Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03297

Experiment: NF_with_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03296 and MPMX19_03297 overlap by 4 nucleotidesMPMX19_03297 and MPMX19_03298 are separated by 11 nucleotidesMPMX19_03298 and MPMX19_03299 are separated by 29 nucleotides MPMX19_03296: MPMX19_03296 - L-carnitine dehydrogenase, at 643,149 to 644,093 _03296 MPMX19_03297: MPMX19_03297 - hypothetical protein, at 644,090 to 644,803 _03297 MPMX19_03298: MPMX19_03298 - hypothetical protein, at 644,815 to 645,546 _03298 MPMX19_03299: MPMX19_03299 - 4-hydroxy-tetrahydrodipicolinate synthase, at 645,576 to 646,475 _03299 Position (kb) 644 645Strain fitness (log2 ratio) -2 -1 0 1 2at 643.452 kb on + strand, within MPMX19_03296at 643.452 kb on + strand, within MPMX19_03296at 643.452 kb on + strand, within MPMX19_03296at 643.452 kb on + strand, within MPMX19_03296at 643.452 kb on - strand, within MPMX19_03296at 643.453 kb on - strand, within MPMX19_03296at 643.453 kb on - strand, within MPMX19_03296at 643.611 kb on + strand, within MPMX19_03296at 643.612 kb on - strand, within MPMX19_03296at 643.612 kb on - strand, within MPMX19_03296at 643.612 kb on - strand, within MPMX19_03296at 643.653 kb on + strand, within MPMX19_03296at 643.653 kb on + strand, within MPMX19_03296at 643.653 kb on + strand, within MPMX19_03296at 643.654 kb on - strand, within MPMX19_03296at 643.654 kb on - strand, within MPMX19_03296at 643.654 kb on - strand, within MPMX19_03296at 643.848 kb on + strand, within MPMX19_03296at 643.848 kb on + strand, within MPMX19_03296at 643.848 kb on + strand, within MPMX19_03296at 643.849 kb on - strand, within MPMX19_03296at 643.849 kb on - strand, within MPMX19_03296at 643.849 kb on - strand, within MPMX19_03296at 643.849 kb on - strand, within MPMX19_03296at 643.849 kb on - strand, within MPMX19_03296at 643.884 kb on + strand, within MPMX19_03296at 643.884 kb on + strand, within MPMX19_03296at 643.884 kb on + strand, within MPMX19_03296at 643.884 kb on + strand, within MPMX19_03296at 643.885 kb on - strand, within MPMX19_03296at 644.224 kb on + strand, within MPMX19_03297at 644.225 kb on - strand, within MPMX19_03297at 644.225 kb on - strand, within MPMX19_03297at 644.225 kb on - strand, within MPMX19_03297at 644.304 kb on - strand, within MPMX19_03297at 644.808 kb on + strandat 645.008 kb on + strand, within MPMX19_03298at 645.008 kb on + strand, within MPMX19_03298at 645.461 kb on + strand, within MPMX19_03298at 645.461 kb on + strand, within MPMX19_03298at 645.462 kb on - strand, within MPMX19_03298at 645.644 kb on + strandat 645.644 kb on + strandat 645.645 kb on - strandat 645.645 kb on - strandat 645.645 kb on - strandat 645.645 kb on - strandat 645.645 kb on - strandat 645.645 kb on - strandat 645.645 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with_fullN
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643,452 + MPMX19_03296 0.32 +0.6
643,452 + MPMX19_03296 0.32 -0.4
643,452 + MPMX19_03296 0.32 -0.4
643,452 + MPMX19_03296 0.32 +0.5
643,452 - MPMX19_03296 0.32 +0.9
643,453 - MPMX19_03296 0.32 -1.1
643,453 - MPMX19_03296 0.32 -0.6
643,611 + MPMX19_03296 0.49 -1.4
643,612 - MPMX19_03296 0.49 +0.2
643,612 - MPMX19_03296 0.49 -0.0
643,612 - MPMX19_03296 0.49 -1.4
643,653 + MPMX19_03296 0.53 -0.4
643,653 + MPMX19_03296 0.53 +1.2
643,653 + MPMX19_03296 0.53 -0.1
643,654 - MPMX19_03296 0.53 -0.6
643,654 - MPMX19_03296 0.53 -1.6
643,654 - MPMX19_03296 0.53 +0.8
643,848 + MPMX19_03296 0.74 +1.9
643,848 + MPMX19_03296 0.74 -0.6
643,848 + MPMX19_03296 0.74 -1.5
643,849 - MPMX19_03296 0.74 -0.2
643,849 - MPMX19_03296 0.74 +0.6
643,849 - MPMX19_03296 0.74 +1.2
643,849 - MPMX19_03296 0.74 -1.1
643,849 - MPMX19_03296 0.74 -0.4
643,884 + MPMX19_03296 0.78 +0.6
643,884 + MPMX19_03296 0.78 -0.1
643,884 + MPMX19_03296 0.78 -0.9
643,884 + MPMX19_03296 0.78 +1.8
643,885 - MPMX19_03296 0.78 -0.2
644,224 + MPMX19_03297 0.19 -1.8
644,225 - MPMX19_03297 0.19 +0.3
644,225 - MPMX19_03297 0.19 -2.3
644,225 - MPMX19_03297 0.19 -1.6
644,304 - MPMX19_03297 0.30 +0.2
644,808 + -0.9
645,008 + MPMX19_03298 0.26 +0.2
645,008 + MPMX19_03298 0.26 -1.4
645,461 + MPMX19_03298 0.88 +0.3
645,461 + MPMX19_03298 0.88 +1.2
645,462 - MPMX19_03298 0.88 -1.6
645,644 + -1.4
645,644 + +0.5
645,645 - +0.0
645,645 - +1.4
645,645 - -1.2
645,645 - -2.1
645,645 - +0.4
645,645 - -0.1
645,645 - -0.8

Or see this region's nucleotide sequence