Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05270 and MPMX19_05271 are separated by 95 nucleotides MPMX19_05271 and MPMX19_05272 are separated by 20 nucleotides MPMX19_05272 and MPMX19_05273 are separated by 11 nucleotides MPMX19_05273 and MPMX19_05274 are separated by 229 nucleotides MPMX19_05274 and MPMX19_05275 are separated by 13 nucleotides
MPMX19_05270: MPMX19_05270 - hypothetical protein, at 804,968 to 805,495
_05270
MPMX19_05271: MPMX19_05271 - hypothetical protein, at 805,591 to 805,746
_05271
MPMX19_05272: MPMX19_05272 - hypothetical protein, at 805,767 to 806,069
_05272
MPMX19_05273: MPMX19_05273 - hypothetical protein, at 806,081 to 806,695
_05273
MPMX19_05274: MPMX19_05274 - Nitric oxide reductase subunit C, at 806,925 to 807,377
_05274
MPMX19_05275: MPMX19_05275 - Nitric oxide reductase subunit B, at 807,391 to 808,740
_05275
Position (kb) 806
807 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 805.258 kb on + strand, within MPMX19_05270 at 805.258 kb on + strand, within MPMX19_05270 at 805.258 kb on + strand, within MPMX19_05270 at 805.258 kb on + strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.259 kb on - strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.269 kb on + strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.270 kb on - strand, within MPMX19_05270 at 805.371 kb on + strand, within MPMX19_05270 at 805.371 kb on + strand, within MPMX19_05270 at 805.371 kb on + strand, within MPMX19_05270 at 805.372 kb on - strand, within MPMX19_05270 at 805.372 kb on - strand, within MPMX19_05270 at 805.372 kb on - strand, within MPMX19_05270 at 805.372 kb on - strand, within MPMX19_05270 at 805.540 kb on + strand at 805.540 kb on + strand at 805.540 kb on + strand at 805.540 kb on + strand at 805.540 kb on + strand at 805.540 kb on + strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.541 kb on - strand at 805.546 kb on + strand at 805.547 kb on - strand at 805.547 kb on - strand at 805.547 kb on - strand at 805.599 kb on + strand at 805.679 kb on + strand, within MPMX19_05271 at 805.679 kb on + strand, within MPMX19_05271 at 805.679 kb on + strand, within MPMX19_05271 at 805.679 kb on + strand, within MPMX19_05271 at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.734 kb on + strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.735 kb on - strand at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.891 kb on + strand, within MPMX19_05272 at 805.892 kb on - strand, within MPMX19_05272 at 805.892 kb on - strand, within MPMX19_05272 at 805.892 kb on - strand, within MPMX19_05272 at 805.892 kb on - strand, within MPMX19_05272 at 806.094 kb on + strand at 806.094 kb on + strand at 806.094 kb on + strand at 806.094 kb on + strand at 806.094 kb on + strand at 806.094 kb on + strand at 806.095 kb on - strand at 806.095 kb on - strand at 806.095 kb on - strand at 806.095 kb on - strand at 806.095 kb on - strand at 806.095 kb on - strand at 806.106 kb on + strand at 806.106 kb on + strand at 806.107 kb on - strand at 806.259 kb on + strand, within MPMX19_05273 at 806.259 kb on + strand, within MPMX19_05273 