Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03987

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03986 and MPMX19_03987 are separated by 10 nucleotidesMPMX19_03987 and MPMX19_03988 are separated by 724 nucleotides MPMX19_03986: MPMX19_03986 - hypothetical protein, at 278,162 to 279,256 _03986 MPMX19_03987: MPMX19_03987 - hypothetical protein, at 279,267 to 279,737 _03987 MPMX19_03988: MPMX19_03988 - hypothetical protein, at 280,462 to 280,689 _03988 Position (kb) 279 280Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 278.293 kb on - strand, within MPMX19_03986at 278.322 kb on + strand, within MPMX19_03986at 278.323 kb on - strand, within MPMX19_03986at 278.325 kb on - strand, within MPMX19_03986at 278.325 kb on - strand, within MPMX19_03986at 278.370 kb on + strand, within MPMX19_03986at 278.371 kb on - strand, within MPMX19_03986at 278.371 kb on - strand, within MPMX19_03986at 278.371 kb on - strand, within MPMX19_03986at 278.372 kb on + strand, within MPMX19_03986at 278.372 kb on + strand, within MPMX19_03986at 278.372 kb on + strand, within MPMX19_03986at 278.372 kb on + strand, within MPMX19_03986at 278.373 kb on - strand, within MPMX19_03986at 278.373 kb on - strand, within MPMX19_03986at 278.373 kb on - strand, within MPMX19_03986at 278.373 kb on - strand, within MPMX19_03986at 278.373 kb on - strand, within MPMX19_03986at 278.373 kb on - strand, within MPMX19_03986at 278.373 kb on - strand, within MPMX19_03986at 278.373 kb on - strand, within MPMX19_03986at 278.373 kb on - strand, within MPMX19_03986at 278.373 kb on - strand, within MPMX19_03986at 278.410 kb on + strand, within MPMX19_03986at 278.445 kb on + strand, within MPMX19_03986at 278.445 kb on + strand, within MPMX19_03986at 278.446 kb on - strand, within MPMX19_03986at 278.446 kb on - strand, within MPMX19_03986at 278.446 kb on - strand, within MPMX19_03986at 278.452 kb on + strand, within MPMX19_03986at 278.461 kb on - strand, within MPMX19_03986at 278.464 kb on - strand, within MPMX19_03986at 278.489 kb on + strand, within MPMX19_03986at 278.489 kb on + strand, within MPMX19_03986at 278.489 kb on + strand, within MPMX19_03986at 278.490 kb on - strand, within MPMX19_03986at 278.540 kb on + strand, within MPMX19_03986at 278.540 kb on + strand, within MPMX19_03986at 278.540 kb on + strand, within MPMX19_03986at 278.541 kb on - strand, within MPMX19_03986at 278.601 kb on + strand, within MPMX19_03986at 278.601 kb on + strand, within MPMX19_03986at 278.601 kb on + strand, within MPMX19_03986at 278.602 kb on - strand, within MPMX19_03986at 278.602 kb on - strand, within MPMX19_03986at 278.602 kb on - strand, within MPMX19_03986at 278.602 kb on - strand, within MPMX19_03986at 278.602 kb on - strand, within MPMX19_03986at 278.602 kb on - strand, within MPMX19_03986at 278.664 kb on + strand, within MPMX19_03986at 278.664 kb on + strand, within MPMX19_03986at 278.664 kb on + strand, within