Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03850

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03849 and MPMX19_03850 are separated by 496 nucleotidesMPMX19_03850 and MPMX19_03851 are separated by 181 nucleotides MPMX19_03849: MPMX19_03849 - 1,4-alpha-glucan branching enzyme GlgB, at 88,990 to 91,290 _03849 MPMX19_03850: MPMX19_03850 - Glycogen operon protein GlgX, at 91,787 to 93,925 _03850 MPMX19_03851: MPMX19_03851 - hypothetical protein, at 94,107 to 95,192 _03851 Position (kb) 91 92 93 94Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 91.288 kb on + strandat 91.288 kb on + strandat 91.288 kb on + strandat 91.288 kb on + strandat 91.288 kb on + strandat 91.288 kb on + strandat 91.364 kb on + strandat 91.364 kb on + strandat 91.364 kb on + strandat 91.364 kb on + strandat 91.364 kb on + strandat 91.364 kb on + strandat 91.364 kb on + strandat 91.364 kb on + strandat 91.364 kb on + strandat 91.365 kb on - strandat 91.365 kb on - strandat 91.512 kb on + strandat 91.512 kb on + strandat 91.512 kb on + strandat 91.513 kb on - strandat 91.757 kb on + strandat 91.757 kb on + strandat 91.757 kb on + strandat 91.757 kb on + strandat 91.757 kb on + strandat 91.758 kb on - strandat 91.758 kb on - strandat 91.758 kb on - strandat 91.758 kb on - strandat 91.758 kb on - strandat 91.758 kb on - strandat 91.758 kb on - strandat 91.988 kb on + strandat 91.988 kb on + strandat 91.989 kb on - strandat 91.989 kb on - strandat 91.989 kb on - strandat 91.989 kb on - strandat 91.989 kb on - strandat 91.989 kb on - strandat 92.018 kb on + strand, within MPMX19_03850at 92.018 kb on + strand, within MPMX19_03850at 92.018 kb on + strand, within MPMX19_03850at 92.019 kb on - strand, within MPMX19_03850at 92.042 kb on + strand, within MPMX19_03850at 92.042 kb on + strand, within MPMX19_03850at 92.043 kb on - strand, within MPMX19_03850at 92.043 kb on - strand, within MPMX19_03850at 92.096 kb on + strand, within MPMX19_03850at 92.175 kb on + strand, within MPMX19_03850at 92.175 kb on + strand, within MPMX19_03850at 92.176 kb on - strand, within MPMX19_03850at 92.176 kb on - strand, within MPMX19_03850at 92.176 kb on - strand, within MPMX19_03850at 92.176 kb on - strand, within MPMX19_03850at 92.176 kb on - strand, within MPMX19_03850at 92.176 kb on - strand, within MPMX19_03850at 92.291 kb on + strand, within MPMX19_03850at 92.291 kb on + strand, within MPMX19_03850at 92.291 kb on + strand, within MPMX19_03850at 92.291 kb on + strand, within MPMX19_03850at 92.292 kb on - strand, within MPMX19_03850at 92.292 kb on - strand, within MPMX19_03850at 92.292 kb on - strand, within MPMX19_03850at 92.292 kb on - strand, within MPMX19_03850at 92.292 kb on - strand, within MPMX19_03850at 92.390 kb on + strand, within MPMX19_03850at 92.391 kb on - strand, within MPMX19_03850at 92.391 kb on - strand, within MPMX19_03850at 92.391 kb on - strand, within MPMX19_03850at 92.391 kb on - strand, within MPMX19_03850at 92.391 kb on - strand, within MPMX19_03850at 92.483 kb on + strand, within MPMX19_03850at 92.483 kb on + strand, within MPMX19_03850at 92.483 kb on + strand, within MPMX19_03850at 92.483 kb on + strand, within MPMX19_03850at 92.484 kb on - strand, within MPMX19_03850at 92.484 kb on - strand, within MPMX19_03850at 92.484 kb on - strand, within MPMX19_03850at 92.484 kb on - strand, within MPMX19_03850at 92.484 kb on - strand, within MPMX19_03850at 92.484 kb on - strand, within MPMX19_03850at 92.484 kb on - strand, within MPMX19_03850at 92.484 kb on - strand, within MPMX19_03850at 92.492 kb on + strand, within MPMX19_03850at 92.492 kb on + strand, within MPMX19_03850at 92.492 kb on + strand, within MPMX19_03850at 92.493 kb on - strand, within MPMX19_03850at 92.493 kb on - strand, within MPMX19_03850at 92.493 kb on - strand, within MPMX19_03850at 92.528 kb on + strand, within MPMX19_03850at 92.528 kb on + strand, within MPMX19_03850at 92.528 kb on + strand, within MPMX19_03850at 92.528 kb on + strand, within MPMX19_03850at 92.528 kb on + strand, within MPMX19_03850at 92.528 kb on + strand, within MPMX19_03850at 92.528 kb on + strand, within MPMX19_03850at 92.528 kb on + strand, within MPMX19_03850at 92.528 kb on + strand, within MPMX19_03850at 92.528 kb on + strand, within MPMX19_03850at 92.528 kb on + strand, within MPMX19_03850at 92.529 kb on - strand, within MPMX19_03850at 92.529 kb on - strand, within MPMX19_03850at 92.529 kb on - strand, within MPMX19_03850at 92.529 kb on - strand, within MPMX19_03850at 92.529 kb on - strand, within MPMX19_03850at 92.529 kb on - strand, within MPMX19_03850at 92.529 kb on - strand, within MPMX19_03850at 92.529 kb on - strand, within MPMX19_03850at 92.529 kb on - strand, within MPMX19_03850at 92.529 kb on - strand, within MPMX19_03850at 92.615 kb on + strand, within MPMX19_03850at 92.616 kb on - strand, within MPMX19_03850at 92.616 kb on - strand, within MPMX19_03850at 92.616 kb on - strand, within MPMX19_03850at 92.684 kb on + strand, within MPMX19_03850at 92.684 kb on + strand, within MPMX19_03850at 92.684 kb on + strand, within MPMX19_03850at 92.684 kb on + strand, within MPMX19_03850at 92.684 kb on + strand, within MPMX19_03850at 92.684 kb on + strand, within MPMX19_03850at 92.684 kb on + strand, within MPMX19_03850at 92.684 kb on + strand, within MPMX19_03850at 92.684 kb on + strand, within MPMX19_03850at 92.684 kb on + strand, within MPMX19_03850at 92.684 kb on + strand, within MPMX19_03850at 92.684 kb on + strand, within MPMX19_03850at 92.684 kb on + strand, within MPMX19_03850at 92.684 kb on + strand, within MPMX19_03850at 92.685 kb on - strand, within MPMX19_03850at 92.685 kb on - strand, within MPMX19_03850at 92.685 kb on - strand, within MPMX19_03850at 92.685 kb on - strand, within MPMX19_03850at 92.685 kb on - strand, within MPMX19_03850at 92.685 kb on - strand, within MPMX19_03850at 92.685 kb on - strand, within MPMX19_03850at 92.685 kb on - strand, within MPMX19_03850at 92.685 kb on - strand, within MPMX19_03850at 92.685 kb on - strand, within MPMX19_03850at 92.714 kb on + strand, within MPMX19_03850at 92.715 kb on - strand, within MPMX19_03850at 92.717 kb on + strand, within MPMX19_03850at 92.717 kb on + strand, within MPMX19_03850at 92.717 kb on + strand, within MPMX19_03850at 92.717 kb on + strand, within MPMX19_03850at 