Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04160

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04159 and MPMX19_04160 are separated by 195 nucleotidesMPMX19_04160 and MPMX19_04161 are separated by 58 nucleotidesMPMX19_04161 and MPMX19_04162 are separated by 124 nucleotides MPMX19_04159: MPMX19_04159 - D-inositol-3-phosphate glycosyltransferase, at 475,495 to 476,808 _04159 MPMX19_04160: MPMX19_04160 - hypothetical protein, at 477,004 to 478,191 _04160 MPMX19_04161: MPMX19_04161 - hypothetical protein, at 478,250 to 479,044 _04161 MPMX19_04162: MPMX19_04162 - Transcription-repair-coupling factor, at 479,169 to 482,582 _04162 Position (kb) 477 478 479Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 476.071 kb on + strand, within MPMX19_04159at 476.071 kb on + strand, within MPMX19_04159at 476.071 kb on + strand, within MPMX19_04159at 476.071 kb on + strand, within MPMX19_04159at 476.071 kb on + strand, within MPMX19_04159at 476.071 kb on + strand, within MPMX19_04159at 476.072 kb on - strand, within MPMX19_04159at 476.072 kb on - strand, within MPMX19_04159at 476.072 kb on - strand, within MPMX19_04159at 476.072 kb on - strand, within MPMX19_04159at 476.072 kb on - strand, within MPMX19_04159at 476.072 kb on - strand, within MPMX19_04159at 476.104 kb on + strand, within MPMX19_04159at 476.105 kb on - strand, within MPMX19_04159at 476.356 kb on + strand, within MPMX19_04159at 476.356 kb on + strand, within MPMX19_04159at 476.356 kb on + strand, within MPMX19_04159at 476.357 kb on - strand, within MPMX19_04159at 476.410 kb on + strand, within MPMX19_04159at 476.410 kb on + strand, within MPMX19_04159at 476.411 kb on - strand, within MPMX19_04159at 476.419 kb on + strand, within MPMX19_04159at 476.419 kb on + strand, within MPMX19_04159at 476.419 kb on + strand, within MPMX19_04159at 476.419 kb on + strand, within MPMX19_04159at 476.420 kb on - strand, within MPMX19_04159at 476.420 kb on - strand, within MPMX19_04159at 476.806 kb on + strandat 476.852 kb on + strandat 476.853 kb on - strandat 476.855 kb on + strandat 476.876 kb on + strandat 476.976 kb on - strandat 477.043 kb on + strandat 477.043 kb on + strandat 477.044 kb on - strandat 477.044 kb on - strandat 477.067 kb on + strandat 477.073 kb on + strandat 477.073 kb on + strandat 477.073 kb on + strandat 477.074 kb on - strandat 477.103 kb on + strandat 477.157 kb on + strand, within MPMX19_04160at 477.157 kb on + strand, within MPMX19_04160at 477.157 kb on + strand, within MPMX19_04160at 477.158 kb on - strand, within MPMX19_04160at 477.158 kb on - strand, within MPMX19_04160at 477.226 kb on + strand, within MPMX19_04160at 477.226 kb on + strand, within MPMX19_04160at 477.226 kb on + strand, within MPMX19_04160at 477.226 kb on + strand, within MPMX19_04160at 477.226 kb on + strand, within MPMX19_04160at 477.226 kb on + strand, within MPMX19_04160at 477.226 kb on + strand, within MPMX19_04160at 477.232 kb on + strand, within MPMX19_04160at 477.232 kb on + strand, within MPMX19_04160at 477.232 kb on + strand, within MPMX19_04160at 477.232 kb on + strand, within MPMX19_04160at 477.233 kb on - strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.256 kb on + strand, within MPMX19_04160at 