPMX19_05942	0.47	-0.5
87,286	+	MPMX19_05942	0.47	-0.5
87,286	+	MPMX19_05942	0.47	-0.4
87,286	+	MPMX19_05942	0.47	-0.6
87,286	+	MPMX19_05942	0.47	-1.7
87,286	+	MPMX19_05942	0.47	-1.2
87,286	+	MPMX19_05942	0.47	+0.0
87,286	+	MPMX19_05942	0.47	+0.3
87,286	+	MPMX19_05942	0.47	-0.1
87,286	+	MPMX19_05942	0.47	+0.3
87,286	+	MPMX19_05942	0.47	-1.2
87,286	+	MPMX19_05942	0.47	+0.0
87,286	+	MPMX19_05942	0.47	-1.6
87,286	+	MPMX19_05942	0.47	-0.1
87,286	+	MPMX19_05942	0.47	-0.7
87,286	+	MPMX19_05942	0.47	-1.4
87,286	+	MPMX19_05942	0.47	-0.9
87,286	+	MPMX19_05942	0.47	+0.5
87,286	+	MPMX19_05942	0.47	+0.9
87,286	+	MPMX19_05942	0.47	-0.5
87,286	+	MPMX19_05942	0.47	-0.7
87,287	-	MPMX19_05942	0.47	+0.4
87,287	-	MPMX19_05942	0.47	+0.4
87,287	-	MPMX19_05942	0.47	-0.7
87,287	-	MPMX19_05942	0.47	-1.1
87,287	-	MPMX19_05942	0.47	-0.7
87,287	-	MPMX19_05942	0.47	-2.4
87,287	-	MPMX19_05942	0.47	-0.7
87,287	-	MPMX19_05942	0.47	-0.7
87,287	-	MPMX19_05942	0.47	-0.1
87,287	-	MPMX19_05942	0.47	+0.9
87,287	-	MPMX19_05942	0.47	-2.4
87,287	-	MPMX19_05942	0.47	-0.1
87,287	-	MPMX19_05942	0.47	+0.1
87,289	+	MPMX19_05942	0.47	-0.1
87,289	+	MPMX19_05942	0.47	+0.3
87,289	+	MPMX19_05942	0.47	+0.4
87,289	+	MPMX19_05942	0.47	-3.6
87,289	+	MPMX19_05942	0.47	-0.6
87,289	+	MPMX19_05942	0.47	-0.2
87,289	+	MPMX19_05942	0.47	-1.4
87,289	+	MPMX19_05942	0.47	-2.2
87,289	+	MPMX19_05942	0.47	+0.9
87,289	+	MPMX19_05942	0.47	-1.4
87,290	-	MPMX19_05942	0.47	-1.3
87,290	-	MPMX19_05942	0.47	+0.9
87,290	-	MPMX19_05942	0.47	-1.4
87,290	-	MPMX19_05942	0.47	-1.6
87,290	-	MPMX19_05942	0.47	+0.9
87,290	-	MPMX19_05942	0.47	-0.1
87,290	-	MPMX19_05942	0.47	+0.9
87,290	-	MPMX19_05942	0.47	-0.7
87,290	-	MPMX19_05942	0.47	-0.1
87,290	-	MPMX19_05942	0.47	-0.1
87,290	-	MPMX19_05942	0.47	-0.9
87,290	-	MPMX19_05942	0.47	-1.4
87,290	-	MPMX19_05942	0.47	-0.7
87,290	-	MPMX19_05942	0.47	-1.0
87,290	-	MPMX19_05942	0.47	+0.3
87,343	+	MPMX19_05942	0.51	+0.6
87,343	+	MPMX19_05942	0.51	+0.3
87,343	+	MPMX19_05942	0.51	-0.7
87,343	+	MPMX19_05942	0.51	+0.2
87,343	+	MPMX19_05942	0.51	+0.9
87,344	-	MPMX19_05942	0.51	-1.1
87,344	-	MPMX19_05942	0.51	-0.5
87,344	-	MPMX19_05942	0.51	-0.5
87,344	-	MPMX19_05942	0.51	-0.6
87,344	-	MPMX19_05942	0.51	-1.9
87,344	-	MPMX19_05942	0.51	-0.4
87,344	-	MPMX19_05942	0.51	+0.6
87,526	+	MPMX19_05942	0.64	-0.7