at 806.259 kb on + strand, within MPMX19_05273 at 806.259 kb on + strand, within MPMX19_05273 at 806.260 kb on - strand, within MPMX19_05273 at 806.260 kb on - strand, within MPMX19_05273 at 806.260 kb on - strand, within MPMX19_05273 at 806.260 kb on - strand, within MPMX19_05273 at 806.260 kb on - strand, within MPMX19_05273 at 806.316 kb on + strand, within MPMX19_05273 at 806.316 kb on + strand, within MPMX19_05273 at 806.316 kb on + strand, within MPMX19_05273 at 806.316 kb on + strand, within MPMX19_05273 at 806.317 kb on - strand, within MPMX19_05273 at 806.317 kb on - strand, within MPMX19_05273 at 806.433 kb on + strand, within MPMX19_05273 at 806.434 kb on - strand, within MPMX19_05273 at 806.434 kb on - strand, within MPMX19_05273 at 806.723 kb on + strand at 806.723 kb on + strand at 806.723 kb on + strand at 806.724 kb on - strand at 806.724 kb on - strand at 806.724 kb on - strand at 806.735 kb on - strand at 806.797 kb on + strand at 806.797 kb on + strand at 806.797 kb on + strand at 806.798 kb on - strand at 806.798 kb on - strand at 806.818 kb on + strand at 806.818 kb on + strand at 806.818 kb on + strand at 806.818 kb on + strand at 806.819 kb on - strand at 806.819 kb on - strand at 807.027 kb on + strand, within MPMX19_05274 at 807.027 kb on + strand, within MPMX19_05274 at 807.027 kb on + strand, within MPMX19_05274 at 807.027 kb on + strand, within MPMX19_05274 at 807.027 kb on + strand, within MPMX19_05274 at 807.028 kb on - strand, within MPMX19_05274 at 807.028 kb on - strand, within MPMX19_05274 at 807.028 kb on - strand, within MPMX19_05274 at 807.051 kb on - strand, within MPMX19_05274 at 807.144 kb on + strand, within MPMX19_05274 at 807.144 kb on + strand, within MPMX19_05274 at 807.145 kb on - strand, within MPMX19_05274 at 807.145 kb on - strand, within MPMX19_05274 at 807.180 kb on + strand, within MPMX19_05274 at 807.181 kb on - strand, within MPMX19_05274 at 807.397 kb on + strand at 807.398 kb on - strand at 807.398 kb on - strand at 807.421 kb on + strand at 807.421 kb on + strand at 807.421 kb on + strand at 807.422 kb on - strand at 807.422 kb on - strand at 807.424 kb on + strand at 807.424 kb on + strand at 807.424 kb on + strand at 807.424 kb on + strand at 807.424 kb on + strand at 807.425 kb on - strand at 807.425 kb on - strand at 807.425 kb on - strand at 807.425 kb on - strand at 807.490 kb on + strand at 807.490 kb on + strand at 807.490 kb on + strand at 807.490 kb on + strand at 807.490 kb on + strand at 807.491 kb on - strand at 807.491 kb on - strand at 807.491 kb on - strand at 807.491 kb on - strand at 807.491 kb on - strand at 807.491 kb on - strand at 807.491 kb on - strand at 807.491 kb on - strand at 807.491 kb on - strand at 807.491 kb on - strand at 807.491 kb on - strand at 807.598 kb on + strand, within MPMX19_05275 at 807.598 kb on + strand, within MPMX19_05275 at 807.599 kb on - strand, within MPMX19_05275 at 807.599 kb on - strand, within MPMX19_05275 at 807.599 kb on - strand, within MPMX19_05275 at 807.601 kb on + strand, within MPMX19_05275 at 807.601 kb on + strand, within