Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05813 and MPMX19_05814 are separated by 118 nucleotides MPMX19_05814 and MPMX19_05815 are separated by 17 nucleotides MPMX19_05815 and MPMX19_05816 are separated by 60 nucleotides
MPMX19_05813: MPMX19_05813 - 2-hydroxy-3-oxopropionate reductase, at 540,804 to 541,688
_05813
MPMX19_05814: MPMX19_05814 - Putative hydroxypyruvate reductase, at 541,807 to 543,096
_05814
MPMX19_05815: MPMX19_05815 - hypothetical protein, at 543,114 to 543,884
_05815
MPMX19_05816: MPMX19_05816 - Thiol-disulfide oxidoreductase ResA, at 543,945 to 544,625
_05816
Position (kb) 541
542
543
544 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 541.110 kb on + strand, within MPMX19_05813 at 541.110 kb on + strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.143 kb on + strand, within MPMX19_05813 at 541.143 kb on + strand, within MPMX19_05813 at 541.143 kb on + strand, within MPMX19_05813 at 541.144 kb on - strand, within MPMX19_05813 at 541.686 kb on + strand at 541.686 kb on + strand at 541.686 kb on + strand at 541.686 kb on + strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.773 kb on + strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 541.774 kb on - strand at 542.035 kb on + strand, within MPMX19_05814 at 542.035 kb on + strand, within MPMX19_05814 at 542.473 kb on + strand, within MPMX19_05814 at 542.473 kb on + strand, within MPMX19_05814 at 542.473 kb on + strand, within MPMX19_05814 at 542.473 kb on + strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.474 kb on - strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.635 kb on + strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 542.636 kb on - strand, within MPMX19_05814 at 543.001 kb on + strand at 543.001 kb on + strand at 543.002 kb on - strand at 543.002 kb on - strand at 543.002 kb on - strand at 543.160 kb on + strand at 543.160 kb on + strand at 543.160 kb on + strand at 543.160 kb on + strand at 543.160 kb on + strand at 543.160 kb on + strand at 543.160 kb on + strand at 543.160 kb on + strand at 543.160 kb on + strand at 543.160 kb on + strand at 543.161 kb on - strand at 543.161 kb on - strand at 543.161 kb on - strand at 543.161 kb on - strand at 543.161 kb on - strand at 543.161 kb on - strand at 543.161 kb on - strand at 543.161 kb on - strand at 543.161 kb on - strand at 543.161 kb on - strand at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.295 kb on + strand, within MPMX19_05815 at 543.296 kb on - strand, within MPMX19_05815 at 543.296 kb on - strand, within MPMX19_05815 at 543.296 kb on - strand, within MPMX19_05815 at 543.296 kb on - strand, within MPMX19_05815 at 543.296 kb on - strand, within MPMX19_05815 at 543.296 kb on - strand, within MPMX19_05815 at 543.296 kb on - strand, within MPMX19_05815 at 543.296 kb on - strand, within MPMX19_05815 at 543.296 kb on - strand, within MPMX19_05815 at 543.394 kb on + strand, within MPMX19_05815 at 543.394 kb on + strand, within MPMX19_05815 at 543.394 kb on + strand, within MPMX19_05815 at 543.395 kb on - strand, within MPMX19_05815 at 543.395 kb on - strand, within MPMX19_05815 at 543.395 kb on - strand, within