Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04606

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04605 and MPMX19_04606 are separated by 257 nucleotidesMPMX19_04606 and MPMX19_04607 are separated by 24 nucleotidesMPMX19_04607 and MPMX19_04608 are separated by 37 nucleotides MPMX19_04605: MPMX19_04605 - IS6 family transposase ISBj7, at 991,011 to 991,724 _04605 MPMX19_04606: MPMX19_04606 - Long-chain-alcohol dehydrogenase 1, at 991,982 to 993,136 _04606 MPMX19_04607: MPMX19_04607 - hypothetical protein, at 993,161 to 993,607 _04607 MPMX19_04608: MPMX19_04608 - 3-ketoacyl-CoA thiolase, at 993,645 to 994,847 _04608 Position (kb) 991 992 993 994Strain fitness (log2 ratio) -2 -1 0 1at 991.880 kb on + strandat 991.880 kb on + strandat 991.880 kb on + strandat 991.880 kb on + strandat 991.880 kb on + strandat 991.880 kb on + strandat 991.881 kb on - strandat 991.881 kb on - strandat 991.881 kb on - strandat 991.881 kb on - strandat 991.881 kb on - strandat 991.881 kb on - strandat 991.881 kb on - strandat 991.891 kb on - strandat 991.891 kb on - strandat 991.891 kb on - strandat 991.922 kb on - strandat 991.942 kb on + strandat 991.942 kb on + strandat 991.943 kb on - strandat 991.943 kb on - strandat 991.999 kb on - strandat 992.020 kb on - strandat 992.238 kb on + strand, within MPMX19_04606at 992.238 kb on + strand, within MPMX19_04606at 992.238 kb on + strand, within MPMX19_04606at 992.239 kb on - strand, within MPMX19_04606at 992.239 kb on - strand, within MPMX19_04606at 992.239 kb on - strand, within MPMX19_04606at 992.532 kb on + strand, within MPMX19_04606at 992.532 kb on + strand, within MPMX19_04606at 992.532 kb on + strand, within MPMX19_04606at 992.533 kb on - strand, within MPMX19_04606at 992.533 kb on - strand, within MPMX19_04606at 992.533 kb on - strand, within MPMX19_04606at 992.533 kb on - strand, within MPMX19_04606at 992.533 kb on - strand, within MPMX19_04606at 992.533 kb on - strand, within MPMX19_04606at 992.533 kb on - strand, within MPMX19_04606at 992.634 kb on + strand, within MPMX19_04606at 992.775 kb on + strand, within MPMX19_04606at 992.775 kb on + strand, within MPMX19_04606at 992.776 kb on - strand, within MPMX19_04606at 992.776 kb on - strand, within MPMX19_04606at 992.776 kb on - strand, within MPMX19_04606at 992.776 kb on - strand, within MPMX19_04606at 992.776 kb on - strand, within MPMX19_04606at 992.779 kb on + strand, within MPMX19_04606at 992.779 kb on + strand, within MPMX19_04606at 992.779 kb on + strand, within MPMX19_04606at 992.779 kb on + strand, within MPMX19_04606at 992.780 kb on - strand, within MPMX19_04606at 993.252 kb on + strand, within MPMX19_04607at 993.252 kb on + strand, within MPMX19_04607at 993.252 kb on + strand, within MPMX19_04607at 993.252 kb on + strand, within MPMX19_04607at 993.253 kb on - strand, within MPMX19_04607at 993.253 kb on - strand, within MPMX19_04607at 993.253 kb on - strand, within MPMX19_04607at 993.253 kb on - strand, within MPMX19_04607at 993.253 kb on - strand, within MPMX19_04607at 993.253 kb on - strand, within MPMX19_04607at 993.253 kb on - strand, within MPMX19_04607at 993.253 kb on - strand, within MPMX19_04607at 993.253 kb on - strand, within MPMX19_04607at 993.319 kb on - strand, within MPMX19_04607at 993.394 kb on - strand, within MPMX19_04607at 993.394 kb on - strand, within MPMX19_04607at 993.396 kb on + strand, within