Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04206 and MPMX19_04207 are separated by 200 nucleotides MPMX19_04207 and MPMX19_04208 are separated by 142 nucleotides MPMX19_04208 and MPMX19_04209 overlap by 4 nucleotides
MPMX19_04206: MPMX19_04206 - 3-oxoacyl-[acyl-carrier-protein] synthase 3, at 539,152 to 540,210
_04206
MPMX19_04207: MPMX19_04207 - hypothetical protein, at 540,411 to 542,273
_04207
MPMX19_04208: MPMX19_04208 - flagellum biosynthesis repressor protein FlbT, at 542,416 to 542,862
_04208
MPMX19_04209: MPMX19_04209 - Lipopolysaccharide assembly protein B, at 542,859 to 548,912
_04209
Position (kb) 540
541
542
543 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 539.524 kb on + strand, within MPMX19_04206 at 539.524 kb on + strand, within MPMX19_04206 at 539.524 kb on + strand, within MPMX19_04206 at 539.524 kb on + strand, within MPMX19_04206 at 539.525 kb on - strand, within MPMX19_04206 at 539.525 kb on - strand, within MPMX19_04206 at 539.734 kb on + strand, within MPMX19_04206 at 539.734 kb on + strand, within MPMX19_04206 at 539.734 kb on + strand, within MPMX19_04206 at 539.734 kb on + strand, within MPMX19_04206 at 539.734 kb on + strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.735 kb on - strand, within MPMX19_04206 at 539.822 kb on + strand, within MPMX19_04206 at 539.822 kb on + strand, within MPMX19_04206 at 539.823 kb on - strand, within MPMX19_04206 at 539.823 kb on - strand, within MPMX19_04206 at 540.275 kb on + strand at 540.275 kb on + strand at 540.275 kb on + strand at 540.276 kb on - strand at 540.276 kb on - strand at 540.338 kb on + strand at 540.338 kb on + strand at 540.338 kb on + strand at 540.339 kb on - strand at 540.339 kb on - strand at 540.339 kb on - strand at 540.339 kb on - strand at 540.339 kb on - strand at 540.407 kb on + strand at 540.407 kb on + strand at 540.407 kb on + strand at 540.408 kb on - strand at 540.408 kb on - strand at 540.408 kb on - strand at 540.426 kb on - strand at 540.816 kb on + strand, within MPMX19_04207 at 540.817 kb on - strand, within MPMX19_04207 at 540.817 kb on - strand, within MPMX19_04207 at 540.817 kb on - strand, within MPMX19_04207 at 540.946 kb on - strand, within MPMX19_04207 at 540.946 kb on - strand, within MPMX19_04207 at 540.946 kb on - strand, within MPMX19_04207 at 541.161 kb on + strand, within MPMX19_04207 at 541.161 kb on + strand, within MPMX19_04207 at 541.162 kb on - strand, within MPMX19_04207 at 541.162 kb on - strand, within MPMX19_04207 at 541.162 kb on - strand, within MPMX19_04207 at 541.162 kb on - strand, within MPMX19_04207 at 541.162 kb on - strand, within MPMX19_04207 at 541.162 kb on - strand, within MPMX19_04207 at 542.271 kb on + strand at 542.271 kb on + strand at 542.271 kb on + strand at 542.271 kb on + strand at 542.271 kb on + strand at 542.271 kb on + strand at 542.278 kb on + strand at 542.278 kb on + strand at 542.278 kb on + strand at 542.278 kb on + strand at 542.278 kb on + strand at 542.278 kb on + strand at 542.279 kb on - strand at 542.279 kb on - strand at 542.303 kb on - strand at 542.411 kb on + strand at 542.411 kb on + strand at 542.509 kb on + strand, within MPMX19_04208 at 542.510 kb on - strand, within MPMX19_04208 at 542.584 kb on + strand, within MPMX19_04208 at 542.605 kb on + strand, within MPMX19_04208 at 542.606 kb on - strand, within MPMX19_04208 at 542.734 kb on + strand, within MPMX19_04208 at 542.735 kb on - strand, within MPMX19_04208 at 542.735 kb on - strand, within MPMX19_04208 at 542.735 kb on - strand, within MPMX19_04208 at 542.735 kb on - strand, within MPMX19_04208 at 542.735 kb on - strand, within MPMX19_04208 at 542.802 kb on + strand, within MPMX19_04208 at 542.803 kb on - strand, within MPMX19_04208 at 542.803 kb on - strand, within MPMX19_04208 at 543.078 kb on + strand at 543.078 kb on + strand at 543.078 kb on + strand at 543.078 kb on + strand at 543.078 kb on + strand at 543.078 kb on + strand at 543.078 kb on + strand at 543.079 kb on - strand at 543.079 kb on - strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.138 kb on + strand at 543.139 kb on - strand at 543.139 kb on - strand at 543.139 kb on - strand at 543.139 kb on - strand at 543.139 