MPMX19_05815 at 543.395 kb on - strand, within MPMX19_05815 at 543.532 kb on + strand, within MPMX19_05815 at 543.532 kb on + strand, within MPMX19_05815 at 543.532 kb on + strand, within MPMX19_05815 at 543.533 kb on - strand, within MPMX19_05815 at 543.533 kb on - strand, within MPMX19_05815 at 543.533 kb on - strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.571 kb on + strand, within MPMX19_05815 at 543.572 kb on - strand, within MPMX19_05815 at 543.572 kb on - strand, within MPMX19_05815 at 543.572 kb on - strand, within MPMX19_05815 at 543.572 kb on - strand, within MPMX19_05815 at 543.572 kb on - strand, within MPMX19_05815 at 543.572 kb on - strand, within MPMX19_05815 at 543.572 kb on - strand, within MPMX19_05815 at 543.572 kb on - strand, within MPMX19_05815 at 543.572 kb on - strand, within MPMX19_05815 at 543.911 kb on + strand at 543.911 kb on + strand at 543.911 kb on + strand at 543.911 kb on + strand at 543.911 kb on + strand at 543.911 kb on + strand at 543.912 kb on - strand at 543.912 kb on - strand at 543.924 kb on + strand at 543.924 kb on + strand at 543.924 kb on + strand at 543.925 kb on - strand at 543.925 kb on - strand at 543.925 kb on - strand at 543.925 kb on - strand at 543.925 kb on - strand at 543.925 kb on - strand at 543.925 kb on - strand at 543.925 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 540,882 + +0.2 540,882 + -1.5 540,882 + +0.3 540,882 + -1.5 540,882 + -1.8 540,882 + +1.3 540,882 + +0.2 540,882 + -0.2 540,882 + +0.1 540,883 - -0.5 540,883 - -1.8 540,883 - -1.0 540,883 - -0.8 540,883 - -1.4 540,883 - -0.9 540,883 - -2.4 540,883 - -1.8 540,883 - -1.8 540,883 - -0.3 540,883 - +0.0 540,883 - -0.2 540,883 - +0.3 540,883 - -2.0 540,883 - +0.8 540,883 - +0.6 540,883 - +0.8 540,883 - -1.5 540,883 - +1.4 540,883 - -0.2 540,883 - -1.5 541,110 + MPMX19_05813 0.35 +0.3 541,110 + MPMX19_05813 0.35 -1.0 541,111 - MPMX19_05813 0.35 -0.6 541,111 - MPMX19_05813 0.35 -1.5 541,111 - MPMX19_05813 0.35 -1.8 541,111 - MPMX19_05813 0.35 +1.2 541,143 + MPMX19_05813 0.38 -0.8 541,143 + MPMX19_05813 0.38 -0.2 541,143 + MPMX19_05813 0.38 +0.8 541,144 - MPMX19_05813 0.38 +0.1 541,686 + +0.8 541,686 + -0.5 541,686 + -0.2 541,686 + -1.5 541,687 - -0.1 541,687 - -0.7 541,687 - -0.2 541,687 - -1.4 541,687 - -0.1 541,773 + -0.8 541,773 + -0.2 541,773 + -0.8 541,773 + -1.2 541,773 + +0.2 541,773 + +0.5 541,773 + -0.2 541,773 + +0.2 541,773 + +0.8 541,773 + -1.2 541,773 + +0.4 541,773 + +0.5 541,774 - -0.7 541,774 - -0.5 541,774 - +0.4 541,774 - -0.0 541,774 - +0.5 541,774 - -0.6 541,774 - +0.2 541,774 - -0.5 542,035 + MPMX19_05814 0.18 +1.5 542,035 + MPMX19_05814 0.18 -0.2 542,473 + MPMX19_05814 0.52 -1.5 542,473 + MPMX19_05814 0.52 -0.4 542,473 + MPMX19_05814 0.52 -0.5 542,473 + MPMX19_05814 0.52 -0.7 542,474 - MPMX19_05814 0.52 -0.2 542,474 - MPMX19_05814 0.52 +2.2 542,474 - MPMX19_05814 0.52 +0.5 542,474 - MPMX19_05814 0.52 -0.8 542,474 - MPMX19_05814 0.52 -0.2 542,474 - MPMX19_05814 0.52 -0.2 542,474 - MPMX19_05814 0.52 -0.4 542,635 + MPMX19_05814 0.64 -1.5 542,635 + MPMX19_05814 0.64 +0.4 542,635 + MPMX19_05814 0.64 +0.5 542,635 + MPMX19_05814 0.64 -0.8 542,635 + MPMX19_05814 