Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05849 and MPMX19_05850 are separated by 565 nucleotides MPMX19_05850 and MPMX19_05851 are separated by 53 nucleotides
MPMX19_05849: MPMX19_05849 - TorCAD operon transcriptional regulatory protein TorR, at 582,661 to 583,368
_05849
MPMX19_05850: MPMX19_05850 - hypothetical protein, at 583,934 to 586,147
_05850
MPMX19_05851: MPMX19_05851 - Putative amino-acid ABC transporter-binding protein YhdW, at 586,201 to 587,232
_05851
Position (kb) 583
584
585
586
587 Strain fitness (log2 ratio) -2
-1
0
1
2 at 582.955 kb on + strand, within MPMX19_05849 at 582.955 kb on + strand, within MPMX19_05849 at 582.956 kb on - strand, within MPMX19_05849 at 582.956 kb on - strand, within MPMX19_05849 at 582.956 kb on - strand, within MPMX19_05849 at 582.956 kb on - strand, within MPMX19_05849 at 582.956 kb on - strand, within MPMX19_05849 at 583.195 kb on + strand, within MPMX19_05849 at 583.196 kb on - strand, within MPMX19_05849 at 583.196 kb on - strand, within MPMX19_05849 at 583.196 kb on - strand, within MPMX19_05849 at 583.333 kb on + strand at 583.333 kb on + strand at 583.333 kb on + strand at 583.333 kb on + strand at 583.333 kb on + strand at 583.333 kb on + strand at 583.334 kb on - strand at 583.334 kb on - strand at 583.334 kb on - strand at 583.334 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.490 kb on - strand at 583.535 kb on + strand at 583.535 kb on + strand at 583.535 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.537 kb on + strand at 583.753 kb on + strand at 583.754 kb on - strand at 583.891 kb on + strand at 583.891 kb on + strand at 583.892 kb on - strand at 583.892 kb on - strand at 583.892 kb on - strand at 584.019 kb on + strand at 584.020 kb on - strand at 584.081 kb on + strand at 584.081 kb on + strand at 584.082 kb on - strand at 584.082 kb on - strand at 584.082 kb on - strand at 584.165 kb on + strand, within MPMX19_05850 at 584.165 kb on + strand, within MPMX19_05850 at 584.165 kb on + strand, within MPMX19_05850 at 584.165 kb on + strand, within MPMX19_05850 at 584.166 kb on - strand, within MPMX19_05850 at 584.166 kb on - strand, within MPMX19_05850 at 585.577 kb on + strand, within MPMX19_05850 at 586.108 kb on + strand at 586.108 kb on + strand at 586.108 kb on + strand at 586.108 kb on + strand at 586.108 kb on + strand at 586.109 kb on - strand at 586.109 kb on - strand at 586.109 kb on - strand at 586.109 kb on - strand at 586.109 kb on - strand at 586.109 kb on - strand at 586.109 kb on - strand at 586.109 kb on - strand at 586.109 kb on - strand at 586.109 kb on - strand at 586.235 kb on + strand at 586.235 kb on + strand at 586.236 kb on - strand at 586.236 kb on - strand at 586.267 kb on + strand at 586.267 kb on + strand at 586.267 kb on + strand at 586.268 kb on - strand at 586.268 kb on - strand at 586.268 kb on - strand at 586.268 kb on - strand at 586.284 kb on + strand at 586.705 kb on - strand, within MPMX19_05851 at 586.867 kb on + strand, within MPMX19_05851 at 586.867 kb on + strand, within MPMX19_05851 at 586.867 kb on + strand, within MPMX19_05851 at 586.867 kb on + strand, within MPMX19_05851 at 586.867 kb on + strand, within MPMX19_05851 at 586.868 kb on - strand, within MPMX19_05851 at 586.868 kb on - strand, within MPMX19_05851 at 586.903 kb on + strand, within MPMX19_05851 at 586.903 kb on + strand, within MPMX19_05851 at 586.904 kb on - strand, within MPMX19_05851 at 586.904 kb on - strand, within MPMX19_05851 at 586.904 kb on - strand, within MPMX19_05851 at 586.904 kb on - strand, within MPMX19_05851 at 586.904 kb on - strand, within MPMX19_05851 at 586.904 kb on - strand, within MPMX19_05851 at 586.930 kb on + strand, within