477.257 kb on - strand, within MPMX19_04160at 477.257 kb on - strand, within MPMX19_04160at 477.257 kb on - strand, within MPMX19_04160at 477.257 kb on - strand, within MPMX19_04160at 477.257 kb on - strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.445 kb on + strand, within MPMX19_04160at 477.446 kb on - strand, within MPMX19_04160at 477.446 kb on - strand, within MPMX19_04160at 477.446 kb on - strand, within MPMX19_04160at 477.607 kb on + strand, within MPMX19_04160at 477.607 kb on + strand, within MPMX19_04160at 477.608 kb on - strand, within MPMX19_04160at 477.628 kb on + strand, within MPMX19_04160at 477.629 kb on - strand, within MPMX19_04160at 477.793 kb on + strand, within MPMX19_04160at 477.793 kb on + strand, within MPMX19_04160at 477.794 kb on - strand, within MPMX19_04160at 477.794 kb on - strand, within MPMX19_04160at 477.794 kb on - strand, within MPMX19_04160at 477.820 kb on + strand, within MPMX19_04160at 477.820 kb on + strand, within MPMX19_04160at 477.820 kb on + strand, within MPMX19_04160at 477.820 kb on + strand, within MPMX19_04160at 477.820 kb on + strand, within MPMX19_04160at 477.839 kb on - strand, within MPMX19_04160at 477.839 kb on - strand, within MPMX19_04160at 477.859 kb on + strand, within MPMX19_04160at 477.859 kb on + strand, within MPMX19_04160at 477.860 kb on - strand, within MPMX19_04160at 477.949 kb on + strand, within MPMX19_04160at 477.949 kb on + strand, within MPMX19_04160at 477.949 kb on + strand, within MPMX19_04160at 477.958 kb on + strand, within MPMX19_04160at 477.958 kb on + strand, within MPMX19_04160at 477.958 kb on + strand, within MPMX19_04160at 477.958 kb on + strand, within MPMX19_04160at 477.958 kb on + strand, within MPMX19_04160at 477.958 kb on + strand, within MPMX19_04160at 477.958 kb on + strand, within MPMX19_04160at 477.958 kb on + strand, within MPMX19_04160at 477.958 kb on + strand, within MPMX19_04160at 477.958 kb on + strand, within MPMX19_04160at 477.959 kb on - strand, within MPMX19_04160at 478.006 kb on + strand, within MPMX19_04160at 478.006 kb on + strand, within MPMX19_04160at 478.006 kb on + strand, within MPMX19_04160at 478.006 kb on + strand, within MPMX19_04160at 478.007 kb on - strand, within MPMX19_04160at 478.007 kb on - strand, within MPMX19_04160at 478.007 kb on - strand, within MPMX19_04160at 478.015 kb on + strand, within MPMX19_04160at 478.015 kb on + strand, within MPMX19_04160at 478.045 kb on + strand, within MPMX19_04160at 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.084 kb on + strandat 478.085 kb on - strandat 478.085 kb on - strandat 478.085 kb on - strandat 478.085 kb on - strandat 478.085 kb on - strandat 478.085 kb on - strandat 478.087 kb on + strandat 478.087 kb on + strandat 478.087 kb on + strandat 478.096 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.129 kb on + strandat 478.130 kb on - strandat 478.130 kb on - strandat 478.130 kb on - strandat 478.130 kb on - strandat 478.130 kb on - strandat 478.130 kb on - strandat 478.130 kb on - strandat 478.130 kb on - strandat 478.189 kb on + strandat 478.189 kb on + strandat 478.190 kb on - strandat 478.190 kb on - strandat 478.190 kb on - strandat 478.342 kb on + strand, within MPMX19_04161at 