Experiment: NF_with_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03260 and MPMX19_03261 are separated by 73 nucleotides MPMX19_03261 and MPMX19_03262 are separated by 185 nucleotides
MPMX19_03260: MPMX19_03260 - HTH-type transcriptional regulator CdhR, at 601,228 to 602,280
_03260
MPMX19_03261: MPMX19_03261 - 4-hydroxyproline 2-epimerase 2, at 602,354 to 603,352
_03261
MPMX19_03262: MPMX19_03262 - putative HTH-type transcriptional repressor ExuR, at 603,538 to 604,521
_03262
Position (kb)
602
603
604 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 601.535 kb on - strand, within MPMX19_03260 at 601.535 kb on - strand, within MPMX19_03260 at 601.597 kb on + strand, within MPMX19_03260 at 601.597 kb on + strand, within MPMX19_03260 at 601.597 kb on + strand, within MPMX19_03260 at 601.598 kb on - strand, within MPMX19_03260 at 601.598 kb on - strand, within MPMX19_03260 at 601.598 kb on - strand, within MPMX19_03260 at 601.598 kb on - strand, within MPMX19_03260 at 601.708 kb on + strand, within MPMX19_03260 at 601.708 kb on + strand, within MPMX19_03260 at 601.708 kb on + strand, within MPMX19_03260 at 601.709 kb on - strand, within MPMX19_03260 at 601.709 kb on - strand, within MPMX19_03260 at 601.881 kb on + strand, within MPMX19_03260 at 601.881 kb on + strand, within MPMX19_03260 at 601.881 kb on + strand, within MPMX19_03260 at 601.882 kb on - strand, within MPMX19_03260 at 601.882 kb on - strand, within MPMX19_03260 at 601.882 kb on - strand, within MPMX19_03260 at 601.882 kb on - strand, within MPMX19_03260 at 602.122 kb on + strand, within MPMX19_03260 at 602.122 kb on + strand, within MPMX19_03260 at 602.122 kb on + strand, within MPMX19_03260 at 602.123 kb on - strand, within MPMX19_03260 at 602.123 kb on - strand, within MPMX19_03260 at 602.123 kb on - strand, within MPMX19_03260 at 602.123 kb on - strand, within MPMX19_03260 at 602.123 kb on - strand, within MPMX19_03260 at 602.125 kb on + strand, within MPMX19_03260 at 602.146 kb on + strand, within MPMX19_03260 at 602.146 kb on + strand, within MPMX19_03260 at 602.146 kb on + strand, within MPMX19_03260 at 602.146 kb on + strand, within MPMX19_03260 at 602.146 kb on + strand, within MPMX19_03260 at 602.147 kb on - strand, within MPMX19_03260 at 602.147 kb on - strand, within MPMX19_03260 at 602.147 kb on - strand, within MPMX19_03260 at 602.147 kb on - strand, within MPMX19_03260 at 602.147 kb on - strand, within MPMX19_03260 at 602.527 kb on + strand, within MPMX19_03261 at 602.527 kb on + strand, within MPMX19_03261 at 602.527 kb on + strand, within MPMX19_03261 at 602.527 kb on + strand, within MPMX19_03261 at 602.527 kb on + strand, within MPMX19_03261 at 602.528 kb on - strand, within MPMX19_03261 at 602.528 kb on - strand, within MPMX19_03261 at 602.549 kb on + strand, within MPMX19_03261 at 602.549 kb on + strand, within MPMX19_03261 at 602.549 kb on + strand, within MPMX19_03261 at 602.549 kb on + strand, within MPMX19_03261 at 602.549 kb on + strand, within MPMX19_03261 at 602.550 kb on - strand, within