MPMX19_05851 at 586.930 kb on + strand, within MPMX19_05851 at 586.930 kb on + strand, within MPMX19_05851 at 586.930 kb on + strand, within MPMX19_05851 at 586.930 kb on + strand, within MPMX19_05851 at 586.930 kb on + strand, within MPMX19_05851 at 586.930 kb on + strand, within MPMX19_05851 at 586.930 kb on + strand, within MPMX19_05851 at 586.931 kb on - strand, within MPMX19_05851 at 587.125 kb on + strand, within MPMX19_05851 at 587.125 kb on + strand, within MPMX19_05851 at 587.125 kb on + strand, within MPMX19_05851 at 587.125 kb on + strand, within MPMX19_05851 at 587.126 kb on - strand, within MPMX19_05851 at 587.126 kb on - strand, within MPMX19_05851 at 587.126 kb on - strand, within MPMX19_05851
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 582,955 + MPMX19_05849 0.42 -1.5 582,955 + MPMX19_05849 0.42 -1.0 582,956 - MPMX19_05849 0.42 -1.2 582,956 - MPMX19_05849 0.42 -1.5 582,956 - MPMX19_05849 0.42 +1.8 582,956 - MPMX19_05849 0.42 -0.8 582,956 - MPMX19_05849 0.42 -0.9 583,195 + MPMX19_05849 0.75 -0.2 583,196 - MPMX19_05849 0.76 +0.2 583,196 - MPMX19_05849 0.76 +0.2 583,196 - MPMX19_05849 0.76 -0.8 583,333 + +0.8 583,333 + +0.8 583,333 + +1.8 583,333 + -0.2 583,333 + -1.2 583,333 + -1.8 583,334 - +0.1 583,334 - +0.2 583,334 - -0.8 583,334 - -0.8 583,490 - +0.8 583,490 - -0.5 583,490 - -1.3 583,490 - -0.5 583,490 - -1.0 583,490 - -1.5 583,490 - -0.2 583,490 - +0.1 583,490 - +0.2 583,490 - -0.8 583,490 - -1.1 583,490 - -1.2 583,490 - -1.8 583,490 - -0.2 583,490 - +1.0 583,490 - -2.5 583,490 - -0.2 583,535 + -1.0 583,535 + -0.3 583,535 + -1.5 583,537 + +0.8 583,537 + -1.2 583,537 + -0.2 583,537 + -0.2 583,537 + -1.2 583,537 + +0.1 583,537 + -0.6 583,537 + -0.9 583,537 + -0.1 583,537 + -0.3 583,537 + -0.7 583,753 + +0.1 583,754 - +0.4 583,891 + -1.5 583,891 + -1.7 583,892 - -2.1 583,892 - +0.1 583,892 - -0.5 584,019 + -2.2 584,020 - -1.2 584,081 + -1.0 584,081 + -1.2 584,082 - -0.5 584,082 - -1.8 584,082 - +1.2 584,165 + MPMX19_05850 0.10 -2.0 584,165 + MPMX19_05850 0.10 -0.2 584,165 + MPMX19_05850 0.10 -2.1 584,165 + MPMX19_05850 0.10 -1.2 584,166 - MPMX19_05850 0.10 -1.8 584,166 - MPMX19_05850 0.10 +1.8 585,577 + MPMX19_05850 0.74 -0.4 586,108 + -0.2 586,108 + -2.0 586,108 + -0.8 586,108 + +0.6 586,108 + -1.2 586,109 - -0.7 586,109 - -2.2 586,109 - -0.8 586,109 - +1.8 586,109 - +1.8 586,109 - +0.8 586,109 - -0.2 586,109 - -1.0 586,109 - -0.1 586,109 - -1.1 586,235 + -0.8 586,235 + -0.2 586,236 - +1.1 586,236 - -1.5 586,267 + -1.1 586,267 + -0.6 586,267 + +1.8 586,268 - -0.5 586,268 - -1.8 586,268 - -0.5 586,268 - -0.0 586,284 + -0.2 586,705 - MPMX19_05851 0.49 -0.8 586,867 + MPMX19_05851 0.65 -0.5 586,867 + MPMX19_05851 0.65 -0.8 586,867 + MPMX19_05851 0.65 -1.2 586,867 + MPMX19_05851 0.65 -0.1 586,867 + MPMX19_05851 0.65 +0.8 586,868 - MPMX19_05851 0.65 +0.3 586,868 - MPMX19_05851 0.65 -0.9 586,903 + MPMX19_05851 0.68 -1.8 586,903 + MPMX19_05851 0.68 +0.8 586,904 - MPMX19_05851 0.68 +2.4 586,904 - MPMX19_05851 0.68 -0.5 586,904 - MPMX19_05851 0.68 -0.4 586,904 - MPMX19_05851 0.68 -0.1 586,904 - MPMX19_05851 0.68 -1.2 586,904 - MPMX19_05851 0.68 +0.8 586,930 + MPMX19_05851 0.71 -1.5 586,930 + MPMX19_05851 0.71 +0.2 586,930 + MPMX19_05851 0.71 +0.3 586,930 + MPMX19_05851 0.71 -0.8 586,930 + MPMX19_05851 0.71 -1.8 586,930 + MPMX19_05851 0.71 -1.1 586,930 + MPMX19_05851 0.71 -1.3 586,930 + MPMX19_05851 0.71 -0.2 586,931 - MPMX19_05851 0.71 -1.2 587,125 + MPMX19_05851 0.90 +0.8 587,125 + MPMX19_05851 0.90 +0.5 587,125 + MPMX19_05851 0.90 -2.5 587,125 + MPMX19_05851 0.90 +0.6 587,126 - MPMX19_05851 0.90 -0.2 587,126 - MPMX19_05851 0.90 -0.8 587,126 - MPMX19_05851 0.90 +0.8
Or see this region's nucleotide sequence