478.342 kb on + strand, within MPMX19_04161at 478.342 kb on + strand, within MPMX19_04161at 478.342 kb on + strand, within MPMX19_04161at 478.342 kb on + strand, within MPMX19_04161at 478.343 kb on - strand, within MPMX19_04161at 478.343 kb on - strand, within MPMX19_04161at 478.343 kb on - strand, within MPMX19_04161at 479.061 kb on - strandat 479.061 kb on - strandat 479.072 kb on + strandat 479.072 kb on + strandat 479.072 kb on + strandat 479.073 kb on - strandat 479.073 kb on - strandat 479.073 kb on - strandat 479.101 kb on + strandat 479.101 kb on + strandat 479.102 kb on - strandat 479.102 kb on - strandat 479.150 kb on + strandat 479.150 kb on + strandat 479.150 kb on + strandat 479.150 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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476,071 + MPMX19_04159 0.44 +0.5
476,071 + MPMX19_04159 0.44 -1.3
476,071 + MPMX19_04159 0.44 +0.3
476,071 + MPMX19_04159 0.44 -0.2
476,071 + MPMX19_04159 0.44 -1.3
476,071 + MPMX19_04159 0.44 +0.6
476,072 - MPMX19_04159 0.44 -2.3
476,072 - MPMX19_04159 0.44 -0.4
476,072 - MPMX19_04159 0.44 -0.3
476,072 - MPMX19_04159 0.44 -1.1
476,072 - MPMX19_04159 0.44 +0.4
476,072 - MPMX19_04159 0.44 -1.6
476,104 + MPMX19_04159 0.46 -0.6
476,105 - MPMX19_04159 0.46 -0.4
476,356 + MPMX19_04159 0.66 +0.4
476,356 + MPMX19_04159 0.66 -1.1
476,356 + MPMX19_04159 0.66 -2.7
476,357 - MPMX19_04159 0.66 -1.0
476,410 + MPMX19_04159 0.70 +1.0
476,410 + MPMX19_04159 0.70 -0.6
476,411 - MPMX19_04159 0.70 +0.3
476,419 + MPMX19_04159 0.70 -1.6
476,419 + MPMX19_04159 0.70 +1.0
476,419 + MPMX19_04159 0.70 -0.5
476,419 + MPMX19_04159 0.70 -1.0
476,420 - MPMX19_04159 0.70 -0.8
476,420 - MPMX19_04159 0.70 -2.6
476,806 + -0.6
476,852 + +1.7
476,853 - +0.0
476,855 + +0.3
476,876 + -0.2
476,976 - +0.4
477,043 + +0.6
477,043 + -0.7
477,044 - -0.2
477,044 - +0.0
477,067 + +1.0
477,073 + +0.0
477,073 + +0.0
477,073 + +0.0
477,074 - +0.6
477,103 + -0.9
477,157 + MPMX19_04160 0.13 -0.6
477,157 + MPMX19_04160 0.13 -0.4
477,157 + MPMX19_04160 0.13 -0.1
477,158 - MPMX19_04160 0.13 +0.0
477,158 - MPMX19_04160 0.13 +0.0
477,226 + MPMX19_04160 0.19 -0.6
477,226 + MPMX19_04160 0.19 -0.1
477,226 + MPMX19_04160 0.19 -1.0
477,226 + MPMX19_04160 0.19 -1.6
477,226 + MPMX19_04160 0.19 +0.0
477,226 + MPMX19_04160 0.19 +1.0
477,226 + MPMX19_04160 0.19 -1.7
477,232 + MPMX19_04160 0.19 +1.0
477,232 + MPMX19_04160 0.19 -2.5
477,232 + MPMX19_04160 0.19 +0.5
477,232 + MPMX19_04160 0.19 -0.6
477,233 - MPMX19_04160 0.19 -1.0
477,256 + MPMX19_04160 0.21 -0.9
477,256 + MPMX19_04160 0.21 -1.7
477,256 + MPMX19_04160 0.21 -0.2
477,256 + MPMX19_04160 0.21 -0.6
477,256 + MPMX19_04160 0.21 +0.0
477,256 + MPMX19_04160 0.21 +1.0
477,256 + MPMX19_04160 0.21 -2.2
477,256 + MPMX19_04160 0.21 +0.4
477,256 + MPMX19_04160 0.21 -2.0
477,256 + MPMX19_04160 0.21 -1.0
477,256 + MPMX19_04160 0.21 -1.8
477,256 + MPMX19_04160 0.21 -1.0
477,257 - MPMX19_04160 0.21 -1.0
477,257 - MPMX19_04160 0.21 +1.0
477,257 - MPMX19_04160 0.21 +1.0
477,257 - MPMX19_04160 0.21 -1.3
477,257 - MPMX19_04160 0.21 +0.3
477,445 + MPMX19_04160 0.37 -1.6
477,445 + MPMX19_04160 0.37 -2.2
477,445 + MPMX19_04160 0.37 -2.0
477,445 + MPMX19_04160 0.37 -3.6