0.64 +2.6 542,635 + MPMX19_05814 0.64 -0.8 542,635 + MPMX19_05814 0.64 -0.5 542,635 + MPMX19_05814 0.64 +0.4 542,635 + MPMX19_05814 0.64 -2.0 542,635 + MPMX19_05814 0.64 +0.4 542,636 - MPMX19_05814 0.64 -0.2 542,636 - MPMX19_05814 0.64 +0.2 542,636 - MPMX19_05814 0.64 -0.8 542,636 - MPMX19_05814 0.64 -1.0 542,636 - MPMX19_05814 0.64 -0.8 542,636 - MPMX19_05814 0.64 -1.0 542,636 - MPMX19_05814 0.64 -0.8 542,636 - MPMX19_05814 0.64 -0.8 542,636 - MPMX19_05814 0.64 +0.4 542,636 - MPMX19_05814 0.64 +0.5 543,001 + +0.6 543,001 + -0.8 543,002 - -0.2 543,002 - -0.8 543,002 - -1.5 543,160 + +0.4 543,160 + -0.8 543,160 + +1.8 543,160 + -3.3 543,160 + -1.8 543,160 + -1.3 543,160 + +0.3 543,160 + -0.8 543,160 + +0.5 543,160 + -1.8 543,161 - +0.5 543,161 - -0.0 543,161 - -0.9 543,161 - -0.2 543,161 - -0.6 543,161 - -0.8 543,161 - -0.8 543,161 - -0.3 543,161 - +0.8 543,161 - -0.6 543,295 + MPMX19_05815 0.23 -1.2 543,295 + MPMX19_05815 0.23 -1.1 543,295 + MPMX19_05815 0.23 -0.6 543,295 + MPMX19_05815 0.23 -1.2 543,295 + MPMX19_05815 0.23 -1.2 543,295 + MPMX19_05815 0.23 -1.1 543,295 + MPMX19_05815 0.23 -1.3 543,295 + MPMX19_05815 0.23 +0.1 543,295 + MPMX19_05815 0.23 +0.1 543,295 + MPMX19_05815 0.23 -1.8 543,295 + MPMX19_05815 0.23 +1.8 543,295 + MPMX19_05815 0.23 +2.1 543,295 + MPMX19_05815 0.23 -0.8 543,295 + MPMX19_05815 0.23 -1.7 543,295 + MPMX19_05815 0.23 -0.1 543,296 - MPMX19_05815 0.24 -0.9 543,296 - MPMX19_05815 0.24 +0.2 543,296 - MPMX19_05815 0.24 -0.5 543,296 - MPMX19_05815 0.24 +0.8 543,296 - MPMX19_05815 0.24 -0.2 543,296 - MPMX19_05815 0.24 -1.1 543,296 - MPMX19_05815 0.24 -2.5 543,296 - MPMX19_05815 0.24 -0.2 543,296 - MPMX19_05815 0.24 -1.5 543,394 + MPMX19_05815 0.36 -0.8 543,394 + MPMX19_05815 0.36 -1.2 543,394 + MPMX19_05815 0.36 -0.8 543,395 - MPMX19_05815 0.36 +0.5 543,395 - MPMX19_05815 0.36 -2.2 543,395 - MPMX19_05815 0.36 -0.5 543,395 - MPMX19_05815 0.36 +0.2 543,532 + MPMX19_05815 0.54 -0.8 543,532 + MPMX19_05815 0.54 +0.2 543,532 + MPMX19_05815 0.54 -1.5 543,533 - MPMX19_05815 0.54 -0.5 543,533 - MPMX19_05815 0.54 -0.1 543,533 - MPMX19_05815 0.54 -1.8 543,571 + MPMX19_05815 0.59 -1.8 543,571 + MPMX19_05815 0.59 +0.5 543,571 + MPMX19_05815 0.59 -1.7 543,571 + MPMX19_05815 0.59 -0.4 543,571 + MPMX19_05815 0.59 +0.8 543,571 + MPMX19_05815 0.59 +0.1 543,571 + MPMX19_05815 0.59 +0.2 543,571 + MPMX19_05815 0.59 -0.6 543,571 + MPMX19_05815 0.59 -0.7 543,571 + MPMX19_05815 0.59 +1.8 543,571 + MPMX19_05815 0.59 -0.8 543,571 + MPMX19_05815 0.59 -0.8 543,571 + MPMX19_05815 0.59 -1.5 543,572 - MPMX19_05815 0.59 +0.1 543,572 - MPMX19_05815 0.59 -1.2 543,572 - MPMX19_05815 0.59 -1.1 543,572 - MPMX19_05815 0.59 +0.1 543,572 - MPMX19_05815 0.59 +0.4 543,572 - MPMX19_05815 0.59 -0.1 543,572 - MPMX19_05815 0.59 +0.4 543,572 - MPMX19_05815 0.59 -0.2 543,572 - MPMX19_05815 0.59 -0.0 543,911 + +0.8 543,911 + -1.1 543,911 + +2.0 543,911 + -0.2 543,911 + +0.1 543,911 + +0.4 543,912 - -0.1 543,912 - -0.2 543,924 + -1.2 543,924 + +0.8 543,924 + -1.2 543,925 - +0.5 543,925 - +1.8 543,925 - -2.0 543,925 - -1.8 543,925 - +0.4 543,925 - -0.8 543,925 - -0.1 543,925 - +0.1
Or see this region's nucleotide sequence