Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03451

Experiment: NF_with_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03449 and MPMX19_03450 are separated by 192 nucleotidesMPMX19_03450 and MPMX19_03451 are separated by 137 nucleotidesMPMX19_03451 and MPMX19_03452 are separated by 34 nucleotidesMPMX19_03452 and MPMX19_03453 overlap by 1 nucleotides MPMX19_03449: MPMX19_03449 - hypothetical protein, at 845,635 to 846,339 _03449 MPMX19_03450: MPMX19_03450 - hypothetical protein, at 846,532 to 846,750 _03450 MPMX19_03451: MPMX19_03451 - hypothetical protein, at 846,888 to 849,251 _03451 MPMX19_03452: MPMX19_03452 - Putative aliphatic sulfonates transport permease protein SsuC, at 849,286 to 850,029 _03452 MPMX19_03453: MPMX19_03453 - Putative aliphatic sulfonates-binding protein, at 850,029 to 851,048 _03453 Position (kb) 846 847 848 849 850Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 845.908 kb on + strand, within MPMX19_03449at 845.909 kb on - strand, within MPMX19_03449at 845.909 kb on - strand, within MPMX19_03449at 846.029 kb on - strand, within MPMX19_03449at 846.034 kb on + strand, within MPMX19_03449at 846.035 kb on - strand, within MPMX19_03449at 846.067 kb on + strand, within MPMX19_03449at 846.067 kb on + strand, within MPMX19_03449at 846.145 kb on + strand, within MPMX19_03449at 846.145 kb on + strand, within MPMX19_03449at 846.145 kb on + strand, within MPMX19_03449at 846.145 kb on + strand, within MPMX19_03449at 846.145 kb on + strand, within MPMX19_03449at 846.145 kb on + strand, within MPMX19_03449at 846.146 kb on - strand, within MPMX19_03449at 846.146 kb on - strand, within MPMX19_03449at 846.146 kb on - strand, within MPMX19_03449at 846.146 kb on - strand, within MPMX19_03449at 846.146 kb on - strand, within MPMX19_03449at 846.146 kb on - strand, within MPMX19_03449at 846.154 kb on + strand, within MPMX19_03449at 846.154 kb on + strand, within MPMX19_03449at 846.154 kb on + strand, within MPMX19_03449at 846.154 kb on + strand, within MPMX19_03449at 846.154 kb on + strand, within MPMX19_03449at 846.154 kb on + strand, within MPMX19_03449at 846.154 kb on + strand, within MPMX19_03449at 846.155 kb on - strand, within MPMX19_03449at 846.155 kb on - strand, within MPMX19_03449at 846.337 kb on + strandat 846.338 kb on - strandat 846.374 kb on + strandat 846.374 kb on + strandat 846.374 kb on + strandat 846.374 kb on + strandat 846.374 kb on + strandat 846.375 kb on - strandat 846.375 kb on - strandat 846.423 kb on + strandat 846.423 kb on + strandat 846.424 kb on - strandat 846.433 kb on + strandat 846.433 kb on + strandat 846.433 kb on + strandat 846.434 kb on - strandat 846.434 kb on - strandat 846.434 kb on - strandat 846.455 kb on + strandat 846.456 kb on - strandat 846.456 kb on - strandat 846.646 kb on + strand, within MPMX19_03450at 846.647 kb on - strand, within MPMX19_03450at 846.647 kb on - strand, within MPMX19_03450at 846.647 kb on - strand, within MPMX19_03450at 846.647 kb on - strand, within MPMX19_03450at 847.143 kb on + strand, within MPMX19_03451at 847.143 kb on + strand, within MPMX19_03451at 847.144 kb on - strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.201 kb on + strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.202 kb on - strand, within MPMX19_03451at 847.525 kb on + strand, within MPMX19_03451at 847.526 kb on - strand, within MPMX19_03451at 847.526 kb on - strand, within MPMX19_03451at 847.526 kb on - strand, within MPMX19_03451at 847.526 kb on - strand, within MPMX19_03451at 847.849 kb on + strand, within MPMX19_03451at 847.849 kb on + strand, within MPMX19_03451at 847.849 kb on + strand, within MPMX19_03451at 847.849 kb on + strand, within MPMX19_03451at 847.981 kb on + strand, within MPMX19_03451at 847.990 kb on + strand, within MPMX19_03451at 847.990 kb on + strand, within MPMX19_03451at 848.171 kb on - strand, within MPMX19_03451at 848.365 kb on + strand, within MPMX19_03451at 848.365 kb on + strand, within MPMX19_03451at 848.365 kb on + strand, within MPMX19_03451at 848.365 kb on + strand, within MPMX19_03451at 848.365 kb on + strand, within MPMX19_03451at 848.365 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.368 kb on + strand, within MPMX19_03451at 848.369 kb on - strand, within MPMX19_03451at 848.369 kb on - strand, within MPMX19_03451at 848.369 kb on - strand, within MPMX19_03451at 848.369 kb on - strand, within MPMX19_03451at 848.369 kb on - strand, within MPMX19_03451at 848.494 kb on + strand, within MPMX19_03451at 848.494 kb on + strand, within MPMX19_03451at 848.495 kb on - strand, within MPMX19_03451at 848.495 kb on - strand, within MPMX19_03451at 848.495 kb on - strand, within MPMX19_03451at 848.495 kb on - strand, within MPMX19_03451at 848.861 kb on - strand, within MPMX19_03451at 848.861 kb on - strand, within MPMX19_03451at 848.896 kb on + strand, within MPMX19_03451at 848.986 kb on + strand, within MPMX19_03451at 848.986 kb on + strand, within MPMX19_03451at 848.986 kb on + strand, within MPMX19_03451at 848.986 kb on + strand, within MPMX19_03451at 848.986 kb on + strand, within MPMX19_03451at 848.987 kb on - strand, within MPMX19_03451at 848.987 kb on - strand, within MPMX19_03451at 848.987 kb on - strand, within MPMX19_03451at 848.987 kb on - strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.001 kb on + strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.002 kb on - strand, within MPMX19_03451at 849.280 kb on - strandat 849.280 kb on - strandat 849.540 kb on - strand, within MPMX19_03452at 849.540 kb on - strand, within MPMX19_03452at 849.540 kb on - strand, within MPMX19_03452at 849.540 kb on - strand, within MPMX19_03452at 849.837 kb on + strand, within MPMX19_03452at 849.837 kb on + strand, within MPMX19_03452at 849.837 kb on + strand, within MPMX19_03452at 849.838 kb on - strand, within MPMX19_03452at 849.838 kb on - strand, within MPMX19_03452at 849.948 kb on - strand, within MPMX19_03452at 849.948 kb on - strand, within MPMX19_03452at 849.948 kb on - strand, within MPMX19_03452at 850.013 kb on + strandat 850.052 kb on - strandat 850.052 kb on - strandat 850.052 kb on - strandat 850.052 kb on - strandat 850.052 kb on - strandat 850.052 kb on - strandat 850.221 kb on - strand, within MPMX19_03453