MPMX19_04607at 993.396 kb on + strand, within MPMX19_04607at 993.396 kb on + strand, within MPMX19_04607at 993.396 kb on + strand, within MPMX19_04607at 993.397 kb on - strand, within MPMX19_04607at 993.397 kb on - strand, within MPMX19_04607at 993.397 kb on - strand, within MPMX19_04607at 993.397 kb on - strand, within MPMX19_04607at 993.397 kb on - strand, within MPMX19_04607at 993.397 kb on - strand, within MPMX19_04607at 993.397 kb on - strand, within MPMX19_04607at 993.397 kb on - strand, within MPMX19_04607at 993.471 kb on + strand, within MPMX19_04607at 993.472 kb on - strand, within MPMX19_04607at 993.472 kb on - strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.495 kb on + strand, within MPMX19_04607at 993.496 kb on - strand, within MPMX19_04607at 993.496 kb on - strand, within MPMX19_04607at 993.496 kb on - strand, within MPMX19_04607at 993.496 kb on - strand, within MPMX19_04607at 993.496 kb on - strand, within MPMX19_04607at 993.496 kb on - strand, within MPMX19_04607at 993.496 kb on - strand, within MPMX19_04607at 993.501 kb on + strand, within MPMX19_04607at 993.501 kb on + strand, within MPMX19_04607at 993.501 kb on + strand, within MPMX19_04607at 993.501 kb on + strand, within MPMX19_04607at 993.502 kb on - strand, within MPMX19_04607at 993.502 kb on - strand, within MPMX19_04607at 993.502 kb on - strand, within MPMX19_04607at 993.504 kb on + strand, within MPMX19_04607at 993.504 kb on + strand, within MPMX19_04607at 993.505 kb on - strand, within MPMX19_04607at 993.505 kb on - strand, within MPMX19_04607at 993.505 kb on - strand, within MPMX19_04607at 993.528 kb on + strand, within MPMX19_04607at 993.528 kb on + strand, within MPMX19_04607at 993.576 kb on + strandat 993.695 kb on + strandat 993.695 kb on + strandat 993.695 kb on + strandat 993.695 kb on + strandat 993.695 kb on + strandat 993.695 kb on + strandat 993.696 kb on - strandat 993.696 kb on - strandat 993.696 kb on - strandat 993.696 kb on - strandat 993.696 kb on - strandat 993.696 kb on - strandat 993.696 kb on - strandat 993.696 kb on - strandat 993.696 kb on - strandat 993.775 kb on + strand, within MPMX19_04608at 993.855 kb on + strand, within MPMX19_04608at 993.855 kb on + strand, within MPMX19_04608at 993.855 kb on + strand, within MPMX19_04608at 993.856 kb on - strand, within MPMX19_04608at 993.856 kb on - strand, within MPMX19_04608at 993.856 kb on - strand, within MPMX19_04608at 993.856 kb on - strand, within MPMX19_04608at 993.856 kb on - strand, within MPMX19_04608at 993.856 kb on - strand, within MPMX19_04608at 993.856 kb on - strand, within MPMX19_04608

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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991,880 + -1.3
991,880 + -0.3
991,880 + -1.7
991,880 + -0.4
991,880 + -0.7
991,880 + -0.5
991,881 - +0.6
991,881 - -0.3
991,881 - -0.5
991,881 - -1.1
991,881 - -0.2
991,881 - +0.9
991,881 - -0.1
991,891 - -1.4
991,891 - -0.1
991,891 - -1.5
991,922 - +0.2
991,942 + -1.1
991,942 + -0.1
991,943 - -0.1
991,943 - -0.1
991,999 - -0.6
992,020 - -1.1
992,238 + MPMX19_04606 0.22 -0.7
992,238 + MPMX19_04606 0.22 -0.7
992,238 + MPMX19_04606 0.22 +0.9
992,239 - MPMX19_04606 0.22 -1.1
992,239 - MPMX19_04606 0.22 -0.2
992,239 - MPMX19_04606 0.22 +0.1
992,532 + MPMX19_04606 0.48 -0.7
992,532 + MPMX19_04606 0.48 -0.3
992,532 + MPMX19_04606 0.48 -1.4
992,533 - MPMX19_04606 0.48 -0.5