87,526	+	MPMX19_05942	0.64	+0.3
87,526	+	MPMX19_05942	0.64	-0.2
87,526	+	MPMX19_05942	0.64	-0.1
87,526	+	MPMX19_05942	0.64	+0.2
87,526	+	MPMX19_05942	0.64	-0.7
87,526	+	MPMX19_05942	0.64	+0.5
87,527	-	MPMX19_05942	0.64	-1.1
87,527	-	MPMX19_05942	0.64	-0.1
87,527	-	MPMX19_05942	0.64	-0.1
87,527	-	MPMX19_05942	0.64	-0.1
87,527	-	MPMX19_05942	0.64	-1.1
87,718	+	MPMX19_05942	0.78	-0.1
87,742	+	MPMX19_05942	0.80	-1.7
87,742	+	MPMX19_05942	0.80	-0.1
87,743	-	MPMX19_05942	0.80	+0.9
87,743	-	MPMX19_05942	0.80	-1.1
87,743	-	MPMX19_05942	0.80	-0.4
87,743	-	MPMX19_05942	0.80	-0.4
87,877	+	MPMX19_05942	0.90	-1.0
87,877	+	MPMX19_05942	0.90	-0.9
87,877	+	MPMX19_05942	0.90	+0.5
87,877	+	MPMX19_05942	0.90	+0.9
87,877	+	MPMX19_05942	0.90	-0.1
87,877	+	MPMX19_05942	0.90	+1.3
87,878	-	MPMX19_05942	0.90	-1.7
87,878	-	MPMX19_05942	0.90	+0.9
87,878	-	MPMX19_05942	0.90	+0.2
87,878	-	MPMX19_05942	0.90	+0.4
87,910	+			+1.9
87,910	+			-0.7
87,910	+			+0.5
87,910	+			+1.4
87,911	-			-0.7
87,911	-			+0.9
87,911	-			+1.1
87,917	-			-0.7
87,928	+			+0.9
87,928	+			-0.3
87,928	+			-2.3
87,928	+			-0.9
87,928	+			+0.3
87,928	+			-1.1
88,060	+			-0.5
88,060	+			+0.7
88,061	-			-1.1
88,061	-			-0.5
88,061	-			-1.7
88,061	-			+0.7
88,184	-			+0.4
88,184	-			-1.4
88,184	-			-0.2
88,192	+			+0.0
88,192	+			-1.9
88,192	+			+0.4
88,192	+			-1.1
88,192	+			+0.6
88,192	+			+0.9
88,193	-			-0.7
88,193	-			-0.1
88,193	-			+0.1
88,193	-			+1.5
88,198	+			-0.6
88,198	+			-0.1
88,198	+			-1.3
88,198	+			-1.9
88,198	+			+0.9
88,198	+			-0.9
88,199	-			-0.7
88,199	-			-1.6
88,199	-			+0.3
88,199	-			-0.3
88,217	+			-0.1
88,217	+			+1.3
88,217	+			-0.5
88,218	-			-1.1
88,228	+			-0.3
88,229	-			-1.2
88,255	-			+3.2
88,270	+	MPMX19_05943	0.10	+0.9
88,271	-	MPMX19_05943	0.10	-1.4
88,294	+	MPMX19_05943	0.13	+0.5
88,294	+	MPMX19_05943	0.13	-1.3
88,294	+	MPMX19_05943	0.13	+0.9
88,294	+	MPMX19_05943	0.13	+0.9
88,294	+	MPMX19_05943	0.13	-0.7
88,294	+	MPMX19_05943	0.13	-0.9
88,294	+	MPMX19_05943	0.13	-1.1
88,294	+	MPMX19_05943	0.13	+0.6
88,294	+	MPMX19_05943	0.13	-0.4
88,294	+	MPMX19_05943	0.13	-0.3
88,294	+	MPMX19_05943	0.13	-1.3
88,294	+	MPMX19_05943	0.13	-0.4
88,294	+	MPMX19_05943	0.13	-0.9
88,294	+	MPMX19_05943	0.13	-1.9
88,294	+	MPMX19_05943	0.13	-0.1
88,294	+	MPMX19_05943	0.13	-0.9