MPMX19_03261 at 602.550 kb on - strand, within MPMX19_03261 at 602.550 kb on - strand, within MPMX19_03261 at 602.732 kb on + strand, within MPMX19_03261 at 602.732 kb on + strand, within MPMX19_03261 at 602.732 kb on + strand, within MPMX19_03261 at 602.733 kb on - strand, within MPMX19_03261 at 602.733 kb on - strand, within MPMX19_03261 at 602.733 kb on - strand, within MPMX19_03261 at 602.786 kb on + strand, within MPMX19_03261 at 602.786 kb on + strand, within MPMX19_03261 at 602.786 kb on + strand, within MPMX19_03261 at 602.787 kb on - strand, within MPMX19_03261 at 602.787 kb on - strand, within MPMX19_03261 at 602.787 kb on - strand, within MPMX19_03261 at 602.787 kb on - strand, within MPMX19_03261 at 602.845 kb on + strand, within MPMX19_03261 at 602.846 kb on - strand, within MPMX19_03261 at 602.852 kb on + strand, within MPMX19_03261 at 602.852 kb on + strand, within MPMX19_03261 at 602.864 kb on + strand, within MPMX19_03261 at 602.864 kb on + strand, within MPMX19_03261 at 602.864 kb on + strand, within MPMX19_03261 at 602.864 kb on + strand, within MPMX19_03261 at 602.865 kb on - strand, within MPMX19_03261 at 602.865 kb on - strand, within MPMX19_03261 at 602.865 kb on - strand, within MPMX19_03261 at 602.865 kb on - strand, within MPMX19_03261 at 602.867 kb on + strand, within MPMX19_03261 at 602.867 kb on + strand, within MPMX19_03261 at 602.867 kb on + strand, within MPMX19_03261 at 602.867 kb on + strand, within MPMX19_03261 at 602.867 kb on + strand, within MPMX19_03261 at 602.868 kb on - strand, within MPMX19_03261 at 602.868 kb on - strand, within MPMX19_03261 at 602.868 kb on - strand, within MPMX19_03261 at 602.868 kb on - strand, within MPMX19_03261 at 602.938 kb on - strand, within MPMX19_03261 at 603.077 kb on + strand, within MPMX19_03261 at 603.077 kb on + strand, within MPMX19_03261 at 603.078 kb on - strand, within MPMX19_03261 at 603.078 kb on - strand, within MPMX19_03261 at 603.245 kb on + strand, within MPMX19_03261 at 603.246 kb on - strand, within MPMX19_03261 at 603.303 kb on + strand at 603.304 kb on - strand at 603.394 kb on - strand at 603.857 kb on + strand, within MPMX19_03262 at 603.858 kb on - strand, within MPMX19_03262 at 603.983 kb on + strand, within MPMX19_03262 at 603.983 kb on + strand, within MPMX19_03262 at 603.983 kb on + strand, within MPMX19_03262 at 603.983 kb on + strand, within MPMX19_03262 at 603.984 kb on - strand, within MPMX19_03262 at 603.984 kb on - strand, within MPMX19_03262
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with_fullN remove 601,535 - MPMX19_03260 0.29 -0.8 601,535 - MPMX19_03260 0.29 -0.8 601,597 + MPMX19_03260 0.35 -0.8 601,597 + MPMX19_03260 0.35 -0.7 601,597 + MPMX19_03260 0.35 +0.6 601,598 - MPMX19_03260 0.35 -0.5 601,598 - MPMX19_03260 0.35 -0.0 601,598 - MPMX19_03260 0.35 +0.0 601,598 - MPMX19_03260 0.35 -2.5 601,708 + MPMX19_03260 0.46 +0.2 601,708 + MPMX19_03260 0.46 -1.6 601,708 + MPMX19_03260 0.46 -0.8 601,709 - MPMX19_03260 0.46 -2.7 601,709 - MPMX19_03260 0.46 -0.6 601,881 + MPMX19_03260 0.62 -1.7 601,881 + MPMX19_03260 0.62 +0.4 601,881 + MPMX19_03260 0.62 +0.0 601,882 - MPMX19_03260 0.62 +0.6 601,882 - MPMX19_03260 0.62 -0.8 601,882 - MPMX19_03260 0.62 -0.1 601,882 - MPMX19_03260 0.62 -0.0 602,122 + MPMX19_03260 0.85 +0.6 602,122 + MPMX19_03260 0.85 +0.2 602,122 + MPMX19_03260 0.85 -1.2 602,123 - MPMX19_03260 0.85 +1.0 602,123 - MPMX19_03260 0.85 +0.5 602,123 - MPMX19_03260 0.85 -1.4 602,123 - MPMX19_03260 0.85 +0.8 602,123 - MPMX19_03260 0.85 +0.1 602,125 + MPMX19_03260 0.85 -0.0 602,146 + MPMX19_03260 0.87 -1.1 602,146 + MPMX19_03260 0.87 +0.6 602,146 + MPMX19_03260 0.87 -0.4 602,146 + MPMX19_03260 0.87 -0.8 602,146 + MPMX19_03260 0.87 +0.4 602,147 - MPMX19_03260 0.87 -0.8 602,147 - MPMX19_03260 0.87 -2.3 602,147 - MPMX19_03260 0.87 +0.6 602,147 - MPMX19_03260 0.87 -0.8 602,147 - MPMX19_03260 0.87 +0.3 602,527 + MPMX19_03261 0.17 -0.9 602,527 + MPMX19_03261 0.17 -1.1 602,527 + MPMX19_03261 0.17 -0.4 602,527 + MPMX19_03261 0.17 +0.0 602,527 + MPMX19_03261 0.17 -0.3 602,528 - MPMX19_03261 0.17 -0.4 602,528 - MPMX19_03261 0.17 -0.8 602,549 + MPMX19_03261 0.20 -0.1 602,549 + MPMX19_03261 0.20 -0.3 602,549 + MPMX19_03261 0.20 -1.1 602,549 + MPMX19_03261 0.20 +0.5 602,549 + MPMX19_03261 0.20 +0.2 602,550 - MPMX19_03261 0.20 -0.6 602,550 - MPMX19_03261 0.20 +0.1 602,550 - MPMX19_03261 0.20 -0.4 602,732 + MPMX19_03261 0.38 +0.6 602,732 + MPMX19_03261 0.38 -0.6 602,732 + MPMX19_03261 0.38 +1.2 602,733 - MPMX19_03261 0.38 -1.1 602,733 - MPMX19_03261 0.38 -1.0 602,733 - MPMX19_03261 0.38 -1.4 602,786 + MPMX19_03261 0.43 -1.6 602,786 + MPMX19_03261 0.43 +1.9 602,786 + MPMX19_03261 0.43 -1.4 602,787 - MPMX19_03261 0.43 -1.7 602,787 - MPMX19_03261 0.43 -0.6 602,787 - MPMX19_03261 0.43 -0.4 602,787 - MPMX19_03261 0.43 +0.8 602,845 + MPMX19_03261 0.49 -0.8 602,846 - MPMX19_03261 0.49 +0.7 602,852 + MPMX19_03261 0.50 -2.1 602,852 + MPMX19_03261 0.50 +0.4 602,864 + MPMX19_03261 0.51 +0.6 602,864 + MPMX19_03261 0.51 +0.2 602,864 + MPMX19_03261 0.51 -2.9 602,864 + MPMX19_03261 0.51 +0.9 602,865 - MPMX19_03261 0.51 -1.1 602,865 - MPMX19_03261 0.51 +0.4 602,865 - MPMX19_03261 0.51 -0.4 602,865 - MPMX19_03261 0.51 +0.3 602,867 + MPMX19_03261 0.51 -0.3 602,867 + MPMX19_03261 0.51 +0.8 602,867 + MPMX19_03261 0.51 +1.8 602,867 + MPMX19_03261 0.51 -1.4 602,867 + MPMX19_03261 0.51 +1.2 602,868 - MPMX19_03261 0.51 -0.2 602,868 - MPMX19_03261 0.51 -0.4 602,868 - MPMX19_03261 0.51 +0.1 602,868 - MPMX19_03261 0.51 +0.5 602,938 - MPMX19_03261 0.58 -1.6 603,077 + MPMX19_03261 0.72 -0.6 603,077 + MPMX19_03261 0.72 +0.9 603,078 - MPMX19_03261 0.72 +1.1 603,078 - MPMX19_03261 0.72 +0.6 603,245 + MPMX19_03261 0.89 -0.8 603,246 - MPMX19_03261 0.89 -2.0 603,303 + +1.2 603,304 - -0.3 603,394 - -1.4 603,857 + MPMX19_03262 0.32 +0.2 603,858 - MPMX19_03262 0.33 -1.1 603,983 + MPMX19_03262 0.45 -0.8 603,983 + MPMX19_03262 0.45 -0.0 603,983 + MPMX19_03262 0.45 +1.4 603,983 + MPMX19_03262 0.45 -0.8 603,984 - MPMX19_03262 0.45 -0.8 603,984 - MPMX19_03262 0.45 +0.2
Or see this region's nucleotide sequence