92.717 kb on + strand, within MPMX19_03850at 92.717 kb on + strand, within MPMX19_03850at 92.717 kb on + strand, within MPMX19_03850at 92.717 kb on + strand, within MPMX19_03850at 92.717 kb on + strand, within MPMX19_03850at 92.717 kb on + strand, within MPMX19_03850at 92.717 kb on + strand, within MPMX19_03850at 92.717 kb on + strand, within MPMX19_03850at 92.718 kb on - strand, within MPMX19_03850at 92.718 kb on - strand, within MPMX19_03850at 92.718 kb on - strand, within MPMX19_03850at 92.718 kb on - strand, within MPMX19_03850at 92.718 kb on - strand, within MPMX19_03850at 92.718 kb on - strand, within MPMX19_03850at 92.718 kb on - strand, within MPMX19_03850at 92.718 kb on - strand, within MPMX19_03850at 92.718 kb on - strand, within MPMX19_03850at 92.718 kb on - strand, within MPMX19_03850at 92.718 kb on - strand, within MPMX19_03850at 92.718 kb on - strand, within MPMX19_03850at 92.799 kb on - strand, within MPMX19_03850at 92.868 kb on - strand, within MPMX19_03850at 92.873 kb on + strand, within MPMX19_03850at 92.972 kb on + strand, within MPMX19_03850at 93.041 kb on + strand, within MPMX19_03850at 93.042 kb on - strand, within MPMX19_03850at 93.191 kb on + strand, within MPMX19_03850at 93.191 kb on + strand, within MPMX19_03850at 93.192 kb on - strand, within MPMX19_03850at 93.192 kb on - strand, within MPMX19_03850at 93.419 kb on + strand, within MPMX19_03850at 93.419 kb on + strand, within MPMX19_03850at 93.420 kb on - strand, within MPMX19_03850at 93.420 kb on - strand, within MPMX19_03850at 93.420 kb on - strand, within MPMX19_03850at 93.420 kb on - strand, within MPMX19_03850at 93.420 kb on - strand, within MPMX19_03850at 93.420 kb on - strand, within MPMX19_03850at 93.420 kb on - strand, within MPMX19_03850at 93.420 kb on - strand, within MPMX19_03850at 93.420 kb on - strand, within MPMX19_03850at 93.420 kb on - strand, within MPMX19_03850at 93.590 kb on + strand, within MPMX19_03850at 93.591 kb on - strand, within MPMX19_03850at 93.591 kb on - strand, within MPMX19_03850at 93.591 kb on - strand, within MPMX19_03850at 94.026 kb on + strandat 94.027 kb on - strandat 94.054 kb on + strandat 94.054 kb on + strandat 94.054 kb on + strandat 94.054 kb on + strandat 94.054 kb on + strandat 94.054 kb on + strandat 94.055 kb on - strandat 94.055 kb on - strandat 94.055 kb on - strandat 94.055 kb on - strandat 94.055 kb on - strandat 94.100 kb on + strandat 94.117 kb on - strandat 94.502 kb on + strand, within MPMX19_03851at 94.502 kb on + strand, within MPMX19_03851at 94.503 kb on - strand, within MPMX19_03851at 94.527 kb on + strand, within MPMX19_03851at 94.527 kb on + strand, within MPMX19_03851at 94.527 kb on + strand, within MPMX19_03851at 94.527 kb on + strand, within MPMX19_03851at 94.527 kb on + strand, within MPMX19_03851at 94.527 kb on + strand, within MPMX19_03851at 94.527 kb on + strand, within MPMX19_03851at 94.527 kb on + strand, within MPMX19_03851at 94.528 kb on - strand, within MPMX19_03851at 94.528 kb on - strand, within MPMX19_03851at 94.528 kb on - strand, within MPMX19_03851at 94.528 kb on - strand, within MPMX19_03851at 94.528 kb on - strand, within MPMX19_03851