88,294	+	MPMX19_05943	0.13	-0.1
88,295	-	MPMX19_05943	0.13	+0.3
88,295	-	MPMX19_05943	0.13	+0.0
88,295	-	MPMX19_05943	0.13	-0.9
88,295	-	MPMX19_05943	0.13	-1.1
88,295	-	MPMX19_05943	0.13	+0.3
88,295	-	MPMX19_05943	0.13	-1.2
88,295	-	MPMX19_05943	0.13	-1.0
88,295	-	MPMX19_05943	0.13	-0.9
88,295	-	MPMX19_05943	0.13	-1.1
88,295	-	MPMX19_05943	0.13	-1.4
88,295	-	MPMX19_05943	0.13	-0.1
88,295	-	MPMX19_05943	0.13	+0.3
88,295	-	MPMX19_05943	0.13	-1.0
88,295	-	MPMX19_05943	0.13	-0.5
88,295	-	MPMX19_05943	0.13	-0.1
88,295	-	MPMX19_05943	0.13	-1.1
88,295	-	MPMX19_05943	0.13	-0.4
88,779	+	MPMX19_05943	0.69	-0.7
88,780	-	MPMX19_05943	0.69	-0.6
88,780	-	MPMX19_05943	0.69	-2.1
89,061	+			-2.3
89,103	+			+0.2
89,104	-			-1.4
89,104	-			+0.3
89,104	-			-0.1
89,104	-			-0.1
89,104	-			+0.1
89,139	-			-1.1
89,139	-			-2.1
89,489	+	MPMX19_05944	0.11	+0.3
89,489	+	MPMX19_05944	0.11	-0.3
89,489	+	MPMX19_05944	0.11	-1.4
89,489	+	MPMX19_05944	0.11	-0.3
89,489	+	MPMX19_05944	0.11	-0.2
89,504	+	MPMX19_05944	0.12	+0.3
89,504	+	MPMX19_05944	0.12	-1.9
89,504	+	MPMX19_05944	0.12	-1.6
89,504	+	MPMX19_05944	0.12	-0.7
89,504	+	MPMX19_05944	0.12	-1.0
89,504	+	MPMX19_05944	0.12	+0.1
89,504	+	MPMX19_05944	0.12	+1.3
89,504	+	MPMX19_05944	0.12	-1.2
89,504	+	MPMX19_05944	0.12	-1.7
89,504	+	MPMX19_05944	0.12	+0.1
89,504	+	MPMX19_05944	0.12	+0.1
89,504	+	MPMX19_05944	0.12	+0.7
89,504	+	MPMX19_05944	0.12	-0.6
89,504	+	MPMX19_05944	0.12	-0.9
89,504	+	MPMX19_05944	0.12	-0.7
89,504	+	MPMX19_05944	0.12	+0.3
89,504	+	MPMX19_05944	0.12	+0.2
89,505	-	MPMX19_05944	0.13	-1.4
89,505	-	MPMX19_05944	0.13	-0.1
89,505	-	MPMX19_05944	0.13	-0.6
89,505	-	MPMX19_05944	0.13	-0.6
89,505	-	MPMX19_05944	0.13	-1.9
89,505	-	MPMX19_05944	0.13	-1.4
89,505	-	MPMX19_05944	0.13	-0.7
89,505	-	MPMX19_05944	0.13	+0.3
89,528	+	MPMX19_05944	0.15	-0.2
89,528	+	MPMX19_05944	0.15	-1.4
89,528	+	MPMX19_05944	0.15	-1.9
89,528	+	MPMX19_05944	0.15	+0.0
89,528	+	MPMX19_05944	0.15	-0.9
89,528	+	MPMX19_05944	0.15	-1.7
89,528	+	MPMX19_05944	0.15	+1.1
89,528	+	MPMX19_05944	0.15	-0.9
89,528	+	MPMX19_05944	0.15	-0.7
89,529	-	MPMX19_05944	0.15	-0.7
89,529	-	MPMX19_05944	0.15	+0.2
89,529	-	MPMX19_05944	0.15	-0.1
89,529	-	MPMX19_05944	0.15	+0.9
89,529	-	MPMX19_05944	0.15	-2.1
89,529	-	MPMX19_05944	0.15	-1.4
89,529	-	MPMX19_05944	0.15	-0.2