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
remove
845,908 + MPMX19_03449 0.39 -2.0
845,909 - MPMX19_03449 0.39 -2.1
845,909 - MPMX19_03449 0.39 -0.4
846,029 - MPMX19_03449 0.56 -0.4
846,034 + MPMX19_03449 0.57 -1.3
846,035 - MPMX19_03449 0.57 -0.7
846,067 + MPMX19_03449 0.61 -0.2
846,067 + MPMX19_03449 0.61 -0.2
846,145 + MPMX19_03449 0.72 +1.2
846,145 + MPMX19_03449 0.72 +1.8
846,145 + MPMX19_03449 0.72 -0.9
846,145 + MPMX19_03449 0.72 -2.4
846,145 + MPMX19_03449 0.72 -0.7
846,145 + MPMX19_03449 0.72 +0.0
846,146 - MPMX19_03449 0.72 +0.8
846,146 - MPMX19_03449 0.72 +1.8
846,146 - MPMX19_03449 0.72 +0.2
846,146 - MPMX19_03449 0.72 -0.8
846,146 - MPMX19_03449 0.72 -0.1
846,146 - MPMX19_03449 0.72 +1.2
846,154 + MPMX19_03449 0.74 +1.2
846,154 + MPMX19_03449 0.74 -0.4
846,154 + MPMX19_03449 0.74 +1.2
846,154 + MPMX19_03449 0.74 +0.1
846,154 + MPMX19_03449 0.74 -1.6
846,154 + MPMX19_03449 0.74 -0.8
846,154 + MPMX19_03449 0.74 -1.4
846,155 - MPMX19_03449 0.74 +0.4
846,155 - MPMX19_03449 0.74 +0.9
846,337 + +2.2
846,338 - +0.9
846,374 + +0.9
846,374 + +0.2
846,374 + -0.8
846,374 + -1.3
846,374 + -0.2
846,375 - -0.4
846,375 - -0.6
846,423 + +0.9
846,423 + -1.5
846,424 - -1.6
846,433 + -0.3
846,433 + -0.6
846,433 + +1.2
846,434 - +0.4
846,434 - +0.2
846,434 - +0.0
846,455 + -1.8
846,456 - -1.7
846,456 - -0.8
846,646 + MPMX19_03450 0.52 -1.3
846,647 - MPMX19_03450 0.53 -2.4
846,647 - MPMX19_03450 0.53 +0.2
846,647 - MPMX19_03450 0.53 -1.8
846,647 - MPMX19_03450 0.53 -1.1
847,143 + MPMX19_03451 0.11 +0.2
847,143 + MPMX19_03451 0.11 +1.2
847,144 - MPMX19_03451 0.11 +0.5
847,201 + MPMX19_03451 0.13 -0.1
847,201 + MPMX19_03451 0.13 -1.8
847,201 + MPMX19_03451 0.13 +0.2
847,201 + MPMX19_03451 0.13 +1.6
847,201 + MPMX19_03451 0.13 +0.4
847,201 + MPMX19_03451 0.13 -3.3
847,201 + MPMX19_03451 0.13 -0.7
847,201 + MPMX19_03451 0.13 +0.2
847,201 + MPMX19_03451 0.13 -1.1
847,201 + MPMX19_03451 0.13 -0.4
847,201 + MPMX19_03451 0.13 +0.2
847,201 + MPMX19_03451 0.13 -0.8
847,202 - MPMX19_03451 0.13 -1.1
847,202 - MPMX19_03451 0.13 -0.4
847,202 - MPMX19_03451 0.13 +1.2
847,202 - MPMX19_03451 0.13 -0.4
847,202 - MPMX19_03451 0.13 -1.5
847,202 - MPMX19_03451 0.13 -0.7
847,202 - MPMX19_03451 0.13 -0.3
847,202 - MPMX19_03451 0.13 +0.4
847,202 - MPMX19_03451 0.13 -0.4
847,202 - MPMX19_03451 0.13 +0.1
847,202 - MPMX19_03451 0.13 -0.6
847,202 - MPMX19_03451 0.13 -1.1
847,202 - MPMX19_03451 0.13 -0.6
847,202 - MPMX19_03451 0.13 -1.4
847,202 - MPMX19_03451 0.13 +1.2
847,525 + MPMX19_03451 0.27 -2.5
847,526 - MPMX19_03451 0.27 -0.8
847,526 - MPMX19_03451 0.27 +0.8
847,526 - MPMX19_03451 0.27 +0.2
847,526 - MPMX19_03451 0.27 -0.8
847,849 + MPMX19_03451 0.41 -0.9
847,849 + MPMX19_03451 0.41 -2.0
847,849 + MPMX19_03451 0.41 -0.4
847,849 + MPMX19_03451 0.41 -0.6
847,981 + MPMX19_03451 0.46 -1.6
847,990 + MPMX19_03451 0.47 +1.2
847,990 + MPMX19_03451 0.47 -1.4
848,171 - MPMX19_03451 0.54 -2.0
848,365 + MPMX19_03451 0.62 -1.3
848,365 + MPMX19_03451 0.62 -0.6
