Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04803

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04801 and MPMX19_04802 are separated by 304 nucleotidesMPMX19_04802 and MPMX19_04803 are separated by 84 nucleotidesMPMX19_04803 and MPMX19_04804 are separated by 153 nucleotides MPMX19_04801: MPMX19_04801 - D-inositol-3-phosphate glycosyltransferase, at 202,044 to 203,219 _04801 MPMX19_04802: MPMX19_04802 - tRNA-Met, at 203,524 to 203,600 _04802 MPMX19_04803: MPMX19_04803 - 5S ribosomal RNA, at 203,685 to 203,795 _04803 MPMX19_04804: MPMX19_04804 - 23S ribosomal RNA, at 203,949 to 206,684 _04804 Position (kb) 203 204Strain fitness (log2 ratio) -2 -1 0 1at 202.773 kb on + strand, within MPMX19_04801at 202.773 kb on + strand, within MPMX19_04801at 202.773 kb on + strand, within MPMX19_04801at 202.773 kb on + strand, within MPMX19_04801at 202.773 kb on + strand, within MPMX19_04801at 202.773 kb on + strand, within MPMX19_04801at 202.773 kb on + strand, within MPMX19_04801at 202.773 kb on + strand, within MPMX19_04801at 202.774 kb on - strand, within MPMX19_04801at 202.774 kb on - strand, within MPMX19_04801at 202.774 kb on - strand, within MPMX19_04801at 202.774 kb on - strand, within MPMX19_04801at 202.774 kb on - strand, within MPMX19_04801at 202.774 kb on - strand, within MPMX19_04801at 202.774 kb on - strand, within MPMX19_04801at 202.774 kb on - strand, within MPMX19_04801at 203.000 kb on + strand, within MPMX19_04801at 203.001 kb on - strand, within MPMX19_04801at 203.001 kb on - strand, within MPMX19_04801at 203.001 kb on - strand, within MPMX19_04801at 203.001 kb on - strand, within MPMX19_04801at 203.115 kb on + strandat 203.115 kb on + strandat 203.116 kb on - strandat 203.257 kb on + strandat 203.257 kb on + strandat 203.258 kb on - strandat 203.258 kb on - strandat 203.258 kb on - strandat 203.258 kb on - strandat 203.469 kb on - strandat 203.974 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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202,773 + MPMX19_04801 0.62 -0.1
202,773 + MPMX19_04801 0.62 -0.1
202,773 + MPMX19_04801 0.62 -0.5
202,773 + MPMX19_04801 0.62 -1.5
202,773 + MPMX19_04801 0.62 +0.2
202,773 + MPMX19_04801 0.62 -0.8
202,773 + MPMX19_04801 0.62 -0.4
202,773 + MPMX19_04801 0.62 +0.2
202,774 - MPMX19_04801 0.62 -1.4
202,774 - MPMX19_04801 0.62 +1.2
202,774 - MPMX19_04801 0.62 -0.6
202,774 - MPMX19_04801 0.62 -0.0
202,774 - MPMX19_04801 0.62 -0.4
202,774 - MPMX19_04801 0.62 +0.4
202,774 - MPMX19_04801 0.62 -1.4
202,774 - MPMX19_04801 0.62 -0.6
203,000 + MPMX19_04801 0.81 -0.8
203,001 - MPMX19_04801 0.81 -0.2
203,001 - MPMX19_04801 0.81 -1.7
203,001 - MPMX19_04801 0.81 -2.0
203,001 - MPMX19_04801 0.81 +0.2
203,115 + -2.2
203,115 + +0.4
203,116 - -0.2
203,257 + +0.2
203,257 + -0.1
203,258 - -1.4
203,258 - -1.0
203,258 - -1.2
203,258 - -0.8
203,469 - -0.8
203,974 - -1.2

Or see this region's nucleotide sequence