Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05584 and MPMX19_05585 are separated by 293 nucleotides MPMX19_05585 and MPMX19_05586 are separated by 21 nucleotides MPMX19_05586 and MPMX19_05587 are separated by 236 nucleotides
MPMX19_05584: MPMX19_05584 - hypothetical protein, at 294,471 to 296,171
_05584
MPMX19_05585: MPMX19_05585 - hypothetical protein, at 296,465 to 297,127
_05585
MPMX19_05586: MPMX19_05586 - hypothetical protein, at 297,149 to 297,802
_05586
MPMX19_05587: MPMX19_05587 - Membrane lipoprotein TmpC, at 298,039 to 299,034
_05587
Position (kb) 297
298 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 296.149 kb on - strand at 296.180 kb on - strand at 296.310 kb on - strand at 296.331 kb on + strand at 296.331 kb on + strand at 296.332 kb on - strand at 296.332 kb on - strand at 296.332 kb on - strand at 296.357 kb on + strand at 296.516 kb on + strand at 296.516 kb on + strand at 296.516 kb on + strand at 296.516 kb on + strand at 296.516 kb on + strand at 296.516 kb on + strand at 296.516 kb on + strand at 296.516 kb on + strand at 296.517 kb on - strand at 296.517 kb on - strand at 296.517 kb on - strand at 296.517 kb on - strand at 296.517 kb on - strand at 296.517 kb on - strand at 296.517 kb on - strand at 296.735 kb on + strand, within MPMX19_05585 at 296.736 kb on - strand, within MPMX19_05585 at 296.736 kb on - strand, within MPMX19_05585 at 296.736 kb on - strand, within MPMX19_05585 at 296.736 kb on - strand, within MPMX19_05585 at 296.736 kb on - strand, within MPMX19_05585 at 296.736 kb on - strand, within MPMX19_05585 at 296.894 kb on + strand, within MPMX19_05585 at 296.894 kb on + strand, within MPMX19_05585 at 296.894 kb on + strand, within MPMX19_05585 at 296.894 kb on + strand, within MPMX19_05585 at 296.894 kb on + strand, within MPMX19_05585 at 296.894 kb on + strand, within MPMX19_05585 at 296.894 kb on + strand, within MPMX19_05585 at 296.894 kb on + strand, within MPMX19_05585 at 296.894 kb on + strand, within MPMX19_05585 at 296.895 kb on - strand, within MPMX19_05585 at 296.895 kb on - strand, within MPMX19_05585 at 296.895 kb on - strand, within MPMX19_05585 at 296.895 kb on - strand, within MPMX19_05585 at 296.895 kb on - strand, within MPMX19_05585 at 296.954 kb on + strand, within MPMX19_05585 at 296.954 kb on + strand, within MPMX19_05585 at 296.954 kb on + strand, within MPMX19_05585 at 296.954 kb on + strand, within MPMX19_05585 at 296.954 kb on + strand, within MPMX19_05585 at 296.955 kb on - strand, within MPMX19_05585 at 296.955 kb on - strand, within MPMX19_05585 at 296.955 kb on - strand, within MPMX19_05585 at 296.955 kb on - strand, within MPMX19_05585 at 296.955 kb on - strand, within MPMX19_05585 at 296.955 kb on - strand, within MPMX19_05585 at 296.955 kb on - strand, within MPMX19_05585 at 296.955 kb on - strand, within MPMX19_05585 at 296.955 kb on - strand, within MPMX19_05585 at 296.955 kb on - strand, within MPMX19_05585 at 296.955 kb on - strand, within MPMX19_05585 at 296.955 kb on - strand, within MPMX19_05585 at 296.996 kb on + strand, within MPMX19_05585 at 296.996 kb on + strand, within MPMX19_05585 at 296.996 kb on + strand, within MPMX19_05585 at 296.997 