MPMX19_03986at 278.664 kb on + strand, within MPMX19_03986at 278.665 kb on - strand, within MPMX19_03986at 278.701 kb on + strand, within MPMX19_03986at 278.710 kb on + strand, within MPMX19_03986at 278.710 kb on + strand, within MPMX19_03986at 278.711 kb on - strand, within MPMX19_03986at 278.745 kb on + strand, within MPMX19_03986at 278.745 kb on + strand, within MPMX19_03986at 278.746 kb on - strand, within MPMX19_03986at 278.797 kb on + strand, within MPMX19_03986at 278.797 kb on + strand, within MPMX19_03986at 278.797 kb on + strand, within MPMX19_03986at 278.797 kb on + strand, within MPMX19_03986at 278.797 kb on + strand, within MPMX19_03986at 278.798 kb on - strand, within MPMX19_03986at 278.798 kb on - strand, within MPMX19_03986at 278.798 kb on - strand, within MPMX19_03986at 278.798 kb on - strand, within MPMX19_03986at 278.798 kb on - strand, within MPMX19_03986at 278.841 kb on + strand, within MPMX19_03986at 278.841 kb on + strand, within MPMX19_03986at 278.841 kb on + strand, within MPMX19_03986at 278.841 kb on + strand, within MPMX19_03986at 278.841 kb on + strand, within MPMX19_03986at 278.841 kb on + strand, within MPMX19_03986at 278.841 kb on + strand, within MPMX19_03986at 278.841 kb on + strand, within MPMX19_03986at 278.841 kb on + strand, within MPMX19_03986at 278.842 kb on - strand, within MPMX19_03986at 278.842 kb on - strand, within MPMX19_03986at 278.842 kb on - strand, within MPMX19_03986at 278.842 kb on - strand, within MPMX19_03986at 278.842 kb on - strand, within MPMX19_03986at 278.842 kb on - strand, within MPMX19_03986at 278.842 kb on - strand, within MPMX19_03986at 278.842 kb on - strand, within MPMX19_03986at 278.842 kb on - strand, within MPMX19_03986at 278.842 kb on - strand, within MPMX19_03986at 278.842 kb on - strand, within MPMX19_03986at 278.842 kb on - strand, within MPMX19_03986at 278.842 kb on - strand, within MPMX19_03986at 278.883 kb on + strand, within MPMX19_03986at 278.884 kb on - strand, within MPMX19_03986at 278.953 kb on + strand, within MPMX19_03986at 278.953 kb on + strand, within MPMX19_03986at 278.953 kb on + strand, within MPMX19_03986at 278.953 kb on + strand, within MPMX19_03986at 278.953 kb on + strand, within MPMX19_03986at 278.953 kb on + strand, within MPMX19_03986at 278.954 kb on - strand, within MPMX19_03986at 278.954 kb on - strand, within MPMX19_03986at 278.954 kb on - strand, within MPMX19_03986at 278.954 kb on - strand, within MPMX19_03986at 278.954 kb on - strand, within MPMX19_03986at 279.034 kb on + strand, within MPMX19_03986at 279.034 kb on + strand, within MPMX19_03986at 279.034 kb on + strand, within MPMX19_03986at 279.035 kb on - strand, within MPMX19_03986at 279.035 kb on - strand, within MPMX19_03986at 279.035 kb on - strand, within MPMX19_03986at 279.078 kb on + strand, within MPMX19_03986at 279.079 kb on - strand, within MPMX19_03986at 279.225 kb on + strandat 279.266 kb on + strandat 279.266 kb on + strandat 279.266 kb on + strandat 279.282 kb on + strandat 279.282 kb on + strandat 279.283 kb on - strandat 279.283 kb on - strandat 279.483 kb on + strand, within MPMX19_03987at 279.483 kb on + strand, within MPMX19_03987at 279.483 kb on + strand, within MPMX19_03987at 279.483 kb on + strand, within MPMX19_03987at 279.484 kb on - strand, within MPMX19_03987at 279.484 kb on - strand, within MPMX19_03987at 279.540 kb on + strand, within MPMX19_03987at 279.540 kb on + strand, within MPMX19_03987at 279.540 kb on + strand, within MPMX19_03987at 279.541 kb on - strand, within MPMX19_03987at 279.541 kb on - strand, within MPMX19_03987at 279.688 kb on + strand, within MPMX19_03987at 279.688 kb on + strand, within MPMX19_03987at 279.688 kb on + strand, within MPMX19_03987at 279.689 kb on - strand, within MPMX19_03987at 279.689 kb on - strand, within MPMX19_03987at 279.689 kb on - strand, within MPMX19_03987at 279.689 kb on - strand, within MPMX19_03987at 279.689 kb on - strand, within MPMX19_03987at 279.730 kb on + strandat 279.731 kb on - strandat 279.731 kb on - strandat 279.782 kb on + strandat 279.782 kb on + strandat 279.782 kb on + strandat 279.782 kb on + strandat 279.783 kb on - strandat 279.783 kb on - strandat 279.824 kb on + strandat 279.824 kb on + strandat 279.824 kb on + strandat 279.825 kb on - strandat 279.825 kb on - strandat 279.825 kb on - strandat 279.825 kb on - strandat 279.853 kb on + strandat 279.853 kb on + strandat 279.853 kb on + strandat 279.853 kb on + strandat 279.854 kb on - strandat 279.854 kb on - strandat 279.854 kb on - strandat 279.854 kb on - strandat 279.854 kb on - strandat 279.854 kb on - strandat 279.854 kb on - strandat 279.854 kb on - strandat 279.862 kb on - strandat 279.862 kb on - strandat 279.862 kb on - strandat 279.911 kb on - strandat 279.911 kb on - strandat 280.102 kb on + strandat 280.102 kb on + strandat 280.102 kb on + strandat 280.103 kb on - strandat 280.103 kb on - strandat 280.103 kb on - strandat 280.316 kb on + strandat 280.316 kb on + strandat 280.316 kb on + strandat 280.316 kb on + strandat 280.316 kb on + strandat 280.316 kb on + strandat 280.316 kb on + strandat 280.316 kb on + strandat 280.316 kb on + strandat 280.316 kb on + strandat 280.316 kb on + strandat 280.316 kb on + strandat 280.317 kb on - strandat 280.317 kb on - strandat 280.317 kb on - strandat 280.317 kb on - strandat 280.317 kb on - strandat 280.317 kb on - strandat 280.317 kb on - strandat 280.317 kb on - strandat 280.317 kb on - strandat 280.317 kb on - strandat 280.317 kb on - strandat 280.438 kb on + strandat 280.438 kb on + strandat 280.438 kb on + strandat 280.438 kb on + strandat 280.439 kb on - strandat 280.439 kb on - strandat 280.439 kb on - strandat 280.439 kb on - strandat 280.439 kb on - strandat 280.439 kb on - strandat 280.439 kb on - strandat 280.439 kb on - strandat 280.737 kb on + strandat 280.737 kb on + strandat 280.737 kb on + strandat 280.737 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