MPMX19_05275 at 807.601 kb on + strand, within MPMX19_05275 at 807.601 kb on + strand, within MPMX19_05275 at 807.601 kb on + strand, within MPMX19_05275 at 807.601 kb on + strand, within MPMX19_05275 at 807.601 kb on + strand, within MPMX19_05275 at 807.601 kb on + strand, within MPMX19_05275 at 807.602 kb on - strand, within MPMX19_05275 at 807.602 kb on - strand, within MPMX19_05275 at 807.602 kb on - strand, within MPMX19_05275 at 807.602 kb on - strand, within MPMX19_05275 at 807.602 kb on - strand, within MPMX19_05275 at 807.602 kb on - strand, within MPMX19_05275 at 807.602 kb on - strand, within MPMX19_05275 at 807.602 kb on - strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.634 kb on + strand, within MPMX19_05275 at 807.635 kb on - strand, within MPMX19_05275 at 807.635 kb on - strand, within MPMX19_05275 at 807.635 kb on - strand, within MPMX19_05275 at 807.635 kb on - strand, within MPMX19_05275 at 807.635 kb on - strand, within MPMX19_05275
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 805,258 + MPMX19_05270 0.55 -2.1 805,258 + MPMX19_05270 0.55 -2.0 805,258 + MPMX19_05270 0.55 +0.2 805,258 + MPMX19_05270 0.55 +1.2 805,259 - MPMX19_05270 0.55 -0.4 805,259 - MPMX19_05270 0.55 -1.4 805,259 - MPMX19_05270 0.55 +0.2 805,259 - MPMX19_05270 0.55 -1.0 805,259 - MPMX19_05270 0.55 +0.2 805,259 - MPMX19_05270 0.55 -0.3 805,269 + MPMX19_05270 0.57 +0.2 805,269 + MPMX19_05270 0.57 -1.4 805,269 + MPMX19_05270 0.57 -1.5 805,269 + MPMX19_05270 0.57 -0.2 805,269 + MPMX19_05270 0.57 -0.4 805,270 - MPMX19_05270 0.57 +0.2 805,270 - MPMX19_05270 0.57 -1.7 805,270 - MPMX19_05270 0.57 +0.2 805,270 - MPMX19_05270 0.57 -0.8 805,270 - MPMX19_05270 0.57 -0.3 805,371 + MPMX19_05270 0.76 +0.0 805,371 + MPMX19_05270 0.76 +1.9 805,371 + MPMX19_05270 0.76 -0.5 805,372 - MPMX19_05270 0.77 -0.0 805,372 - MPMX19_05270 0.77 -0.3 805,372 - MPMX19_05270 0.77 +0.6 805,372 - MPMX19_05270 0.77 -2.5 805,540 + -2.0 805,540 + -0.2 805,540 + -1.2 805,540 + -0.4 805,540 + +0.1 805,540 + -0.3 805,541 - -0.2 805,541 - -0.6 805,541 - -1.8 805,541 - -0.8 805,541 - +2.5 805,541 - -0.7 805,541 - -2.5 805,541 - +0.2 805,546 + -0.6 805,547 - -0.4 805,547 - -1.2 805,547 - +0.6 805,599 + -1.4 805,679 + MPMX19_05271 0.56 -0.4 805,679 + MPMX19_05271 0.56 -0.8 805,679 + MPMX19_05271 0.56 -0.8 805,679 + MPMX19_05271 0.56 -2.2 805,734 + -0.4 805,734 + +0.4 805,734 + +0.3 805,734 + -0.1 805,734 + -0.4 805,734 + -0.3 805,734 + -1.2 805,735 - +2.2 805,735 - -0.3 805,735 - +0.6 805,735 - -1.4 805,735 - -0.7 805,735 - -0.6 805,735 - -0.8 805,891 + MPMX19_05272 0.41 -1.2 805,891 + MPMX19_05272 0.41 -0.8 805,891 + MPMX19_05272 0.41 -1.4 805,891 + MPMX19_05272 0.41 -0.2 805,891 + MPMX19_05272 0.41 -0.3 805,891 + MPMX19_05272 0.41 -0.1 805,892 - MPMX19_05272 0.41 +1.9 805,892 - MPMX19_05272 0.41 -0.5 805,892 - MPMX19_05272 0.41 -0.8 805,892 - MPMX19_05272 0.41 -1.4 806,094 + -1.6 806,094 + +1.2 806,094 + -0.6 806,094 + +0.6 806,094 + -1.4 806,094 + +0.1 806,095 - +0.6 806,095 - -0.5 806,095 - -0.6 806,095 - -0.8 806,095 - +0.7 806,095 - +0.8 806,106 + +0.4 806,106 + -0.8 806,107 - +0.2 806,259 + MPMX19_05273 0.29 -0.4 806,259 + MPMX19_05273 0.29 -1.4 806,259 + MPMX19_05273 0.29 +1.7 806,259 + MPMX19_05273 0.29 -2.5 806,260 - MPMX19_05273 0.29 -1.6 806,260 - MPMX19_05273 0.29 -2.2 806,260 - MPMX19_05273 0.29 +0.2 806,260 - MPMX19_05273 0.29 +0.2 806,260 - MPMX19_05273 0.29 +0.2 806,316 + MPMX19_05273 0.38 -1.2 806,316 + MPMX19_05273 0.38 -1.2 806,316 + MPMX19_05273 0.38 +0.0 806,316 + MPMX19_05273 0.38 +0.5 806,317 - MPMX19_05273 0.38 -1.2 806,317 - MPMX19_05273 0.38 -1.8 806,433 + MPMX19_05273 0.57 -1.6 806,434 - MPMX19_05273 0.57 -1.4 806,434 - MPMX19_05273 0.57 -2.9 806,723 + -1.0 806,723 + -0.8 806,723 + -0.2 806,724 - -0.1 806,724 - -0.8 806,724 - +0.4 806,735 - +0.2 806,797 + -0.4 806,797 + -1.2 806,797 + -0.7 806,798 - +0.1 806,798 - -0.1 806,818 + -1.0 806,818 + -0.6 806,818 + +3.2 806,818 + +0.4 806,819 - -1.8 806,819 - +0.2 807,027 + MPMX19_05274 0.23 +0.2 807,027 + MPMX19_05274 0.23 +0.4 807,027 + MPMX19_05274 0.23 +0.2 807,027 + MPMX19_05274 0.23 -0.3 807,027 + MPMX19_05274 0.23 +0.7 807,028 - MPMX19_05274 0.23 +0.6 807,028 - MPMX19_05274 0.23 -0.3 807,028 - MPMX19_05274 0.23 -1.2 807,051 - MPMX19_05274 0.28 -2.0 807,144 + MPMX19_05274 0.48 -1.0 807,144 + MPMX19_05274 0.48 +0.6 807,145 - MPMX19_05274 0.49 +1.4 807,145 - MPMX19_05274 0.49 +1.2 807,180 + MPMX19_05274 0.56 +0.8 807,181 - MPMX19_05274 0.57 -1.4 807,397 + +0.6 807,398 - +0.2 807,398 - -1.0 807,421 + +0.4 807,421 + -0.4 807,421 + -0.8 807,422 - -2.4 807,422 - -1.6 807,424 + -1.4 807,424 + -0.2 807,424 + -0.2 807,424 + -0.4 807,424 + +0.0 807,425 - -1.0 807,425 - +0.6 807,425 - -1.4 807,425 - +0.9 807,490 + -0.6 807,490 + -0.4 807,490 + -0.5 807,490 + +0.2 807,490 + -0.6 807,491 - -1.2 807,491 - +0.4 807,491 - +0.7 807,491 - -0.1 807,491 - +1.4 807,491 - -0.8 807,491 - -1.8 807,491 - -0.5 807,491 - +0.4 807,491 - -0.3 807,491 - -0.3 807,598 + MPMX19_05275 0.15 +0.2 807,598 + MPMX19_05275 0.15 +0.0 807,599 - MPMX19_05275 0.15 -1.4 807,599 - MPMX19_05275 0.15 +0.2 807,599 - MPMX19_05275 0.15 -1.1 807,601 + MPMX19_05275 0.16 -0.6 807,601 + MPMX19_05275 0.16 +0.0 807,601 + MPMX19_05275 0.16 +0.3 807,601 + MPMX19_05275 0.16 -0.1 807,601 + MPMX19_05275 0.16 -1.4 807,601 + MPMX19_05275 0.16 -1.1 807,601 + MPMX19_05275 0.16 -0.8 807,601 + MPMX19_05275 0.16 -0.5 807,602 - MPMX19_05275 0.16 +0.4 807,602 - MPMX19_05275 0.16 -0.8 807,602 - MPMX19_05275 0.16 -1.6 807,602 - MPMX19_05275 0.16 -0.7 807,602 - MPMX19_05275 0.16 -0.3 807,602 - MPMX19_05275 0.16 -1.6 807,602 - MPMX19_05275 0.16 -0.8 807,602 - MPMX19_05275 0.16 +0.2 807,634 + MPMX19_05275 0.18 -1.2 807,634 + MPMX19_05275 0.18 +0.4 807,634 + MPMX19_05275 0.18 -0.9 807,634 + MPMX19_05275 0.18 -0.4 807,634 + MPMX19_05275 0.18 -1.8 807,634 + MPMX19_05275 0.18 -0.8 807,634 + MPMX19_05275 0.18 -0.6 807,634 + MPMX19_05275 0.18 -0.8 807,634 + MPMX19_05275 0.18 -0.7 807,634 + MPMX19_05275 0.18 +0.4 807,634 + MPMX19_05275 0.18 -0.2 807,635 - MPMX19_05275 0.18 +1.2 807,635 - MPMX19_05275 0.18 +0.2 807,635 - MPMX19_05275 0.18 -1.7 807,635 - MPMX19_05275 0.18 -1.3 807,635 - MPMX19_05275 0.18 +0.9
Or see this region's nucleotide sequence