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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91,288 + +0.3
91,288 + +0.4
91,288 + +0.3
91,288 + +0.2
91,288 + -1.7
91,288 + -0.1
91,364 + -1.4
91,364 + -0.7
91,364 + -1.4
91,364 + +0.4
91,364 + -0.0
91,364 + +0.3
91,364 + -1.9
91,364 + -0.2
91,364 + -0.1
91,365 - -1.4
91,365 - -1.3
91,512 + +0.9
91,512 + +0.6
91,512 + +0.4
91,513 - -0.7
91,757 + -0.9
91,757 + +0.9
91,757 + -0.7
91,757 + -1.1
91,757 + +0.2
91,758 - -0.3
91,758 - -1.4
91,758 - -1.1
91,758 - -0.7
91,758 - -0.4
91,758 - -0.9
91,758 - +0.3
91,988 + -1.1
91,988 + -1.7
91,989 - +0.9
91,989 - -1.3
91,989 - -2.7
91,989 - -1.7
91,989 - -0.4
91,989 - +0.3
92,018 + MPMX19_03850 0.11 -1.4
92,018 + MPMX19_03850 0.11 -0.4
92,018 + MPMX19_03850 0.11 -1.1
92,019 - MPMX19_03850 0.11 -0.7
92,042 + MPMX19_03850 0.12 -1.2
92,042 + MPMX19_03850 0.12 -2.3
92,043 - MPMX19_03850 0.12 -2.1
92,043 - MPMX19_03850 0.12 +1.3
92,096 + MPMX19_03850 0.14 -2.4
92,175 + MPMX19_03850 0.18 +0.9
92,175 + MPMX19_03850 0.18 -3.2
92,176 - MPMX19_03850 0.18 -1.1
92,176 - MPMX19_03850 0.18 +0.2
92,176 - MPMX19_03850 0.18 +2.2
92,176 - MPMX19_03850 0.18 -1.3
92,176 - MPMX19_03850 0.18 -1.4
92,176 - MPMX19_03850 0.18 -1.7
92,291 + MPMX19_03850 0.24 -1.7
92,291 + MPMX19_03850 0.24 -0.1
92,291 + MPMX19_03850 0.24 +0.2
92,291 + MPMX19_03850 0.24 -1.8
92,292 - MPMX19_03850 0.24 -1.7
92,292 - MPMX19_03850 0.24 -1.1
92,292 - MPMX19_03850 0.24 -2.3
92,292 - MPMX19_03850 0.24 -0.4
92,292 - MPMX19_03850 0.24 -0.1
92,390 + MPMX19_03850 0.28 -0.1
92,391 - MPMX19_03850 0.28 -0.2
92,391 - MPMX19_03850 0.28 -1.1
92,391 - MPMX19_03850 0.28 -1.1
92,391 - MPMX19_03850 0.28 -1.4
92,391 - MPMX19_03850 0.28 -1.7
92,483 + MPMX19_03850 0.33 -0.5
92,483 + MPMX19_03850 0.33 -1.4
92,483 + MPMX19_03850 0.33 -2.3
92,483 + MPMX19_03850 0.33 -0.1
92,484 - MPMX19_03850 0.33 -0.8
92,484 - MPMX19_03850 0.33 -0.6
92,484 - MPMX19_03850 0.33 -2.4
92,484 - MPMX19_03850 0.33 -1.7
92,484 - MPMX19_03850 0.33 +0.4
92,484 - MPMX19_03850 0.33 -1.7
92,484 - MPMX19_03850 0.33 -0.7
92,484 - MPMX19_03850 0.33 -1.4
92,492 + MPMX19_03850 0.33 -0.8
92,492 + MPMX19_03850 0.33 -0.3
92,492 + MPMX19_03850 0.33 -0.8
92,493 - MPMX19_03850 0.33 -0.7
92,493 - MPMX19_03850 0.33 -1.1
92,493 - MPMX19_03850 0.33 -1.6
92,528 + MPMX19_03850 0.35 +0.9
92,528 + MPMX19_03850 0.35 -1.3
92,528 + MPMX19_03850 0.35 -1.8
92,528 + MPMX19_03850 0.35 -0.7
92,528 + MPMX19_03850 0.35 -2.0
92,528 + MPMX19_03850 0.35 -4.1
92,528 + MPMX19_03850 0.35 -1.7
92,528 + MPMX19_03850 0.35 +0.7
92,528 + MPMX19_03850 0.35 -1.3
92,528 + MPMX19_03850 0.35 -1.1
92,528 + MPMX19_03850 0.35 -0.8
92,529 - MPMX19_03850 0.35 -0.7
92,529 - MPMX19_03850 0.35 +0.9
92,529 - MPMX19_03850 0.35 -0.4
92,529 - MPMX19_03850 0.35 -1.4
92,529 - MPMX19_03850 0.35 -1.1
92,529 - MPMX19_03850 0.35 -1.1
92,529 - MPMX19_03850 0.35 -1.1
92,529 - MPMX19_03850 0.35 -1.4
92,529 - MPMX19_03850 0.35 +0.3
92,529 - MPMX19_03850 0.35 -0.4
92,615 + MPMX19_03850 0.39 -2.4
92,616 - MPMX19_03850 0.39 -1.4
92,616 - MPMX19_03850 0.39 -0.7
92,616 - MPMX19_03850 0.39 -0.8
92,684 + MPMX19_03850 0.42 -1.7
92,684 + MPMX19_03850 0.42 -0.1
