Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05519 and MPMX19_05520 are separated by 261 nucleotides MPMX19_05520 and MPMX19_05521 are separated by 112 nucleotides MPMX19_05521 and MPMX19_05522 are separated by 404 nucleotides
MPMX19_05519: MPMX19_05519 - LL-diaminopimelate aminotransferase, at 226,248 to 227,504
_05519
MPMX19_05520: MPMX19_05520 - hypothetical protein, at 227,766 to 228,329
_05520
MPMX19_05521: MPMX19_05521 - Nitrogen regulatory protein P-II 2, at 228,442 to 228,780
_05521
MPMX19_05522: MPMX19_05522 - Ubiquinone hydroxylase UbiL, at 229,185 to 230,459
_05522
Position (kb) 228
229 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 227.589 kb on - strand at 227.589 kb on - strand at 227.677 kb on + strand at 227.677 kb on + strand at 227.678 kb on - strand at 227.692 kb on + strand at 227.692 kb on + strand at 227.693 kb on - strand at 227.709 kb on - strand at 228.165 kb on + strand, within MPMX19_05520 at 228.165 kb on + strand, within MPMX19_05520 at 228.165 kb on + strand, within MPMX19_05520 at 228.166 kb on - strand, within MPMX19_05520 at 228.204 kb on + strand, within MPMX19_05520 at 228.204 kb on + strand, within MPMX19_05520 at 228.204 kb on + strand, within MPMX19_05520 at 228.204 kb on + strand, within MPMX19_05520 at 228.204 kb on + strand, within MPMX19_05520 at 228.204 kb on + strand, within MPMX19_05520 at 228.205 kb on - strand, within MPMX19_05520 at 228.205 kb on - strand, within MPMX19_05520 at 228.228 kb on + strand, within MPMX19_05520 at 228.228 kb on + strand, within MPMX19_05520 at 228.228 kb on + strand, within MPMX19_05520 at 228.228 kb on + strand, within MPMX19_05520 at 228.228 kb on + strand, within MPMX19_05520 at 228.228 kb on + strand, within MPMX19_05520 at 228.228 kb on + strand, within MPMX19_05520 at 228.229 kb on - strand, within MPMX19_05520 at 228.229 kb on - strand, within MPMX19_05520 at 228.229 kb on - strand, within MPMX19_05520 at 228.229 kb on - strand, within MPMX19_05520 at 228.229 kb on - strand, within MPMX19_05520 at 228.291 kb on + strand at 228.292 kb on - strand at 228.347 kb on + strand at 228.348 kb on - strand at 228.348 kb on - strand at 228.348 kb on - strand at 228.443 kb on + strand at 228.443 kb on + strand at 228.443 kb on + strand at 228.443 kb on + strand at 228.443 kb on + strand at 228.443 kb on + strand at 228.443 kb on + strand at 228.443 kb on + strand at 228.443 kb on + strand at 228.443 kb on + strand at 228.444 kb on - strand at 228.444 kb on - strand at 228.444 kb on - strand at 228.444 kb on - strand at 228.444 kb on - strand at 228.444 kb on - strand at 228.572 kb on + strand, within MPMX19_05521 at 228.572 kb on + strand, within MPMX19_05521 at 228.572 kb on + strand, within MPMX19_05521 at 228.572 kb on + strand, within MPMX19_05521 at 228.572 kb on + strand, within MPMX19_05521 at 228.572 kb on + strand, within MPMX19_05521 at 228.573 kb on - strand, within MPMX19_05521 at 228.573 kb on - strand, within MPMX19_05521 at 228.573 kb on - strand, within MPMX19_05521 at 228.629 kb on + strand, within MPMX19_05521 at 228.644 kb on + strand, within MPMX19_05521 at 228.769 kb on - strand at 228.769 kb on - strand at 228.769 kb on - strand at 228.793 kb on + strand at 228.793 kb on + strand at 228.794 kb on - strand at 228.794 kb on - strand at 228.862 kb on + strand at 228.862 kb on + strand at 228.863 kb on - strand at 228.919 kb on + strand at 228.919 kb on + strand at 228.919 kb on + strand at 228.961 kb on + strand at 228.961 kb on + strand at 228.961 kb on + strand at 228.961 kb on + strand at 228.961 kb on + strand at 228.962 kb on - strand at 228.962 kb on - strand at 228.962 kb on - strand at 228.962 kb on - strand at 228.962 kb on - strand at 228.962 kb on - strand at 228.962 kb on - strand at 228.962 kb on - strand at 228.962 kb on - strand at 228.962 kb on - strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.161 kb on + strand at 229.162 kb on - strand at 229.162 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 227,589 - -0.8 227,589 - -0.2 227,677 + -0.7 227,677 + -2.0 227,678 - -3.2 227,692 + +0.1 227,692 + +0.4 227,693 - -3.2 227,709 - -0.9 228,165 + MPMX19_05520 0.71 -0.8 228,165 + MPMX19_05520 0.71 -1.8 228,165 + MPMX19_05520 0.71 -1.5 228,166 - MPMX19_05520 0.71 +1.2 228,204 + MPMX19_05520 0.78 +1.5 228,204 + MPMX19_05520 0.78 -0.4 228,204 + MPMX19_05520 0.78 -0.2 228,204 + MPMX19_05520 0.78 +0.5 228,204 + MPMX19_05520 0.78 +0.8 228,204 + MPMX19_05520 0.78 +0.5 228,205 - MPMX19_05520 0.78 -0.9 228,205 - MPMX19_05520 0.78 -1.2 228,228 + MPMX19_05520 0.82 -1.5 228,228 + MPMX19_05520 0.82 +0.1 228,228 + MPMX19_05520 0.82 -1.8 228,228 + MPMX19_05520 0.82 -2.4 228,228 + MPMX19_05520 0.82 +0.4 228,228 + MPMX19_05520 0.82 +1.8 228,228 + MPMX19_05520 0.82 -0.4 228,229 - MPMX19_05520 0.82 -1.9 228,229 - MPMX19_05520 0.82 -1.5 228,229 - MPMX19_05520 0.82 -0.8 228,229 - MPMX19_05520 0.82 -0.9 228,229 - MPMX19_05520 0.82 -2.7 228,291 + -0.0 228,292 - -1.8 228,347 + +0.3 228,348 - -0.4 228,348 - +0.0 228,348 - -1.5 228,443 + -1.0 228,443 + -1.7 228,443 + -1.8 228,443 + -0.5 228,443 + -1.6 228,443 + -0.5 228,443 + -1.3 228,443 + -1.9 228,443 + -1.5 228,443 + -1.0 228,444 - -0.2 228,444 - -0.2 228,444 - +1.3 228,444 - +0.6 228,444 - +0.1 228,444 - -0.5 228,572 + MPMX19_05521 0.38 -1.6 228,572 + MPMX19_05521 0.38 -2.1 228,572 + MPMX19_05521 0.38 -0.6 228,572 + MPMX19_05521 0.38 -1.1 228,572 + MPMX19_05521 0.38 -0.5 228,572 + MPMX19_05521 0.38 -1.2 228,573 - MPMX19_05521 0.39 +0.5 228,573 - MPMX19_05521 0.39 -1.4 228,573 - MPMX19_05521 0.39 -0.8 228,629 + MPMX19_05521 0.55 +0.4 228,644 + MPMX19_05521 0.60 -1.4 228,769 - -0.2 228,769 - +0.3 228,769 - -0.4 228,793 + -1.4 228,793 + -1.6 228,794 - -1.3 228,794 - -0.8 228,862 + -0.7 228,862 + -0.6 228,863 - -0.5 228,919 + -3.1 228,919 + -0.2 228,919 + -0.2 228,961 + +1.2 228,961 + -2.4 228,961 + -1.2 228,961 + +0.5 228,961 + +0.3 228,962 - -1.2 228,962 - -0.5 228,962 - -0.9 228,962 - -1.1 228,962 - -1.0 228,962 - -0.2 228,962 - -0.5 228,962 - -1.2 228,962 - -0.2 228,962 - -0.6 229,161 + +0.2 229,161 + -0.7 229,161 + +0.3 229,161 + -1.8 229,161 + -0.5 229,161 + +0.2 229,161 + -1.0 229,161 + +0.5 229,161 + -0.2 229,161 + -0.4 229,161 + -0.6 229,161 + -1.1 229,161 + -1.9 229,161 + -0.8 229,161 + +0.2 229,161 + -1.2 229,161 + -1.2 229,161 + +1.3 229,161 + -1.7 229,161 + +0.4 229,161 + -1.4 229,161 + -1.2 229,161 + -0.4 229,161 + -0.6 229,162 - -1.5 229,162 - +0.5
Or see this region's nucleotide sequence