848,365 + MPMX19_03451 0.62 +1.8
848,365 + MPMX19_03451 0.62 -0.7
848,365 + MPMX19_03451 0.62 +0.2
848,365 + MPMX19_03451 0.62 -1.4
848,368 + MPMX19_03451 0.63 -0.1
848,368 + MPMX19_03451 0.63 +0.7
848,368 + MPMX19_03451 0.63 +0.8
848,368 + MPMX19_03451 0.63 -1.4
848,368 + MPMX19_03451 0.63 -0.7
848,368 + MPMX19_03451 0.63 +0.8
848,368 + MPMX19_03451 0.63 -0.8
848,368 + MPMX19_03451 0.63 -1.1
848,368 + MPMX19_03451 0.63 -1.4
848,368 + MPMX19_03451 0.63 +0.3
848,368 + MPMX19_03451 0.63 +1.2
848,368 + MPMX19_03451 0.63 -0.1
848,369 - MPMX19_03451 0.63 +1.2
848,369 - MPMX19_03451 0.63 +0.1
848,369 - MPMX19_03451 0.63 +2.2
848,369 - MPMX19_03451 0.63 -1.4
848,369 - MPMX19_03451 0.63 +1.2
848,494 + MPMX19_03451 0.68 +0.0
848,494 + MPMX19_03451 0.68 -0.1
848,495 - MPMX19_03451 0.68 -2.0
848,495 - MPMX19_03451 0.68 +0.8
848,495 - MPMX19_03451 0.68 +0.6
848,495 - MPMX19_03451 0.68 -1.1
848,861 - MPMX19_03451 0.83 -1.1
848,861 - MPMX19_03451 0.83 -0.8
848,896 + MPMX19_03451 0.85 -1.7
848,986 + MPMX19_03451 0.89 -1.1
848,986 + MPMX19_03451 0.89 -0.4
848,986 + MPMX19_03451 0.89 -0.3
848,986 + MPMX19_03451 0.89 -1.1
848,986 + MPMX19_03451 0.89 +0.9
848,987 - MPMX19_03451 0.89 -0.6
848,987 - MPMX19_03451 0.89 +0.3
848,987 - MPMX19_03451 0.89 -0.4
848,987 - MPMX19_03451 0.89 -0.8
849,001 + MPMX19_03451 0.89 -1.1
849,001 + MPMX19_03451 0.89 -1.1
849,001 + MPMX19_03451 0.89 -1.6
849,001 + MPMX19_03451 0.89 -2.0
849,001 + MPMX19_03451 0.89 +0.7
849,001 + MPMX19_03451 0.89 -0.4
849,001 + MPMX19_03451 0.89 -0.1
849,001 + MPMX19_03451 0.89 -0.2
849,001 + MPMX19_03451 0.89 -2.0
849,001 + MPMX19_03451 0.89 -1.6
849,001 + MPMX19_03451 0.89 +1.2
849,001 + MPMX19_03451 0.89 -0.5
849,001 + MPMX19_03451 0.89 -0.2
849,001 + MPMX19_03451 0.89 +0.0
849,001 + MPMX19_03451 0.89 -0.6
849,001 + MPMX19_03451 0.89 +0.7
849,001 + MPMX19_03451 0.89 -1.8
849,002 - MPMX19_03451 0.89 -0.7
849,002 - MPMX19_03451 0.89 +1.2
849,002 - MPMX19_03451 0.89 -0.5
849,002 - MPMX19_03451 0.89 +0.6
849,002 - MPMX19_03451 0.89 +1.2
849,002 - MPMX19_03451 0.89 -1.1
849,002 - MPMX19_03451 0.89 +1.6
849,002 - MPMX19_03451 0.89 -1.6
849,002 - MPMX19_03451 0.89 +0.8
849,002 - MPMX19_03451 0.89 +0.2
849,002 - MPMX19_03451 0.89 -1.6
849,002 - MPMX19_03451 0.89 -1.6
849,002 - MPMX19_03451 0.89 +0.2
849,002 - MPMX19_03451 0.89 -0.3
849,002 - MPMX19_03451 0.89 +0.4
849,002 - MPMX19_03451 0.89 +0.2
849,002 - MPMX19_03451 0.89 -0.3
849,002 - MPMX19_03451 0.89 +0.3
849,002 - MPMX19_03451 0.89 -0.8
849,280 - -1.3
849,280 - -1.1
849,540 - MPMX19_03452 0.34 -1.0
849,540 - MPMX19_03452 0.34 -0.6
849,540 - MPMX19_03452 0.34 +0.4
849,540 - MPMX19_03452 0.34 -0.4
849,837 + MPMX19_03452 0.74 -0.6
849,837 + MPMX19_03452 0.74 +0.9
849,837 + MPMX19_03452 0.74 -0.9
849,838 - MPMX19_03452 0.74 -0.4
849,838 - MPMX19_03452 0.74 +2.2
849,948 - MPMX19_03452 0.89 -1.0
849,948 - MPMX19_03452 0.89 +0.6
849,948 - MPMX19_03452 0.89 +1.6
850,013 + +0.8
850,052 - +0.3
850,052 - -0.5
850,052 - +0.4
850,052 - -0.7
850,052 - -0.4
850,052 - -1.8
850,221 - MPMX19_03453 0.19 -0.4

Or see this region's nucleotide sequence