kb on - strand at 543.139 kb on - strand at 543.168 kb on + strand at 543.168 kb on + strand at 543.168 kb on + strand at 543.168 kb on + strand at 543.168 kb on + strand at 543.169 kb on - strand at 543.169 kb on - strand at 543.169 kb on - strand at 543.169 kb on - strand at 543.169 kb on - strand at 543.169 kb on - strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.180 kb on + strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.181 kb on - strand at 543.240 kb on + strand at 543.240 kb on + strand at 543.240 kb on + strand at 543.240 kb on + strand at 543.240 kb on + strand at 543.241 kb on - strand at 543.241 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 539,524 + MPMX19_04206 0.35 +0.4 539,524 + MPMX19_04206 0.35 +0.0 539,524 + MPMX19_04206 0.35 +0.4 539,524 + MPMX19_04206 0.35 -1.3 539,525 - MPMX19_04206 0.35 +1.4 539,525 - MPMX19_04206 0.35 -1.8 539,734 + MPMX19_04206 0.55 -0.9 539,734 + MPMX19_04206 0.55 +1.0 539,734 + MPMX19_04206 0.55 -0.7 539,734 + MPMX19_04206 0.55 -0.2 539,734 + MPMX19_04206 0.55 -1.1 539,735 - MPMX19_04206 0.55 -0.6 539,735 - MPMX19_04206 0.55 +0.2 539,735 - MPMX19_04206 0.55 +0.0 539,735 - MPMX19_04206 0.55 +0.6 539,735 - MPMX19_04206 0.55 +1.8 539,735 - MPMX19_04206 0.55 -2.0 539,735 - MPMX19_04206 0.55 -0.6 539,735 - MPMX19_04206 0.55 -1.3 539,735 - MPMX19_04206 0.55 +0.0 539,735 - MPMX19_04206 0.55 -0.3 539,735 - MPMX19_04206 0.55 -1.8 539,735 - MPMX19_04206 0.55 -0.3 539,822 + MPMX19_04206 0.63 +0.0 539,822 + MPMX19_04206 0.63 -0.8 539,823 - MPMX19_04206 0.63 -0.3 539,823 - MPMX19_04206 0.63 -0.3 540,275 + +0.0 540,275 + -1.2 540,275 + -1.6 540,276 - -0.6 540,276 - -1.9 540,338 + -1.0 540,338 + +0.4 540,338 + +0.0 540,339 - +1.0 540,339 - -0.2 540,339 - -1.3 540,339 - -1.1 540,339 - -0.2 540,407 + -1.6 540,407 + -1.0 540,407 + -0.3 540,408 - -1.6 540,408 - +0.4 540,408 - -0.3 540,426 - -2.2 540,816 + MPMX19_04207 0.22 +0.0 540,817 - MPMX19_04207 0.22 -1.6 540,817 - MPMX19_04207 0.22 -2.8 540,817 - MPMX19_04207 0.22 -1.7 540,946 - MPMX19_04207 0.29 -1.1 540,946 - MPMX19_04207 0.29 -0.6 540,946 - MPMX19_04207 0.29 -0.3 541,161 + MPMX19_04207 0.40 -1.0 541,161 + MPMX19_04207 0.40 -0.3 541,162 - MPMX19_04207 0.40 +0.3 541,162 - MPMX19_04207 0.40 -0.9 541,162 - MPMX19_04207 0.40 -1.3 541,162 - MPMX19_04207 0.40 -0.6 541,162 - MPMX19_04207 0.40 -2.1 541,162 - MPMX19_04207 0.40 -2.6 542,271 + +1.4 542,271 + -1.1 542,271 + -2.0 542,271 + +0.3 542,271 + +1.0 542,271 + -2.3 542,278 + +0.6 542,278 + -1.3 542,278 + -1.1 542,278 + -1.4 542,278 + +0.0 542,278 + -0.6 542,279 - +0.3 542,279 - -1.0 542,303 - -1.0 542,411 + -1.1 542,411 + -1.0 542,509 + MPMX19_04208 0.21 +0.0 542,510 - MPMX19_04208 0.21 -0.4 542,584 + MPMX19_04208 0.38 -1.7 542,605 + MPMX19_04208 0.42 -1.7 542,606 - MPMX19_04208 0.43 -1.8 542,734 + MPMX19_04208 0.71 -1.6 542,735 - MPMX19_04208 0.71 -2.9 542,735 - MPMX19_04208 0.71 -0.8 542,735 - MPMX19_04208 0.71 +1.0 542,735 - MPMX19_04208 0.71 +0.1 542,735 - MPMX19_04208 0.71 +0.3 542,802 + MPMX19_04208 0.86 +0.2 542,803 - MPMX19_04208 0.87 -1.0 542,803 - MPMX19_04208 0.87 -1.3 543,078 + -0.6 543,078 + -1.7 543,078 + +0.3 543,078 + -0.1 543,078 + -0.6 543,078 + -1.3 543,078 + +0.7 543,079 - +0.0 543,079 - -0.5 543,138 + -0.2 543,138 + +0.0 543,138 + +0.0 543,138 + -0.8 543,138 + +0.4 543,138 + -1.0 543,138 + -1.2 543,138 + -0.6 543,138 + -0.6 543,138 + -1.6 543,138 + +0.2 543,138 + -0.6 543,138 + -0.5 543,138 + -2.1 543,138 + -1.0 543,138 + +0.1 543,139 - +0.0 543,139 - -1.0 543,139 - -0.9 543,139 - -1.0 543,139 - -0.3 543,139 - +0.1 543,168 + -0.2 543,168 + +1.0 543,168 + -1.3 543,168 + -0.3 543,168 + -1.0 543,169 - +0.3 543,169 - +0.2 543,169 - +1.6 543,169 - +1.6 543,169 - +1.0 543,169 - +2.0 543,180 + +0.0 543,180 + +0.0 543,180 + +0.3 543,180 + -0.8 543,180 + +0.8 543,180 + -1.0 543,180 + -1.6 543,180 + -0.2 543,180 + -0.1 543,180 + -0.7 543,180 + +0.8 543,180 + +0.7 543,180 + +0.0 543,181 - -0.8 543,181 - +0.4 543,181 - +1.0 543,181 - -0.6 543,181 - +1.0 543,181 - +1.0 543,181 - -1.3 543,181 - +0.8 543,181 - -1.6 543,181 - +1.0 543,240 + -0.8 543,240 + -1.1 543,240 + +0.5 543,240 + +0.7 543,240 + -1.3 543,241 - +1.0 543,241 - +1.0
Or see this region's nucleotide sequence