Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04584

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04582 and MPMX19_04583 are separated by 66 nucleotidesMPMX19_04583 and MPMX19_04584 are separated by 46 nucleotidesMPMX19_04584 and MPMX19_04585 are separated by 15 nucleotides MPMX19_04582: MPMX19_04582 - hypothetical protein, at 959,935 to 962,364 _04582 MPMX19_04583: MPMX19_04583 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 962,431 to 963,120 _04583 MPMX19_04584: MPMX19_04584 - Lipopolysaccharide export system ATP-binding protein LptB, at 963,167 to 963,913 _04584 MPMX19_04585: MPMX19_04585 - hypothetical protein, at 963,929 to 965,089 _04585 Position (kb) 963 964Strain fitness (log2 ratio) -3 -2 -1 0 1at 962.226 kb on + strandat 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.882 kb on + strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.883 kb on - strand, within MPMX19_04583at 962.909 kb on + strand, within MPMX19_04583at 962.909 kb on + strand, within MPMX19_04583at 962.910 kb on - strand, within MPMX19_04583at 962.910 kb on - strand, within MPMX19_04583at 962.910 kb on - strand, within MPMX19_04583at 962.910 kb on - strand, within MPMX19_04583at 962.910 kb on - strand, within MPMX19_04583at 962.910 kb on - strand, within MPMX19_04583at 963.089 kb on + strandat 963.090 kb on - strandat 963.468 kb on + strand, within MPMX19_04584at 963.469 kb on - strand, within MPMX19_04584at 963.592 kb on - strand, within MPMX19_04584at 963.630 kb on + strand, within MPMX19_04584at 963.630 kb on + strand, within MPMX19_04584at 963.630 kb on + strand, within MPMX19_04584at 963.825 kb on + strand, within MPMX19_04584at 963.826 kb on - strand, within MPMX19_04584at 963.826 kb on - strand, within MPMX19_04584at 963.826 kb on - strand, within MPMX19_04584at 963.895 kb on - strandat 963.895 kb on - strandat 964.026 kb on + strandat 964.027 kb on - strandat 964.027 kb on - strandat 964.027 kb on - strandat 964.027 kb on - strandat 964.027 kb on - strandat 964.027 kb on - strandat 964.156 kb on - strand, within MPMX19_04585at 964.156 kb on - strand, within MPMX19_04585at 964.197 kb on + strand, within MPMX19_04585at 964.197 kb on + strand, within MPMX19_04585at 964.197 kb on + strand, within MPMX19_04585at 964.198 kb on - strand, within MPMX19_04585at 964.198 kb on - strand, within MPMX19_04585at 964.198 kb on - strand, within MPMX19_04585at 964.413 kb on + strand, within MPMX19_04585at 964.413 kb on + strand, within MPMX19_04585at 964.413 kb on + strand, within MPMX19_04585at 964.413 kb on + strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.414 kb on - strand, within MPMX19_04585at 964.461 kb on + strand, within MPMX19_04585at 964.461 kb on + strand, within MPMX19_04585at 964.461 kb on + strand, within MPMX19_04585at 964.461 kb on + strand, within MPMX19_04585at 964.461 kb on + strand, within MPMX19_04585at 964.461 kb on + strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.462 kb on - strand, within MPMX19_04585at 964.545 kb on + strand, within MPMX19_04585at 964.546 kb on - strand, within MPMX19_04585at 964.546 kb on - strand, within MPMX19_04585at 964.546 kb on - strand, within MPMX19_04585at 964.546 kb on - strand, within MPMX19_04585at 964.612 kb on - strand, within MPMX19_04585at 964.612 kb on - strand, within MPMX19_04585at 964.843 kb on - strand, within MPMX19_04585