477,445 + MPMX19_04160 0.37 -1.5
477,445 + MPMX19_04160 0.37 +1.0
477,445 + MPMX19_04160 0.37 -0.6
477,445 + MPMX19_04160 0.37 -0.4
477,445 + MPMX19_04160 0.37 -0.3
477,445 + MPMX19_04160 0.37 -0.7
477,445 + MPMX19_04160 0.37 +0.0
477,445 + MPMX19_04160 0.37 -1.3
477,446 - MPMX19_04160 0.37 -1.3
477,446 - MPMX19_04160 0.37 -1.6
477,446 - MPMX19_04160 0.37 -0.6
477,607 + MPMX19_04160 0.51 -1.3
477,607 + MPMX19_04160 0.51 -0.6
477,608 - MPMX19_04160 0.51 -1.3
477,628 + MPMX19_04160 0.53 +0.4
477,629 - MPMX19_04160 0.53 -1.0
477,793 + MPMX19_04160 0.66 -0.6
477,793 + MPMX19_04160 0.66 +1.0
477,794 - MPMX19_04160 0.66 +0.0
477,794 - MPMX19_04160 0.66 -1.0
477,794 - MPMX19_04160 0.66 +0.0
477,820 + MPMX19_04160 0.69 -0.2
477,820 + MPMX19_04160 0.69 -1.8
477,820 + MPMX19_04160 0.69 -1.0
477,820 + MPMX19_04160 0.69 -0.6
477,820 + MPMX19_04160 0.69 -1.1
477,839 - MPMX19_04160 0.70 -0.6
477,839 - MPMX19_04160 0.70 -0.8
477,859 + MPMX19_04160 0.72 -0.6
477,859 + MPMX19_04160 0.72 -1.6
477,860 - MPMX19_04160 0.72 +0.0
477,949 + MPMX19_04160 0.80 -1.0
477,949 + MPMX19_04160 0.80 -1.8
477,949 + MPMX19_04160 0.80 -1.3
477,958 + MPMX19_04160 0.80 -0.4
477,958 + MPMX19_04160 0.80 -0.4
477,958 + MPMX19_04160 0.80 +0.2
477,958 + MPMX19_04160 0.80 -0.3
477,958 + MPMX19_04160 0.80 -0.6
477,958 + MPMX19_04160 0.80 -0.8
477,958 + MPMX19_04160 0.80 +0.0
477,958 + MPMX19_04160 0.80 -1.5
477,958 + MPMX19_04160 0.80 -1.3
477,958 + MPMX19_04160 0.80 -1.3
477,959 - MPMX19_04160 0.80 -1.3
478,006 + MPMX19_04160 0.84 -1.3
478,006 + MPMX19_04160 0.84 -0.4
478,006 + MPMX19_04160 0.84 -1.3
478,006 + MPMX19_04160 0.84 -0.8
478,007 - MPMX19_04160 0.84 -0.6
478,007 - MPMX19_04160 0.84 -1.0
478,007 - MPMX19_04160 0.84 +0.0
478,015 + MPMX19_04160 0.85 -1.0
478,015 + MPMX19_04160 0.85 +0.5
478,045 + MPMX19_04160 0.88 +0.0
478,084 + +0.7
478,084 + +0.4
478,084 + +0.0
478,084 + -1.6
478,084 + -0.3
478,084 + -1.0
478,084 + -1.3
478,084 + +0.0
478,084 + -0.6
478,084 + -2.3
478,084 + -0.8
478,084 + -0.5
478,084 + -0.7
478,084 + -1.2
478,084 + +1.0
478,085 - -0.8
478,085 - -1.3
478,085 - -0.6
478,085 - -0.6
478,085 - -1.6
478,085 - +0.3
478,087 + -1.3
478,087 + -0.4
478,087 + -1.8
478,096 + +2.0
478,129 + +0.0
478,129 + +0.2
478,129 + -0.3
478,129 + -0.6
478,129 + +0.6
478,129 + -1.6
478,129 + -1.3
478,129 + -0.6
478,129 + +0.4
478,129 + -1.0
478,129 + -1.0
478,129 + -1.3
478,129 + -0.4
478,129 + +0.0
478,129 + +0.4
478,129 + -0.6
478,129 + +0.4
478,129 + -1.0
478,129 + -1.6
478,129 + +0.0
478,130 - +0.5
478,130 - -0.2
478,130 - -1.3
478,130 - -1.3
478,130 - +0.2
478,130 - -1.0
478,130 - -1.3
478,130 - -1.8
478,189 + -0.6
478,189 + +1.6
478,190 - -1.2
478,190 - -1.8
478,190 - -1.0
478,342 + MPMX19_04161 0.12 +0.2
478,342 + MPMX19_04161 0.12 +0.8
478,342 + MPMX19_04161 0.12 +0.6
478,342 + MPMX19_04161 0.12 -0.2
478,342 + MPMX19_04161 0.12 +0.4
478,343 - MPMX19_04161 0.12 -0.3
478,343 - MPMX19_04161 0.12 -1.3
478,343 - MPMX19_04161 0.12 +0.3
479,061 - +2.0
479,061 - +0.2
479,072 + -0.6
479,072 + -0.6
479,072 + -1.5
479,073 - -0.2
479,073 - -0.3
479,073 - +1.0
479,101 + +0.3
479,101 + +0.7
479,102 - +0.3
479,102 - -0.6
479,150 + -1.6
479,150 + -1.3
479,150 + -0.3
479,150 + -1.8

Or see this region's nucleotide sequence