92,684 + MPMX19_03850 0.42 -2.3
92,684 + MPMX19_03850 0.42 -0.4
92,684 + MPMX19_03850 0.42 -2.6
92,684 + MPMX19_03850 0.42 -1.4
92,684 + MPMX19_03850 0.42 -1.1
92,684 + MPMX19_03850 0.42 -1.8
92,684 + MPMX19_03850 0.42 -1.2
92,684 + MPMX19_03850 0.42 -0.1
92,684 + MPMX19_03850 0.42 -2.1
92,684 + MPMX19_03850 0.42 -0.4
92,684 + MPMX19_03850 0.42 +0.9
92,684 + MPMX19_03850 0.42 -1.4
92,685 - MPMX19_03850 0.42 -1.9
92,685 - MPMX19_03850 0.42 +0.9
92,685 - MPMX19_03850 0.42 -0.6
92,685 - MPMX19_03850 0.42 +0.2
92,685 - MPMX19_03850 0.42 -1.1
92,685 - MPMX19_03850 0.42 -1.4
92,685 - MPMX19_03850 0.42 -0.9
92,685 - MPMX19_03850 0.42 -1.4
92,685 - MPMX19_03850 0.42 -0.4
92,685 - MPMX19_03850 0.42 +0.2
92,714 + MPMX19_03850 0.43 +0.1
92,715 - MPMX19_03850 0.43 -1.4
92,717 + MPMX19_03850 0.43 -0.1
92,717 + MPMX19_03850 0.43 -0.6
92,717 + MPMX19_03850 0.43 -0.7
92,717 + MPMX19_03850 0.43 -1.1
92,717 + MPMX19_03850 0.43 -1.7
92,717 + MPMX19_03850 0.43 -0.7
92,717 + MPMX19_03850 0.43 +0.3
92,717 + MPMX19_03850 0.43 -1.3
92,717 + MPMX19_03850 0.43 -0.7
92,717 + MPMX19_03850 0.43 -1.1
92,717 + MPMX19_03850 0.43 -1.1
92,717 + MPMX19_03850 0.43 -0.5
92,718 - MPMX19_03850 0.44 -0.7
92,718 - MPMX19_03850 0.44 -1.0
92,718 - MPMX19_03850 0.44 -0.4
92,718 - MPMX19_03850 0.44 -0.1
92,718 - MPMX19_03850 0.44 -1.1
92,718 - MPMX19_03850 0.44 -2.8
92,718 - MPMX19_03850 0.44 -1.9
92,718 - MPMX19_03850 0.44 -2.6
92,718 - MPMX19_03850 0.44 -1.1
92,718 - MPMX19_03850 0.44 -1.7
92,718 - MPMX19_03850 0.44 -0.5
92,718 - MPMX19_03850 0.44 -0.1
92,799 - MPMX19_03850 0.47 -1.1
92,868 - MPMX19_03850 0.51 -1.1
92,873 + MPMX19_03850 0.51 -1.1
92,972 + MPMX19_03850 0.55 -1.1
93,041 + MPMX19_03850 0.59 -1.1
93,042 - MPMX19_03850 0.59 -0.7
93,191 + MPMX19_03850 0.66 -1.9
93,191 + MPMX19_03850 0.66 +0.9
93,192 - MPMX19_03850 0.66 +0.4
93,192 - MPMX19_03850 0.66 -1.3
93,419 + MPMX19_03850 0.76 -2.0
93,419 + MPMX19_03850 0.76 -0.9
93,420 - MPMX19_03850 0.76 -0.7
93,420 - MPMX19_03850 0.76 -1.0
93,420 - MPMX19_03850 0.76 -0.4
93,420 - MPMX19_03850 0.76 +0.5
93,420 - MPMX19_03850 0.76 +1.9
93,420 - MPMX19_03850 0.76 -0.1
93,420 - MPMX19_03850 0.76 -0.9
93,420 - MPMX19_03850 0.76 -1.4
93,420 - MPMX19_03850 0.76 -0.1
93,420 - MPMX19_03850 0.76 -0.7
93,590 + MPMX19_03850 0.84 -0.9
93,591 - MPMX19_03850 0.84 -1.8
93,591 - MPMX19_03850 0.84 -0.7
93,591 - MPMX19_03850 0.84 +0.9
94,026 + +0.2
94,027 - -0.1
94,054 + -2.7
94,054 + +0.2
94,054 + -1.7
94,054 + -0.7
94,054 + -0.4
94,054 + -1.1
94,055 - -0.7
94,055 - -0.1
94,055 - +0.2
94,055 - -1.3
94,055 - +0.1
94,100 + -1.9
94,117 - -1.9
94,502 + MPMX19_03851 0.36 -1.0
94,502 + MPMX19_03851 0.36 -0.7
94,503 - MPMX19_03851 0.36 +0.9
94,527 + MPMX19_03851 0.39 +0.1
94,527 + MPMX19_03851 0.39 -0.4
94,527 + MPMX19_03851 0.39 -0.1
94,527 + MPMX19_03851 0.39 -0.9
94,527 + MPMX19_03851 0.39 -1.1
94,527 + MPMX19_03851 0.39 -0.7
94,527 + MPMX19_03851 0.39 -0.7
94,527 + MPMX19_03851 0.39 -0.9
94,528 - MPMX19_03851 0.39 -1.9
94,528 - MPMX19_03851 0.39 -0.5
94,528 - MPMX19_03851 0.39 +0.3
94,528 - MPMX19_03851 0.39 +0.1
94,528 - MPMX19_03851 0.39 +0.9

Or see this region's nucleotide sequence