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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962,226 + -0.1
962,882 + MPMX19_04583 0.65 -0.9
962,882 + MPMX19_04583 0.65 -0.9
962,882 + MPMX19_04583 0.65 -0.1
962,882 + MPMX19_04583 0.65 -1.7
962,882 + MPMX19_04583 0.65 -0.7
962,882 + MPMX19_04583 0.65 -0.5
962,882 + MPMX19_04583 0.65 -0.7
962,882 + MPMX19_04583 0.65 -0.1
962,882 + MPMX19_04583 0.65 +0.5
962,882 + MPMX19_04583 0.65 -2.9
962,882 + MPMX19_04583 0.65 -2.9
962,882 + MPMX19_04583 0.65 -1.4
962,882 + MPMX19_04583 0.65 -1.1
962,883 - MPMX19_04583 0.66 -1.9
962,883 - MPMX19_04583 0.66 -0.7
962,883 - MPMX19_04583 0.66 -0.6
962,883 - MPMX19_04583 0.66 -0.1
962,883 - MPMX19_04583 0.66 +0.1
962,883 - MPMX19_04583 0.66 -2.0
962,883 - MPMX19_04583 0.66 -0.7
962,909 + MPMX19_04583 0.69 -0.7
962,909 + MPMX19_04583 0.69 -2.7
962,910 - MPMX19_04583 0.69 +0.9
962,910 - MPMX19_04583 0.69 -0.1
962,910 - MPMX19_04583 0.69 -0.6
962,910 - MPMX19_04583 0.69 -1.2
962,910 - MPMX19_04583 0.69 -0.8
962,910 - MPMX19_04583 0.69 -0.3
963,089 + +0.4
963,090 - -0.1
963,468 + MPMX19_04584 0.40 -0.1
963,469 - MPMX19_04584 0.40 -0.3
963,592 - MPMX19_04584 0.57 -1.7
963,630 + MPMX19_04584 0.62 -1.8
963,630 + MPMX19_04584 0.62 +0.9
963,630 + MPMX19_04584 0.62 -1.1
963,825 + MPMX19_04584 0.88 -2.3
963,826 - MPMX19_04584 0.88 -1.6
963,826 - MPMX19_04584 0.88 +0.1
963,826 - MPMX19_04584 0.88 -1.1
963,895 - -0.7
963,895 - +0.4
964,026 + -0.4
964,027 - -0.3
964,027 - -1.0
964,027 - -0.1
964,027 - +1.3
964,027 - -2.4
964,027 - -1.4
964,156 - MPMX19_04585 0.20 -1.3
964,156 - MPMX19_04585 0.20 -1.1
964,197 + MPMX19_04585 0.23 -1.7
964,197 + MPMX19_04585 0.23 -0.7
964,197 + MPMX19_04585 0.23 -1.2
964,198 - MPMX19_04585 0.23 +1.0
964,198 - MPMX19_04585 0.23 -1.1
964,198 - MPMX19_04585 0.23 +0.1
964,413 + MPMX19_04585 0.42 -2.4
964,413 + MPMX19_04585 0.42 +0.9
964,413 + MPMX19_04585 0.42 -1.4
964,413 + MPMX19_04585 0.42 -1.1
964,414 - MPMX19_04585 0.42 -0.9
964,414 - MPMX19_04585 0.42 -0.1
964,414 - MPMX19_04585 0.42 -0.1
964,414 - MPMX19_04585 0.42 -1.7
964,414 - MPMX19_04585 0.42 -0.6
964,414 - MPMX19_04585 0.42 -1.9
964,414 - MPMX19_04585 0.42 +0.1
964,414 - MPMX19_04585 0.42 +0.5
964,461 + MPMX19_04585 0.46 +0.5
964,461 + MPMX19_04585 0.46 +0.9
964,461 + MPMX19_04585 0.46 -0.7
964,461 + MPMX19_04585 0.46 -1.4
964,461 + MPMX19_04585 0.46 +1.1
964,461 + MPMX19_04585 0.46 -1.4
964,462 - MPMX19_04585 0.46 +0.9
964,462 - MPMX19_04585 0.46 +0.6
964,462 - MPMX19_04585 0.46 -1.1
964,462 - MPMX19_04585 0.46 -0.1
964,462 - MPMX19_04585 0.46 -1.9
964,462 - MPMX19_04585 0.46 -2.8
964,462 - MPMX19_04585 0.46 -0.3
964,462 - MPMX19_04585 0.46 +0.5
964,545 + MPMX19_04585 0.53 -0.5
964,546 - MPMX19_04585 0.53 -0.7
964,546 - MPMX19_04585 0.53 +0.9
964,546 - MPMX19_04585 0.53 -1.1
964,546 - MPMX19_04585 0.53 +0.5
964,612 - MPMX19_04585 0.59 -1.7
964,612 - MPMX19_04585 0.59 +0.1
964,843 - MPMX19_04585 0.79 -0.5

Or see this region's nucleotide sequence