kb on - strand, within MPMX19_05585 at 296.997 kb on - strand, within MPMX19_05585 at 297.035 kb on + strand, within MPMX19_05585 at 297.035 kb on + strand, within MPMX19_05585 at 297.035 kb on + strand, within MPMX19_05585 at 297.035 kb on + strand, within MPMX19_05585 at 297.035 kb on + strand, within MPMX19_05585 at 297.035 kb on + strand, within MPMX19_05585 at 297.035 kb on + strand, within MPMX19_05585 at 297.035 kb on + strand, within MPMX19_05585 at 297.035 kb on + strand, within MPMX19_05585 at 297.035 kb on + strand, within MPMX19_05585 at 297.035 kb on + strand, within MPMX19_05585 at 297.036 kb on - strand, within MPMX19_05585 at 297.036 kb on - strand, within MPMX19_05585 at 297.036 kb on - strand, within MPMX19_05585 at 297.036 kb on - strand, within MPMX19_05585 at 297.036 kb on - strand, within MPMX19_05585 at 297.036 kb on - strand, within MPMX19_05585 at 297.036 kb on - strand, within MPMX19_05585 at 297.036 kb on - strand, within MPMX19_05585 at 297.036 kb on - strand, within MPMX19_05585 at 297.642 kb on + strand, within MPMX19_05586 at 297.642 kb on + strand, within MPMX19_05586 at 297.642 kb on + strand, within MPMX19_05586 at 297.642 kb on + strand, within MPMX19_05586 at 297.642 kb on + strand, within MPMX19_05586 at 297.643 kb on - strand, within MPMX19_05586 at 297.643 kb on - strand, within MPMX19_05586 at 297.643 kb on - strand, within MPMX19_05586 at 297.643 kb on - strand, within MPMX19_05586 at 297.825 kb on + strand at 297.905 kb on + strand at 297.905 kb on + strand at 297.906 kb on - strand at 298.050 kb on + strand at 298.050 kb on + strand at 298.050 kb on + strand at 298.050 kb on + strand at 298.050 kb on + strand at 298.051 kb on - strand at 298.051 kb on - strand at 298.051 kb on - strand at 298.051 kb on - strand at 298.051 kb on - strand at 298.051 kb on - strand at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.189 kb on + strand, within MPMX19_05587 at 298.190 kb on - strand, within MPMX19_05587 at 298.190 kb on - strand, within MPMX19_05587 at 298.190 kb on - strand, within MPMX19_05587 at 298.190 kb on - strand, within MPMX19_05587 at 298.190 kb on - strand, within MPMX19_05587 at 298.190 kb on - strand, within MPMX19_05587 at 298.191 kb on + strand, within MPMX19_05587 at 298.192 kb on - strand, within MPMX19_05587 at 298.232 kb on - strand, within MPMX19_05587 at 298.550 kb on - strand, within MPMX19_05587
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 296,149 - -0.5 296,180 - -1.3 296,310 - -0.8 296,331 + -0.2 296,331 + -1.3 296,332 - +0.8 296,332 - -2.0 296,332 - -1.5 296,357 + -0.7 296,516 + -1.2 296,516 + -2.3 296,516 + -0.6 296,516 + -1.5 296,516 + +1.0 296,516 + -1.6 296,516 + -0.8 296,516 + +0.2 296,517 - +0.1 296,517 - -1.2 296,517 - -0.5 296,517 - -1.3 296,517 - -2.4 296,517 - -0.6 296,517 - -1.8 296,735 + MPMX19_05585 0.41 -2.5 296,736 - MPMX19_05585 0.41 -0.8 296,736 - MPMX19_05585 0.41 -1.3 296,736 - MPMX19_05585 0.41 -1.2 296,736 - MPMX19_05585 0.41 -0.2 296,736 - MPMX19_05585 0.41 -1.3 296,736 - MPMX19_05585 0.41 -1.3 296,894 + MPMX19_05585 0.65 -0.9 296,894 + MPMX19_05585 0.65 -1.5 296,894 + MPMX19_05585 0.65 -1.5 296,894 + MPMX19_05585 0.65 -0.5 296,894 + MPMX19_05585 0.65 -1.1 296,894 + MPMX19_05585 0.65 -0.5 296,894 + MPMX19_05585 0.65 -0.8 296,894 + MPMX19_05585 0.65 -0.2 296,894 + MPMX19_05585 0.65 -0.2 296,895 - MPMX19_05585 0.65 -0.6 296,895 - MPMX19_05585 0.65 +0.0 296,895 - MPMX19_05585 0.65 +3.1 296,895 - MPMX19_05585 0.65 -0.2 296,895 - MPMX19_05585 0.65 +0.8 296,954 + MPMX19_05585 0.74 -2.0 296,954 + MPMX19_05585 0.74 +0.4 296,954 + MPMX19_05585 0.74 +0.8 296,954 + MPMX19_05585 0.74 -0.5 296,954 + MPMX19_05585 0.74 -1.2 296,955 - MPMX19_05585 0.74 -1.4 296,955 - MPMX19_05585 0.74 +0.3 296,955 - MPMX19_05585 0.74 -2.1 296,955 - MPMX19_05585 0.74 -1.8 296,955 - MPMX19_05585 0.74 -1.1 296,955 - MPMX19_05585 0.74 -1.3 296,955 - MPMX19_05585 0.74 -1.1 296,955 - MPMX19_05585 0.74 -2.2 296,955 - MPMX19_05585 0.74 -1.5 296,955 - MPMX19_05585 0.74 -1.2 296,955 - MPMX19_05585 0.74 -1.5 296,955 - MPMX19_05585 0.74 +0.3 296,996 + MPMX19_05585 0.80 -1.8 296,996 + MPMX19_05585 0.80 -0.5 296,996 + MPMX19_05585 0.80 -0.4 296,997 - MPMX19_05585 0.80 +0.3 296,997 - MPMX19_05585 0.80 -1.2 297,035 + MPMX19_05585 0.86 -0.2 297,035 + MPMX19_05585 0.86 -1.5 297,035 + MPMX19_05585 0.86 +0.8 297,035 + MPMX19_05585 0.86 +0.1 297,035 + MPMX19_05585 0.86 +0.0 297,035 + MPMX19_05585 0.86 -0.5 297,035 + MPMX19_05585 0.86 -1.2 297,035 + MPMX19_05585 0.86 -0.2 297,035 + MPMX19_05585 0.86 -0.4 297,035 + MPMX19_05585 0.86 -0.9 297,035 + MPMX19_05585 0.86 -1.2 297,036 - MPMX19_05585 0.86 -0.1 297,036 - MPMX19_05585 0.86 +0.8 297,036 - MPMX19_05585 0.86 -0.3 297,036 - MPMX19_05585 0.86 -0.2 297,036 - MPMX19_05585 0.86 -1.4 297,036 - MPMX19_05585 0.86 -2.0 297,036 - MPMX19_05585 0.86 +1.1 297,036 - MPMX19_05585 0.86 -0.2 297,036 - MPMX19_05585 0.86 -1.2 297,642 + MPMX19_05586 0.75 +0.8 297,642 + MPMX19_05586 0.75 -1.8 297,642 + MPMX19_05586 0.75 -1.5 297,642 + MPMX19_05586 0.75 +0.6 297,642 + MPMX19_05586 0.75 -2.0 297,643 - MPMX19_05586 0.76 -1.0 297,643 - MPMX19_05586 0.76 -0.2 297,643 - MPMX19_05586 0.76 -1.9 297,643 - MPMX19_05586 0.76 -1.8 297,825 + -1.0 297,905 + -1.7 297,905 + -1.3 297,906 - -0.1 298,050 + -0.3 298,050 + +0.2 298,050 + -1.0 298,050 + -0.2 298,050 + -1.1 298,051 - +0.8 298,051 - -1.6 298,051 - -0.6 298,051 - +0.2 298,051 - -0.8 298,051 - +0.4 298,189 + MPMX19_05587 0.15 +0.4 298,189 + MPMX19_05587 0.15 -0.9 298,189 + MPMX19_05587 0.15 +0.2 298,189 + MPMX19_05587 0.15 -1.1 298,189 + MPMX19_05587 0.15 -0.8 298,189 + MPMX19_05587 0.15 +1.1 298,189 + MPMX19_05587 0.15 -0.3 298,189 + MPMX19_05587 0.15 -1.8 298,189 + MPMX19_05587 0.15 -0.0 298,189 + MPMX19_05587 0.15 +0.4 298,189 + MPMX19_05587 0.15 -0.8 298,189 + MPMX19_05587 0.15 +0.8 298,189 + MPMX19_05587 0.15 -1.7 298,189 + MPMX19_05587 0.15 -1.4 298,189 + MPMX19_05587 0.15 -0.8 298,189 + MPMX19_05587 0.15 +0.1 298,189 + MPMX19_05587 0.15 -1.0 298,189 + MPMX19_05587 0.15 -1.2 298,190 - MPMX19_05587 0.15 -1.5 298,190 - MPMX19_05587 0.15 +0.2 298,190 - MPMX19_05587 0.15 -0.6 298,190 - MPMX19_05587 0.15 -0.5 298,190 - MPMX19_05587 0.15 -0.5 298,190 - MPMX19_05587 0.15 -1.5 298,191 + MPMX19_05587 0.15 -0.8 298,192 - MPMX19_05587 0.15 -0.5 298,232 - MPMX19_05587 0.19 -0.4 298,550 - MPMX19_05587 0.51 -0.3
Or see this region's nucleotide sequence