992,533 - MPMX19_04606 0.48 -0.7
992,533 - MPMX19_04606 0.48 +0.7
992,533 - MPMX19_04606 0.48 -1.5
992,533 - MPMX19_04606 0.48 -1.6
992,533 - MPMX19_04606 0.48 -0.4
992,533 - MPMX19_04606 0.48 -1.8
992,634 + MPMX19_04606 0.56 -0.9
992,775 + MPMX19_04606 0.69 -0.1
992,775 + MPMX19_04606 0.69 +0.3
992,776 - MPMX19_04606 0.69 -0.2
992,776 - MPMX19_04606 0.69 -1.7
992,776 - MPMX19_04606 0.69 -1.1
992,776 - MPMX19_04606 0.69 -0.7
992,776 - MPMX19_04606 0.69 -1.3
992,779 + MPMX19_04606 0.69 +0.9
992,779 + MPMX19_04606 0.69 +0.7
992,779 + MPMX19_04606 0.69 -1.3
992,779 + MPMX19_04606 0.69 -0.1
992,780 - MPMX19_04606 0.69 +0.3
993,252 + MPMX19_04607 0.20 -2.3
993,252 + MPMX19_04607 0.20 -1.6
993,252 + MPMX19_04607 0.20 -1.4
993,252 + MPMX19_04607 0.20 -0.7
993,253 - MPMX19_04607 0.21 -1.1
993,253 - MPMX19_04607 0.21 +0.5
993,253 - MPMX19_04607 0.21 +0.0
993,253 - MPMX19_04607 0.21 -1.3
993,253 - MPMX19_04607 0.21 +0.6
993,253 - MPMX19_04607 0.21 -1.3
993,253 - MPMX19_04607 0.21 -1.6
993,253 - MPMX19_04607 0.21 +0.2
993,253 - MPMX19_04607 0.21 -0.4
993,319 - MPMX19_04607 0.35 -1.1
993,394 - MPMX19_04607 0.52 +0.3
993,394 - MPMX19_04607 0.52 +0.0
993,396 + MPMX19_04607 0.53 -1.4
993,396 + MPMX19_04607 0.53 -0.7
993,396 + MPMX19_04607 0.53 +0.9
993,396 + MPMX19_04607 0.53 -1.5
993,397 - MPMX19_04607 0.53 +0.1
993,397 - MPMX19_04607 0.53 +0.7
993,397 - MPMX19_04607 0.53 -2.6
993,397 - MPMX19_04607 0.53 -0.1
993,397 - MPMX19_04607 0.53 -1.7
993,397 - MPMX19_04607 0.53 -1.3
993,397 - MPMX19_04607 0.53 -0.4
993,397 - MPMX19_04607 0.53 -0.7
993,471 + MPMX19_04607 0.69 +0.9
993,472 - MPMX19_04607 0.70 -1.4
993,472 - MPMX19_04607 0.70 -2.4
993,495 + MPMX19_04607 0.75 -0.3
993,495 + MPMX19_04607 0.75 -0.7
993,495 + MPMX19_04607 0.75 -0.1
993,495 + MPMX19_04607 0.75 -1.1
993,495 + MPMX19_04607 0.75 -1.7
993,495 + MPMX19_04607 0.75 +0.9
993,495 + MPMX19_04607 0.75 +0.1
993,495 + MPMX19_04607 0.75 -0.3
993,495 + MPMX19_04607 0.75 -0.8
993,495 + MPMX19_04607 0.75 -0.7
993,495 + MPMX19_04607 0.75 -1.4
993,495 + MPMX19_04607 0.75 -1.3
993,496 - MPMX19_04607 0.75 +0.6
993,496 - MPMX19_04607 0.75 +0.1
993,496 - MPMX19_04607 0.75 -1.2
993,496 - MPMX19_04607 0.75 +0.6
993,496 - MPMX19_04607 0.75 -0.7
993,496 - MPMX19_04607 0.75 -0.7
993,496 - MPMX19_04607 0.75 -0.1
993,501 + MPMX19_04607 0.76 -0.6
993,501 + MPMX19_04607 0.76 -0.5
993,501 + MPMX19_04607 0.76 -0.9
993,501 + MPMX19_04607 0.76 -1.7
993,502 - MPMX19_04607 0.76 -1.1
993,502 - MPMX19_04607 0.76 -0.9
993,502 - MPMX19_04607 0.76 +0.9
993,504 + MPMX19_04607 0.77 -1.1
993,504 + MPMX19_04607 0.77 -0.4
993,505 - MPMX19_04607 0.77 +0.9
993,505 - MPMX19_04607 0.77 -0.1
993,505 - MPMX19_04607 0.77 -1.1
993,528 + MPMX19_04607 0.82 -2.1
993,528 + MPMX19_04607 0.82 +0.4
993,576 + -1.1
993,695 + -0.7
993,695 + -1.6
993,695 + -0.7
993,695 + -0.5
993,695 + -0.4
993,695 + +0.4
993,696 - -0.8
993,696 - -2.1
993,696 - +0.6
993,696 - -1.1
993,696 - +0.5
993,696 - -0.1
993,696 - +0.3
993,696 - -1.7
993,696 - +0.1
993,775 + MPMX19_04608 0.11 -0.4
993,855 + MPMX19_04608 0.17 -1.1
993,855 + MPMX19_04608 0.17 -0.3
993,855 + MPMX19_04608 0.17 -1.0
993,856 - MPMX19_04608 0.18 -0.4
993,856 - MPMX19_04608 0.18 +0.1
993,856 - MPMX19_04608 0.18 -1.1
993,856 - MPMX19_04608 0.18 -0.8
993,856 - MPMX19_04608 0.18 -1.9
993,856 - MPMX19_04608 0.18 +0.3
993,856 - MPMX19_04608 0.18 +0.5

Or see this region's nucleotide sequence