89,529	-	MPMX19_05944	0.15	+0.9
89,663	+	MPMX19_05944	0.28	-0.0
89,663	+	MPMX19_05944	0.28	+0.2
89,663	+	MPMX19_05944	0.28	+0.2
89,663	+	MPMX19_05944	0.28	-0.7
89,663	+	MPMX19_05944	0.28	+0.1
89,664	-	MPMX19_05944	0.28	-1.4
89,664	-	MPMX19_05944	0.28	-0.7
89,664	-	MPMX19_05944	0.28	-0.9
89,861	+	MPMX19_05944	0.48	-1.4
89,861	+	MPMX19_05944	0.48	-1.1
89,861	+	MPMX19_05944	0.48	-0.7
89,861	+	MPMX19_05944	0.48	-1.7
89,861	+	MPMX19_05944	0.48	+0.9
89,861	+	MPMX19_05944	0.48	+0.5
89,861	+	MPMX19_05944	0.48	-1.1
89,861	+	MPMX19_05944	0.48	-0.3
89,861	+	MPMX19_05944	0.48	-1.1
89,861	+	MPMX19_05944	0.48	-1.4
89,861	+	MPMX19_05944	0.48	-0.6
89,861	+	MPMX19_05944	0.48	-0.4
89,861	+	MPMX19_05944	0.48	-0.7
89,861	+	MPMX19_05944	0.48	-0.8
89,862	-	MPMX19_05944	0.48	-1.1
89,862	-	MPMX19_05944	0.48	-0.1
89,862	-	MPMX19_05944	0.48	+1.2
89,862	-	MPMX19_05944	0.48	-1.4
89,862	-	MPMX19_05944	0.48	+0.9
89,862	-	MPMX19_05944	0.48	-1.0
89,862	-	MPMX19_05944	0.48	-1.9
89,862	-	MPMX19_05944	0.48	-0.1
89,862	-	MPMX19_05944	0.48	+0.3
89,862	-	MPMX19_05944	0.48	+0.3
89,862	-	MPMX19_05944	0.48	-2.4
89,862	-	MPMX19_05944	0.48	+0.5
89,862	-	MPMX19_05944	0.48	+0.2
89,862	-	MPMX19_05944	0.48	-0.7
89,862	-	MPMX19_05944	0.48	-0.9
89,862	-	MPMX19_05944	0.48	-0.1
89,862	-	MPMX19_05944	0.48	+0.2
89,862	-	MPMX19_05944	0.48	+0.9
89,862	-	MPMX19_05944	0.48	-1.0
89,870	+	MPMX19_05944	0.49	-0.3
89,870	+	MPMX19_05944	0.49	+0.2
89,871	-	MPMX19_05944	0.49	+0.5
89,984	+	MPMX19_05944	0.60	-0.4
89,984	+	MPMX19_05944	0.60	-1.1
89,985	-	MPMX19_05944	0.60	-0.4
89,985	-	MPMX19_05944	0.60	-1.1
89,985	-	MPMX19_05944	0.60	-0.7
89,985	-	MPMX19_05944	0.60	-2.7
89,985	-	MPMX19_05944	0.60	-0.8
89,985	-	MPMX19_05944	0.60	+0.1
90,038	+	MPMX19_05944	0.65	+0.1
90,038	+	MPMX19_05944	0.65	+0.1
90,038	+	MPMX19_05944	0.65	-1.0
90,038	+	MPMX19_05944	0.65	-1.4
90,038	+	MPMX19_05944	0.65	+0.3
90,038	+	MPMX19_05944	0.65	-0.4
90,038	+	MPMX19_05944	0.65	+0.1
90,038	+	MPMX19_05944	0.65	-0.2
90,038	+	MPMX19_05944	0.65	-1.4
90,038	+	MPMX19_05944	0.65	+0.6
90,038	+	MPMX19_05944	0.65	-1.7
90,039	-	MPMX19_05944	0.65	+1.2
90,039	-	MPMX19_05944	0.65	+0.6
90,039	-	MPMX19_05944	0.65	-1.0
90,039	-	MPMX19_05944	0.65	-0.2
90,039	-	MPMX19_05944	0.65	+0.3
90,039	-	MPMX19_05944	0.65	-0.4

Or see this region's nucleotide sequence