278,293 - MPMX19_03986 0.12 -1.5
278,322 + MPMX19_03986 0.15 -1.1
278,323 - MPMX19_03986 0.15 +0.5
278,325 - MPMX19_03986 0.15 -2.1
278,325 - MPMX19_03986 0.15 +0.1
278,370 + MPMX19_03986 0.19 -2.1
278,371 - MPMX19_03986 0.19 -0.7
278,371 - MPMX19_03986 0.19 -1.7
278,371 - MPMX19_03986 0.19 +0.1
278,372 + MPMX19_03986 0.19 +0.6
278,372 + MPMX19_03986 0.19 -0.1
278,372 + MPMX19_03986 0.19 +0.2
278,372 + MPMX19_03986 0.19 -0.5
278,373 - MPMX19_03986 0.19 -0.3
278,373 - MPMX19_03986 0.19 -1.7
278,373 - MPMX19_03986 0.19 +0.1
278,373 - MPMX19_03986 0.19 -0.4
278,373 - MPMX19_03986 0.19 -2.2
278,373 - MPMX19_03986 0.19 -0.7
278,373 - MPMX19_03986 0.19 +1.2
278,373 - MPMX19_03986 0.19 -0.2
278,373 - MPMX19_03986 0.19 -0.7
278,373 - MPMX19_03986 0.19 -1.8
278,410 + MPMX19_03986 0.23 -0.1
278,445 + MPMX19_03986 0.26 -0.7
278,445 + MPMX19_03986 0.26 -0.4
278,446 - MPMX19_03986 0.26 -0.9
278,446 - MPMX19_03986 0.26 -0.7
278,446 - MPMX19_03986 0.26 -2.2
278,452 + MPMX19_03986 0.26 -1.1
278,461 - MPMX19_03986 0.27 -0.6
278,464 - MPMX19_03986 0.28 -0.7
278,489 + MPMX19_03986 0.30 +0.1
278,489 + MPMX19_03986 0.30 -1.3
278,489 + MPMX19_03986 0.30 -1.4
278,490 - MPMX19_03986 0.30 -0.5
278,540 + MPMX19_03986 0.35 -2.1
278,540 + MPMX19_03986 0.35 -2.4
278,540 + MPMX19_03986 0.35 +0.1
278,541 - MPMX19_03986 0.35 -0.9
278,601 + MPMX19_03986 0.40 -1.8
278,601 + MPMX19_03986 0.40 -1.2
278,601 + MPMX19_03986 0.40 -1.2
278,602 - MPMX19_03986 0.40 -2.2
278,602 - MPMX19_03986 0.40 -1.2
278,602 - MPMX19_03986 0.40 -0.7
278,602 - MPMX19_03986 0.40 -2.1
278,602 - MPMX19_03986 0.40 -0.7
278,602 - MPMX19_03986 0.40 -2.1
278,664 + MPMX19_03986 0.46 +0.2
278,664 + MPMX19_03986 0.46 -1.4
278,664 + MPMX19_03986 0.46 -0.3
278,664 + MPMX19_03986 0.46 +0.3
278,665 - MPMX19_03986 0.46 -1.3
278,701 + MPMX19_03986 0.49 +0.6
278,710 + MPMX19_03986 0.50 +0.3
278,710 + MPMX19_03986 0.50 -1.4
278,711 - MPMX19_03986 0.50 -1.1
278,745 + MPMX19_03986 0.53 +0.2
278,745 + MPMX19_03986 0.53 +0.0
278,746 - MPMX19_03986 0.53 -0.1
278,797 + MPMX19_03986 0.58 -0.9
278,797 + MPMX19_03986 0.58 -0.3
278,797 + MPMX19_03986 0.58 -0.1
278,797 + MPMX19_03986 0.58 +0.1
278,797 + MPMX19_03986 0.58 +1.7
278,798 - MPMX19_03986 0.58 -1.4
278,798 - MPMX19_03986 0.58 -2.1
278,798 - MPMX19_03986 0.58 -0.4
278,798 - MPMX19_03986 0.58 -1.9
278,798 - MPMX19_03986 0.58 +1.5
278,841 + MPMX19_03986 0.62 +0.1
278,841 + MPMX19_03986 0.62 -3.2
278,841 + MPMX19_03986 0.62 -1.2
278,841 + MPMX19_03986 0.62 +0.5
278,841 + MPMX19_03986 0.62 +0.9
278,841 + MPMX19_03986 0.62 -1.2
278,841 + MPMX19_03986 0.62 +0.2
278,841 + MPMX19_03986 0.62 -0.1
278,841 + MPMX19_03986 0.62 -1.1
278,842 - MPMX19_03986 0.62 -0.1
278,842 - MPMX19_03986 0.62 +0.1
278,842 - MPMX19_03986 0.62 -1.5
278,842 - MPMX19_03986 0.62 +0.1
278,842 - MPMX19_03986 0.62 -1.3
278,842 - MPMX19_03986 0.62 -0.5
278,842 - MPMX19_03986 0.62 -0.4
278,842 - MPMX19_03986 0.62 -0.1
278,842 - MPMX19_03986 0.62 -1.4
278,842 - MPMX19_03986 0.62 -0.1
278,842 - MPMX19_03986 0.62 -1.4
278,842 - MPMX19_03986 0.62 -1.8
278,842 - MPMX19_03986 0.62 -1.7
278,883 + MPMX19_03986 0.66 -0.5
278,884 - MPMX19_03986 0.66 -1.8
278,953 + MPMX19_03986 0.72 +0.3
278,953 + MPMX19_03986 0.72 +0.9
278,953 + MPMX19_03986 0.72 +1.7
278,953 + MPMX19_03986 0.72 -1.9
278,953 + MPMX19_03986 0.72 +0.9
278,953 + MPMX19_03986 0.72 -0.7
278,954 - MPMX19_03986 0.72 -0.1
278,954 - MPMX19_03986 0.72 -0.4
278,954 - MPMX19_03986 0.72 +0.9
278,954 - MPMX19_03986 0.72 -1.9
278,954 - MPMX19_03986 0.72 -2.1
279,034 + MPMX19_03986 0.80 +0.6
279,034 + MPMX19_03986 0.80 -1.4
279,034 + MPMX19_03986 0.80 +0.9
279,035 - MPMX19_03986 0.80 -1.1
279,035 - MPMX19_03986 0.80 -2.5
279,035 - MPMX19_03986 0.80 -1.1
279,078 + MPMX19_03986 0.84 -1.4
279,079 - MPMX19_03986 0.84 -1.1
279,225 + -1.1
279,266 + -1.1
279,266 + -0.3
279,266 + +0.1
279,282 + -0.1
279,282 + +0.9
279,283 - -0.8
279,283 - +1.9
279,483 + MPMX19_03987 0.46 -1.6
279,483 + MPMX19_03987 0.46 -1.5
279,483 + MPMX19_03987 0.46 -0.5
279,483 + MPMX19_03987 0.46 -0.5
279,484 - MPMX19_03987 0.46 -2.1
279,484 - MPMX19_03987 0.46 -2.2
279,540 + MPMX19_03987 0.58 +0.3
279,540 + MPMX19_03987 0.58 -0.4
279,540 + MPMX19_03987 0.58 -0.7
279,541 - MPMX19_03987 0.58 -0.7
279,541 - MPMX19_03987 0.58 -1.7
279,688 + MPMX19_03987 0.89 -0.7
279,688 + MPMX19_03987 0.89 -0.5
279,688 + MPMX19_03987 0.89 -1.7
279,689 - MPMX19_03987 0.90 -0.7
279,689 - MPMX19_03987 0.90 +0.5
279,689 - MPMX19_03987 0.90 -0.7
279,689 - MPMX19_03987 0.90 -1.7
279,689 - MPMX19_03987 0.90 -2.2
279,730 + +0.3
279,731 - -0.5
279,731 - -2.7
279,782 + -2.2
279,782 + +0.1
279,782 + +0.7
279,782 + -0.1
279,783 - -0.1
279,783 - -1.1
279,824 + -0.5
279,824 + -0.1
279,824 + +1.3
279,825 - -0.7
279,825 - +0.3
279,825 - +0.6
279,825 - -0.9
279,853 + -0.1
279,853 + -1.2
279,853 + -0.3
279,853 + -0.7
279,854 - -0.3
279,854 - -1.1
279,854 - -0.1
279,854 - -0.9
279,854 - +0.1
279,854 - -0.7
279,854 - +0.3
279,854 - +0.3
279,862 - -0.3
279,862 - +0.6
279,862 - -0.3
279,911 - -0.1
279,911 - +0.2
280,102 + -0.1
280,102 + -0.4
280,102 + +1.3
280,103 - -1.9
280,103 - -0.1
280,103 - +0.9
280,316 + -0.7
280,316 + -0.8
280,316 + -1.1
280,316 + -0.7
280,316 + -1.1
280,316 + -1.7
280,316 + +0.6
280,316 + +0.4
280,316 + -0.4
280,316 + -0.3
280,316 + -1.1
280,316 + +0.6
280,317 - -1.4
280,317 - -1.1
280,317 - -0.7
280,317 - -1.9
280,317 - -1.2
280,317 - -1.1
280,317 - -1.1
280,317 - -1.9
280,317 - -1.2
280,317 - -1.1
280,317 - -0.8
280,438 + -0.9
280,438 + -1.2
280,438 + +0.9
280,438 + -0.1
280,439 - -1.1
280,439 - -0.4
280,439 - +1.5
280,439 - -1.2
280,439 - -2.1
280,439 - +0.8
280,439 - -0.5
280,439 - +0.9
280,737 + -1.5
280,737 + -0.5
280,737 + -0.1
280,737 + +0.4

Or see this region's nucleotide sequence